Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01002550.1 Hibiscus syriacus cultivar Beakdansim tig00005177_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 183756
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Found at i:18721 original size:18 final size:17
Alignment explanation
Indices: 18700--18824 Score: 73
Period size: 16 Copynumber: 7.2 Consensus size: 17
18690 AATAAAAATC
18700 AAAAAATGAGAAAAAAGA
1 AAAAAATG-GAAAAAAGA
*
18718 AAAATGATGGAAAAAACGA
1 AAAA-AATGGAAAAAA-GA
*
18737 AAAGGAA---AAAAAAGAA
1 AAA-AAATGGAAAAAAG-A
18753 GAAAAAATGGAAAAGGGAAG-
1 -AAAAAATGGAAAA---AAGA
*
18773 AAAAAAT-GAAAAATGA
1 AAAAAATGGAAAAAAGA
* *
18789 AAAAAAGGGAAAAATGA
1 AAAAAATGGAAAAAAGA
*
18806 AAAAAAT-GAAAAATGA
1 AAAAAATGGAAAAAAGA
18822 AAA
1 AAA
18825 TGAAAAAAAA
Statistics
Matches: 87, Mismatches: 7, Indels: 28
0.71 0.06 0.23
Matches are distributed among these distances:
15 3 0.03
16 27 0.31
17 18 0.21
18 16 0.18
19 20 0.23
22 3 0.03
ACGTcount: A:0.72, C:0.01, G:0.20, T:0.07
Consensus pattern (17 bp):
AAAAAATGGAAAAAAGA
Found at i:18783 original size:27 final size:27
Alignment explanation
Indices: 18700--18785 Score: 81
Period size: 28 Copynumber: 3.2 Consensus size: 27
18690 AATAAAAATC
18700 AAAAAATGAGAAAA--AAGAAAAATGATGG
1 AAAAAATG-GAAAAGGAAGAAAAA-GAT-G
* * *
18728 AAAAAA-CGAAAAGGAAAAAAAAGAAG
1 AAAAAATGGAAAAGGAAGAAAAAGATG
18754 AAAAAATGGAAAAGGGAAGAAAAA-ATG
1 AAAAAATGGAAAA-GGAAGAAAAAGATG
18781 AAAAA
1 AAAAA
18786 TGAAAAAAAG
Statistics
Matches: 48, Mismatches: 6, Indels: 9
0.76 0.10 0.14
Matches are distributed among these distances:
26 12 0.25
27 14 0.29
28 22 0.46
ACGTcount: A:0.72, C:0.01, G:0.21, T:0.06
Consensus pattern (27 bp):
AAAAAATGGAAAAGGAAGAAAAAGATG
Found at i:18784 original size:7 final size:7
Alignment explanation
Indices: 18774--18845 Score: 65
Period size: 7 Copynumber: 9.7 Consensus size: 7
18764 AAAGGGAAGA
18774 AAAAATG
1 AAAAATG
18781 AAAAATG
1 AAAAATG
*
18788 AAAAAAAGGG
1 --AAAAA-TG
18798 AAAAATG
1 AAAAATG
18805 AAAAAAATG
1 --AAAAATG
18814 AAAAATG
1 AAAAATG
18821 -AAAATG
1 AAAAATG
**
18827 AAAAAAA
1 AAAAATG
18834 AAAAATG
1 AAAAATG
18841 AAAAA
1 AAAAA
18846 AAAGAAATAA
Statistics
Matches: 53, Mismatches: 6, Indels: 12
0.75 0.08 0.17
Matches are distributed among these distances:
6 6 0.11
7 29 0.55
8 5 0.09
9 12 0.23
10 1 0.02
ACGTcount: A:0.76, C:0.00, G:0.14, T:0.10
Consensus pattern (7 bp):
AAAAATG
Found at i:18826 original size:13 final size:13
Alignment explanation
Indices: 18805--18857 Score: 63
Period size: 13 Copynumber: 4.0 Consensus size: 13
18795 GGGAAAAATG
18805 AAAAAAATGAAAA
1 AAAAAAATGAAAA
**
18818 ATGAAAATGAAAAA
1 AAAAAAATG-AAAA
18832 AAAAAAATGAAAA
1 AAAAAAATGAAAA
18845 AAAAGAAAT-AAAA
1 AAAA-AAATGAAAA
18858 GGAGGGTTCA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
13 19 0.56
14 15 0.44
