Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002547.1 Hibiscus syriacus cultivar Beakdansim tig00005171_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66830

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6968--7024
30
1.9
30
85
7
80
36
22
24
15
1.94
7016--7174
30
5.4
30
86
6
218
31
21
23
23
1.98
16663--16802
64
2.3
63
77
10
146
36
7
9
46
1.65
20444--20468
6
4.2
6
100
0
50
16
0
52
32
1.44
22474--22517
15
2.6
17
79
17
56
29
36
20
13
1.91
22486--22519
15
2.3
15
100
0
68
35
32
17
14
1.91
22631--22681
23
2.1
26
89
10
81
29
23
5
41
1.78
22664--22699
12
3.0
12
83
0
54
38
22
5
33
1.77
23870--23930
29
2.1
29
100
0
122
36
21
3
39
1.70
23876--23942
29
2.3
29
92
0
107
37
22
4
35
1.75
25711--25744
2
17.0
2
100
0
68
50
0
0
50
1.00
28564--28605
19
2.3
19
84
8
52
30
21
28
19
1.97
28582--28688
46
2.3
46
84
10
132
29
17
21
30
1.96
28582--28688
45
2.4
45
84
10
130
29
17
21
30
1.96
30659--30684
13
2.0
13
100
0
52
53
0
0
46
1.00
31091--31142
20
2.6
20
96
0
95
17
23
28
30
1.97
31129--31191
23
2.8
24
73
20
64
20
23
23
31
1.98
35081--35301
117
1.9
118
79
4
250
28
13
8
48
1.72
36623--36671
19
2.6
19
87
9
66
28
18
28
24
1.98
36641--36765
47
2.7
47
82
4
157
31
16
20
32
1.94
42525--42707
2
103.5
2
70
23
99
55
0
0
43
1.08
42507--42709
59
3.5
57
78
14
184
56
0
0
42
1.07
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42516--42710
68
2.8
68
74
17
200
56
0
0
42
1.07
42597--42691
43
2.2
44
98
1
183
55
0
0
44
0.99
47850--47893
3
15.0
3
90
4
72
31
0
2
65
1.05
48826--48855
2
15.0
2
100
0
60
50
0
0
50
1.00
49236--49384
30
5.0
29
70
11
95
17
12
13
57
1.66
49236--49385
60
2.5
61
81
6
173
18
12
13
56
1.66
51535--51648
57
2.0
57
94
0
201
31
8
28
31
1.87
59040--59090
23
2.2
24
89
3
77
45
0
0
54
0.99
59047--59089
18
2.4
18
80
7
52
46
0
0
53
1.00
62431--62468
18
2.1
18
95
0
67
34
21
5
39
1.76
65374--65448
23
3.3
23
86
0
105
25
29
20
25
1.99

Tables:   1

The End!