Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002543.1 Hibiscus syriacus cultivar Beakdansim tig00005162_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95722

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7369--7416
25
1.9
25
83
8
62
41
20
0
37
1.53
9630--9705
35
2.2
35
83
9
93
36
15
7
39
1.77
9630--9705
17
4.4
17
77
14
75
36
15
7
39
1.77
11821--11868
22
2.1
24
80
15
73
37
10
8
43
1.69
11826--11870
22
2.0
22
100
0
90
37
13
8
40
1.76
22282--22318
18
2.1
17
95
5
65
8
5
16
70
1.30
28191--28268
21
3.7
21
80
0
75
47
14
33
5
1.66
28177--28266
42
2.1
42
79
4
101
47
13
34
4
1.63
28235--28287
21
2.5
21
87
6
72
49
16
30
3
1.64
28795--29045
43
5.9
43
77
4
213
33
24
16
26
1.96
30307--30393
23
3.7
23
80
3
93
31
19
25
24
1.98
32710--32743
18
1.9
17
88
5
50
23
8
17
50
1.74
33666--33744
15
5.5
15
75
11
85
20
21
24
34
1.97
33680--33758
13
5.8
13
77
11
86
24
21
24
30
1.99
33659--33757
28
3.5
28
97
0
180
22
22
24
31
1.98
38667--38714
3
16.0
3
91
8
80
64
0
0
35
0.94
39075--39895
116
7.2
113
80
7
831
28
19
14
37
1.91
38969--39895
337
2.7
346
87
6
1272
28
19
14
38
1.90
39075--39895
224
3.6
223
81
7
831
28
19
14
37
1.91
40653--40990
114
3.0
114
94
0
577
30
20
15
33
1.94
41284--41332
16
2.8
17
81
12
64
48
6
8
36
1.58
49016--49047
15
2.1
15
94
0
55
46
3
18
31
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52309--52359
20
2.5
21
81
15
63
64
1
3
29
1.22
52331--52376
20
2.2
21
85
11
60
65
0
2
32
1.05
52327--52384
30
2.0
28
86
6
80
62
0
3
34
1.12
53158--53198
9
4.4
9
87
12
57
56
0
0
43
0.99
54049--54124
30
2.5
30
81
12
84
0
17
11
71
1.15
54510--54572
3
21.0
3
87
6
92
61
0
0
38
0.96
54514--54589
15
5.1
15
77
16
54
65
0
0
34
0.93
56990--57075
37
2.3
37
100
0
172
23
19
25
31
1.98
75375--75476
30
3.5
30
83
2
127
27
17
16
38
1.91
78075--78118
22
2.0
22
95
0
79
20
13
25
40
1.89
86649--86757
24
4.5
24
68
15
73
20
15
14
49
1.79
86649--86757
48
2.3
47
80
15
109
20
15
14
49
1.79
91277--91384
24
4.5
24
73
8
85
18
14
16
50
1.79
91314--91383
12
5.8
12
74
12
54
15
12
17
54
1.71
91277--91385
48
2.3
48
85
3
139
18
14
16
50
1.78
94049--94096
19
2.5
20
82
3
62
29
12
6
52
1.63
94955--95027
35
2.2
33
82
5
83
23
27
15
34
1.94
95372--95452
21
3.9
21
85
3
110
17
28
34
19
1.95
95372--95455
41
2.0
41
90
0
132
17
27
35
19
1.94

Tables:   1

The End!