ACGTcount: A:0.81, C:0.00, G:0.09, T:0.09
Consensus pattern (13 bp):
AAAAAAATGAAAA
Found at i:18835 original size:33 final size:32
Alignment explanation
Indices: 18773--18852 Score: 88
Period size: 36 Copynumber: 2.3 Consensus size: 32
18763 AAAAGGGAAG
*
18773 AAAAAATGAAAAATGAAAAAAAGGGAAAAATGA
1 AAAAAATGAAAAATGAAAAAAA-GAAAAAATGA
*
18806 AAAAAATGAAAAATGAAAATGAAAAAAAAAAAATGA
1 AAAAAATGAAAAATG--AA--AAAAAGAAAAAATGA
*
18842 AAAAAAAGAAA
1 AAAAAATGAAA
18853 TAAAAGGAGG
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
33 15 0.38
35 2 0.05
36 18 0.45
37 5 0.12
ACGTcount: A:0.78, C:0.00, G:0.14, T:0.09
Consensus pattern (32 bp):
AAAAAATGAAAAATGAAAAAAAGAAAAAATGA
Found at i:20327 original size:50 final size:51
Alignment explanation
Indices: 20171--20416 Score: 374
Period size: 51 Copynumber: 4.8 Consensus size: 51
20161 AAACTCGTTT
*
20171 GTTGAAGATTGAGTCCTATACTCTCTGAAGGAATAGGGAGTGGACAAGTTC
1 GTTGAAGATTGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACAAGTTC
20222 GTTGAAGATTGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACAAGTTC
1 GTTGAAGATTGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACAAGTTC
20273 GTTGAAGATTGAGTCCTATACTCTCTGAA-GAATAGGGAGCGGACAAGTTC
1 GTTGAAGATTGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACAAGTTC
*
20323 GTTGAAGATTGTTTGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACACGTT-
1 GTTGAAGA----TTGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACAAGTTC
* * *
20377 ATTGAAGATCGAGTCTTATACTC-CTGAACGG-ATAGGGAGC
1 GTTGAAGATTGAGTCCTATACTCTCTGAA-GGAATAGGGAGC
20417 AAACCCGTTC
Statistics
Matches: 184, Mismatches: 5, Indels: 14
0.91 0.02 0.07
Matches are distributed among these distances:
49 14 0.08
50 44 0.24
51 79 0.43
54 28 0.15
55 19 0.10
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.27
Consensus pattern (51 bp):
GTTGAAGATTGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACAAGTTC
Found at i:20437 original size:104 final size:103
Alignment explanation
Indices: 20172--20527 Score: 380
Period size: 104 Copynumber: 3.4 Consensus size: 103
20162 AACTCGTTTG
* * ***
20172 TTGAAGATTGAGTCCTATACTCTCTGAAGGAATAGGGAGTGGACAAGTTCGTTGAAGA----TTG
1 TTGAAGATCGAGTCTTATACTC-CTGAA-GAATAGGGAGCAAACAAGTTCGTTGAAGATTGTTTG
* *
20233 AGTCCTATACTCTCTGAAGGAATAGGGAGCGGACAAGTTCG
64 AGTCCTATACTCTCTGAAGGAATAGGGAGCGGACACGTT-A
* * **
20274 TTGAAGATTGAGTCCTATACTCTCTGAAGAATAGGGAGCGGACAAGTTCGTTGAAGATTGTTTGA
1 TTGAAGATCGAGTCTTATACTC-CTGAAGAATAGGGAGCAAACAAGTTCGTTGAAGATTGTTTGA
20339 GTCCTATACTCTCTGAAGGAATAGGGAGCGGACACGTTA
65 GTCCTATACTCTCTGAAGGAATAGGGAGCGGACACGTTA
* ** *
20378 TTGAAGATCGAGTCTTATACTCCTGAACGGATAGGGAGCAAACCCGTTC-TATGAAGATTGTTCG
1 TTGAAGATCGAGTCTTATACTCCTGAA-GAATAGGGAGCAAACAAGTTCGT-TGAAGATTGTTTG
* * * * *
20442 AGTTCTATACTCCCTGAATGAATAGGGAGCAGACCCGTTTA
64 AGTCCTATACTCTCTGAAGGAATAGGGAGCGGACACG-TTA
