Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002545.1 Hibiscus syriacus cultivar Beakdansim tig00005168_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59319

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2844--2879
16
2.2
17
95
5
65
13
38
5
41
1.68
9075--9318
134
1.8
135
86
2
357
36
17
10
35
1.84
15021--15473
149
3.0
149
99
0
897
35
20
16
27
1.95
16965--17009
21
2.1
21
87
0
63
15
24
28
31
1.96
20643--20676
9
3.9
9
84
7
52
61
2
0
35
1.11
20639--20677
17
2.4
17
95
4
71
61
5
0
33
1.18
23642--23786
75
1.9
75
84
2
193
40
8
12
38
1.74
25067--25111
20
2.2
21
88
4
65
44
0
0
55
0.99
28243--28290
24
2.0
24
100
0
96
25
4
29
41
1.74
28645--28727
29
2.8
29
92
1
139
43
9
14
32
1.78
32219--32254
15
2.4
15
100
0
72
19
13
38
27
1.90
33428--33503
29
2.6
29
91
0
125
44
10
13
31
1.77
39046--39184
69
2.0
69
98
0
269
21
17
10
50
1.76
40366--40528
78
2.0
80
92
3
276
55
12
12
19
1.69
44150--44219
30
2.3
30
85
5
86
24
4
11
60
1.49
44163--44219
30
1.9
30
92
0
96
21
3
14
61
1.47
44881--44957
38
2.0
38
89
0
118
42
10
19
27
1.83
51761--51816
21
2.7
19
75
24
60
44
0
10
44
1.38
51761--51819
14
4.2
14
70
21
52
45
0
10
44
1.37
56067--56245
64
2.8
61
78
16
168
25
18
25
30
1.98
56197--56229
17
1.9
17
93
0
57
15
18
39
27
1.90
56087--56245
63
2.5
64
86
7
193
24
19
25
30
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56198--56242
17
2.6
17
85
3
54
20
17
33
28
1.95
56656--56693
19
2.0
19
100
0
76
36
21
0
42
1.53
57378--57421
21
2.1
21
86
0
61
34
15
43
6
1.74

Tables:   1

The End!