Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002546.1 Hibiscus syriacus cultivar Beakdansim tig00005169_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  99178

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
275--317
21
2.0
21
81
0
50
30
25
25
18
1.98
346--390
22
2.0
22
86
4
63
28
28
26
15
1.96
1434--1489
28
2.0
28
82
6
69
37
5
17
39
1.73
1653--1877
98
2.3
99
87
5
312
26
12
22
38
1.90
1880--1947
23
3.0
23
84
0
82
22
27
23
26
1.99
7751--7893
59
2.5
57
81
3
142
34
14
6
43
1.73
12150--12176
2
13.5
2
100
0
54
48
0
0
51
1.00
13046--13086
18
2.3
18
91
4
66
29
4
2
63
1.28
15878--16467
267
2.3
259
86
8
811
27
12
19
39
1.88
21897--21940
22
2.0
23
86
4
63
77
0
6
15
0.97
22789--22848
23
2.6
23
100
0
120
20
26
25
28
1.99
23054--23130
22
3.4
22
67
13
66
33
19
6
40
1.77
23034--23138
46
2.3
46
93
1
176
33
18
5
42
1.73
25186--25259
26
2.8
26
91
6
114
72
0
2
24
0.97
25190--25259
7
10.7
7
74
18
62
71
0
2
25
1.00
25256--25364
51
2.1
50
80
12
125
33
4
2
58
1.33
25346--25411
24
2.9
22
73
10
60
19
7
1
71
1.18
25396--25462
24
2.8
24
81
2
71
28
1
1
68
1.07
25442--25497
24
2.6
21
76
17
60
25
3
1
69
1.14
25436--25503
20
3.4
19
76
13
66
27
2
1
67
1.13
40693--40739
2
23.5
2
100
0
94
51
0
0
48
1.00
50580--50618
17
2.4
16
84
12
53
23
7
2
66
1.30
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56640--56669
14
2.1
14
100
0
60
26
6
0
66
1.16
66009--66036
2
14.0
2
100
0
56
50
0
0
50
1.00
73263--73313
26
2.0
25
88
7
77
37
9
1
50
1.47
75578--75630
26
2.0
26
100
0
106
30
26
24
18
1.98
79028--79072
7
6.6
7
92
2
74
11
0
26
62
1.29
80491--80515
13
1.9
13
100
0
50
28
0
8
64
1.22
84661--84745
32
2.7
32
80
7
84
34
14
17
34
1.90
85407--85566
37
4.4
36
80
3
178
24
19
15
41
1.89
89722--89785
18
3.6
18
91
0
83
12
20
46
20
1.82
90323--90399
38
2.0
38
95
5
138
33
18
29
18
1.94
93291--93328
16
2.2
18
86
9
53
18
5
2
73
1.14
95974--96162
89
2.1
89
91
5
303
32
11
7
48
1.66
96239--96281
20
2.1
20
86
4
59
60
2
0
37
1.10
98126--98163
17
2.1
19
85
9
53
50
0
7
42
1.31

Tables:   1

The End!