20483 TTGAAGATTGTTCGAGTCTTATACTCCCTGAATGAATAGGGAGCA
1 TTGAAGA----TCGAGTCTTATACT-CCTGAA-GAATAGGGAGCA
20528 GGCACGCCAT
Statistics
Matches: 224, Mismatches: 18, Indels: 16
0.87 0.07 0.06
Matches are distributed among these distances:
101 28 0.12
102 28 0.12
103 6 0.03
104 80 0.36
105 51 0.23
109 14 0.06
110 17 0.08
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.28
Consensus pattern (103 bp):
TTGAAGATCGAGTCTTATACTCCTGAAGAATAGGGAGCAAACAAGTTCGTTGAAGATTGTTTGAG
TCCTATACTCTCTGAAGGAATAGGGAGCGGACACGTTA
Found at i:20470 original size:55 final size:54
Alignment explanation
Indices: 20181--20533 Score: 279
Period size: 55 Copynumber: 6.7 Consensus size: 54
20171 GTTGAAGATT
* * * ** *
20181 GAGTCCTATACTCTCTGAAGGAATAGGGAGTGGACAAGTTCGTTGAAGA---TT-
1 GAGTTCTATACTCCCTGAATGAATAGGGAGCAGACACGTTC-TTGAAGATTGTTC
* * * * *
20232 GAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACAAGTTCGTTGAAGA---TT-
1 GAGTTCTATACTCCCTGAATGAATAGGGAGCAGACACGTTC-TTGAAGATTGTTC
* * * * *
20283 GAGTCCTATACTCTCTGAA-GAATAGGGAGCGGACAAGTTCGTTGAAGATTGTTT
1 GAGTTCTATACTCCCTGAATGAATAGGGAGCAGACACGTTC-TTGAAGATTGTTC
* * * * *
20337 GAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACACGTTATTGAAGA----TC
1 GAGTTCTATACTCCCTGAATGAATAGGGAGCAGACACGTTCTTGAAGATTGTTC
* * * *
20387 GAG-TCTTATACT-CCTGAACGGATAGGGAGCAAACCCGTTCTATGAAGATTGTTC
1 GAGTTC-TATACTCCCTGAATGAATAGGGAGCAGACACGTTCT-TGAAGATTGTTC
* *
20441 GAGTTCTATACTCCCTGAATGAATAGGGAGCAGACCCGTTTATTGAAGATTGTTC
1 GAGTTCTATACTCCCTGAATGAATAGGGAGCAGACACG-TTCTTGAAGATTGTTC
*
20496 GAG-TCTTATACTCCCTGAATGAATAGGGAGCAGGCACG
1 GAGTTC-TATACTCCCTGAATGAATAGGGAGCAGACACG
20534 CCATTTGAAG
Statistics
Matches: 269, Mismatches: 18, Indels: 26
0.86 0.06 0.08
Matches are distributed among these distances:
49 23 0.09
50 45 0.17
51 69 0.26
53 2 0.01
54 39 0.14
55 88 0.33
56 3 0.01
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (54 bp):
GAGTTCTATACTCCCTGAATGAATAGGGAGCAGACACGTTCTTGAAGATTGTTC
Found at i:25861 original size:21 final size:21
Alignment explanation
Indices: 25837--25983 Score: 102
Period size: 21 Copynumber: 6.9 Consensus size: 21
25827 TCGAGGGTTC
25837 TATGTGGTCATTCGGGACATA
1 TATGTGGTCATTCGGGACATA
** * * *
25858 TATGTAATCCTTTGGAACATA
1 TATGTGGTCATTCGGGACATA
** *
25879 TATGCAGT-ACTTCGGGACACA
1 TATGTGGTCA-TTCGGGACATA
* * *
25900 TATTTGGTCCATT-GGAATATA
1 TATGTGGT-CATTCGGGACATA
* *
25921 TATGTGGTCATTAAGGAGA-ATTC
1 TATGTGGTCATT-CGG-GACA-TA
*
25944 TATGTGGTTATTCGGGACATA
1 TATGTGGTCATTCGGGACATA
25965 TATGTGGTCATTCGGGACA
1 TATGTGGTCATTCGGGACA
25984 ATTTTATATG
Statistics
Matches: 94, Mismatches: 24, Indels: 16
0.70 0.18 0.12
Matches are distributed among these distances:
20 4 0.04
21 68 0.72
22 8 0.09
23 14 0.15
ACGTcount: A:0.27, C:0.14, G:0.24, T:0.35
Consensus pattern (21 bp):
TATGTGGTCATTCGGGACATA
Found at i:29752 original size:2 final size:2
Alignment explanation
