Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002549.1 Hibiscus syriacus cultivar Beakdansim tig00005176_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52408

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
260--335
33
2.3
34
90
2
118
14
19
18
47
1.83
327--430
20
5.7
19
79
18
132
16
24
26
32
1.96
327--432
38
2.9
37
82
14
141
16
23
26
33
1.96
2840--2893
24
2.2
24
93
0
90
40
20
18
20
1.91
2840--2907
24
2.8
24
84
0
64
38
20
17
23
1.93
3713--3821
40
2.7
40
90
7
134
23
17
22
35
1.95
3735--3801
20
3.3
20
69
22
68
22
19
23
34
1.97
3734--3866
40
3.2
40
88
9
187
21
20
22
36
1.96
3755--3885
20
6.3
20
76
18
124
19
19
22
38
1.94
3882--3926
20
2.2
21
88
4
65
37
17
26
17
1.93
10537--10605
34
2.0
34
100
0
138
46
20
17
15
1.84
14893--14965
28
2.6
28
91
4
121
31
26
10
31
1.90
16085--16225
60
2.3
60
77
7
135
34
20
4
40
1.74
16391--16529
60
2.3
60
84
6
167
37
4
25
32
1.76
16432--16558
60
2.1
59
83
9
159
40
4
19
35
1.73
17352--17396
20
2.1
22
92
8
76
57
0
4
37
1.19
20271--20324
27
2.0
27
96
0
99
33
29
20
16
1.95
23566--23600
18
1.9
18
88
0
52
54
0
17
28
1.43
25873--25948
31
2.4
31
80
2
89
27
31
26
14
1.95
26830--26867
17
2.2
17
90
0
58
13
21
44
21
1.85
32479--32554
31
2.4
31
80
2
89
27
31
26
14
1.95
33425--33455
7
4.4
7
100
0
62
25
29
29
16
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33445--33516
17
4.4
17
86
10
105
15
22
43
19
1.88
33445--33516
31
2.2
31
87
7
99
15
22
43
19
1.88
33468--33514
14
3.1
14
90
9
67
12
23
44
19
1.85
33510--33561
20
2.7
19
81
3
59
26
30
25
17
1.97
40756--40832
25
3.1
24
73
12
66
54
0
3
41
1.19
40769--40820
20
2.7
19
80
11
52
55
0
3
40
1.18
42070--42100
15
2.0
16
93
6
55
51
3
0
45
1.17
45551--45598
21
2.3
21
79
13
55
52
10
12
25
1.71
46446--46470
2
12.5
2
100
0
50
52
48
0
0
1.00
49515--49551
17
2.2
17
100
0
74
16
37
5
40
1.71

Tables:   1

The End!