Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000255.1 Hibiscus syriacus cultivar Beakdansim tig00000466_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76687

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4414--4501
9
9.4
9
70
22
58
61
0
1
37
1.04
4415--4496
3
27.3
3
71
26
50
62
0
1
36
1.03
4418--4506
16
5.9
16
71
25
68
60
0
2
37
1.09
4406--4662
50
5.3
48
70
16
165
57
0
3
38
1.18
4430--4746
147
2.2
147
91
4
523
56
0
3
40
1.18
4614--4662
14
3.4
14
84
13
64
63
0
2
34
1.06
4572--4809
56
4.3
55
70
17
161
55
0
1
42
1.11
6514--6573
28
2.1
28
84
6
77
45
5
3
46
1.41
11349--11434
43
2.0
43
81
4
102
23
22
17
37
1.94
33949--34092
46
3.1
45
88
5
191
27
11
20
40
1.87
33967--34092
46
2.8
46
91
2
193
26
11
22
39
1.87
47441--47486
2
23.0
2
100
0
92
50
0
0
50
1.00
50250--50307
3
19.7
3
86
10
57
39
0
0
60
0.97
51776--51821
23
2.0
23
84
12
60
28
2
0
69
1.00
63156--63203
10
4.7
10
86
2
69
85
0
14
0
0.60
63158--63206
6
8.2
6
78
17
57
83
0
16
0
0.64
63157--63206
16
3.1
16
85
2
64
84
0
16
0
0.63
63559--63607
19
2.8
17
84
9
64
36
8
6
48
1.58
64786--65239
113
4.0
114
93
1
761
33
15
20
30
1.93
64786--65239
227
2.0
227
92
1
723
33
15
20
30
1.93
66160--66906
113
6.6
113
84
3
947
37
13
18
30
1.89
66739--66803
20
3.3
20
66
12
53
44
9
18
27
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66847--66926
38
2.1
38
97
0
151
55
11
18
15
1.69
67187--67229
3
14.7
3
86
13
63
32
0
0
67
0.91
68590--68746
22
7.6
20
67
16
54
33
1
2
62
1.20
69024--69066
19
2.3
19
84
8
52
51
6
4
37
1.50
71501--71549
13
4.0
13
76
15
59
16
48
18
16
1.81
71550--71625
29
2.6
29
85
4
91
22
9
26
42
1.83

Tables:   1

The End!