genome.fa.s2548.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002548.1 Hibiscus syriacus cultivar Beakdansim tig00005175_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  122470

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
345--375	3	10.7	3	93	6	55	35	0	0	64	0.94
644--674	16	1.9	16	93	0	53	41	16	16	25	1.88
8049--8087	19	2.1	19	90	9	62	38	0	7	53	1.30
9374--9447	24	3.1	23	88	11	114	41	0	0	58	0.98
9382--9455	24	3.1	24	78	3	87	37	0	0	62	0.96
24222--24259	18	2.2	17	95	4	67	42	0	2	55	1.14
26473--26686	73	2.9	73	96	0	385	21	43	10	23	1.84
38949--38997	2	24.5	2	100	0	98	0	48	0	51	1.00
38997--39059	2	31.5	2	100	0	126	49	0	0	50	1.00
39883--39923	18	2.2	19	91	4	66	75	2	19	2	1.03
39897--39947	23	2.3	22	82	3	57	76	0	13	9	1.02
41241--41299	4	16.2	4	73	19	58	74	0	1	23	0.91
41241--41299	10	5.4	12	75	17	58	74	0	1	23	0.91
41239--41299	16	3.7	16	79	12	70	75	0	1	22	0.89
41246--41311	28	2.3	28	85	12	82	69	0	3	27	1.03
42116--42829	84	8.6	83	78	4	726	24	21	24	30	1.99
42086--42902	249	3.3	247	77	5	829	24	21	24	29	1.99
42048--42829	165	4.7	165	85	5	925	24	21	24	30	1.99
46228--46272	19	2.4	19	92	3	74	66	8	13	11	1.44
48031--48071	18	2.2	19	91	4	66	75	2	19	2	1.03
48045--48095	23	2.3	22	82	3	57	76	0	13	9	1.02
49389--49459	4	19.2	4	78	16	82	74	0	1	23	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49388--49471	28	3.0	28	81	14	86	71	0	2	26	0.98
49499--49540	18	2.3	19	80	8	52	59	0	2	38	1.10
52489--52539	25	2.0	26	88	3	77	49	13	11	25	1.76
53874--54552	338	2.0	338	98	0	1304	34	18	15	30	1.93
61006--61038	10	3.4	10	91	4	50	66	6	12	15	1.42
62276--62323	24	2.0	24	83	0	60	64	0	8	27	1.22
62369--62586	71	3.2	68	74	18	202	44	7	3	44	1.50
62356--62585	36	6.8	34	76	11	172	44	7	3	44	1.49
62337--62586	69	3.7	69	74	17	202	44	7	3	45	1.48
62394--62585	37	5.5	35	79	11	159	43	7	3	44	1.50
71576--71656	31	2.6	32	74	14	80	43	9	3	43	1.55
75864--75915	16	3.2	17	72	22	58	42	0	21	36	1.53
81450--81487	2	19.0	2	100	0	76	50	0	0	50	1.00
83419--83445	13	2.1	13	100	0	54	14	0	0	85	0.61
95243--95280	20	1.9	20	94	0	67	42	23	13	21	1.88
95504--95578	24	3.1	24	84	0	105	41	14	20	24	1.89
105051--105086	16	2.3	16	90	4	56	52	5	0	41	1.24
105481--105526	20	2.3	20	96	0	83	43	10	15	30	1.81
106811--106865	23	2.4	23	81	0	65	27	12	5	54	1.60
119369--119579	3	71.3	3	95	4	385	33	0	0	66	0.92

Tables:   1

The End!