Indices: 29683--29733 Score: 102
Period size: 2 Copynumber: 25.5 Consensus size: 2
29673 CAGTACATAA
29683 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
29725 AT AT AT AT A
1 AT AT AT AT A
29734 CTTCATACCA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:30192 original size:22 final size:22
Alignment explanation
Indices: 30167--30227 Score: 104
Period size: 22 Copynumber: 2.8 Consensus size: 22
30157 GGCATATGAA
*
30167 ATTTGTCCCGAATGACCTATGT
1 ATTTCTCCCGAATGACCTATGT
*
30189 ATTTCTCCCGAAGGACCTATGT
1 ATTTCTCCCGAATGACCTATGT
30211 ATTTCTCCCGAATGACC
1 ATTTCTCCCGAATGACC
30228 GTTTAGACCC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 36 1.00
ACGTcount: A:0.23, C:0.28, G:0.16, T:0.33
Consensus pattern (22 bp):
ATTTCTCCCGAATGACCTATGT
Found at i:31491 original size:20 final size:20
Alignment explanation
Indices: 31466--31507 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
31456 TTTCCTTCAG
*
31466 GAGGGTATCGGTACCCTAAT
1 GAGGGTATCAGTACCCTAAT
*
31486 GAGGGTATCAGTACCCTTAT
1 GAGGGTATCAGTACCCTAAT
31506 GA
1 GA
31508 CATTCTGTGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (20 bp):
GAGGGTATCAGTACCCTAAT
Found at i:37821 original size:21 final size:21
Alignment explanation
Indices: 37795--37835 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
37785 GCGGCGGTGG
37795 ACGGTGGTCGGAAGACGGCGA
1 ACGGTGGTCGGAAGACGGCGA
* *
37816 ACGGTGGTTGGAGGACGGCG
1 ACGGTGGTCGGAAGACGGCG
37836 GACGACAAGC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.17, G:0.51, T:0.12
Consensus pattern (21 bp):
ACGGTGGTCGGAAGACGGCGA
Found at i:41894 original size:31 final size:31
Alignment explanation
Indices: 41856--41918 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
41846 GGTGACTGAA
*
41856 ACTGTTAAGCTGCTGTAACATAGCATATAAC
1 ACTGTTAAGCTGCTGTAACATAGCACATAAC
41887 ACTGTTAAGCTGCTGTAACATAGCACATAAC
1 ACTGTTAAGCTGCTGTAACATAGCACATAAC
41918 A
1 A
41919 ACCATAATAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.37, C:0.21, G:0.16, T:0.27
Consensus pattern (31 bp):
ACTGTTAAGCTGCTGTAACATAGCACATAAC
Found at i:46962 original size:210 final size:209
Alignment explanation
Indices: 46607--46990 Score: 610
Period size: 210 Copynumber: 1.8 Consensus size: 209
46597 GCTCAGGAAC
* *
46607 AGTTGAGCTTGAGCTTTTCCCTGCATCTGTTAAGCTTCATTGATTACACTAGTGAAGAACATAGA
1 AGTTGAGCTTGAGCTTTTCCCTGCATCTGTTAAGCTTCACTGATTACACTAGTGAAAAACATAGA
*
46672 ACAATCGAGGAACAACTTCTAACTTCAAAGGGGCTTGAATCATATGGATGTACTAGGCAATTTCA
66 ACAATCGAGGAACAACTTCTAACTTCAAAGGGGCTTGAATCATATGGATGCACTAGGCAATTTCA
* *
46737 GGAACTTGTGAATGAGCATTGCATATCAGCTAGAGTTAAAAGTTTTATTCTAGAAAGGATTAGGA
131 GCAACCTGTGAATGAGCATTGCATATCAGCTAGAGTTAAAAGTTTTATTCTAGAAAGGATTAGGA
46802 TGCTAATGTCATCT
196 TGCTAATGTCATCT
* *
46816 AGTTGAGCTTGAGC-TTTCCCTGCATCTGTTAAGCTTCACTGATTACACTATTTAAAAACATAGA
1 AGTTGAGCTTGAGCTTTTCCCTGCATCTGTTAAGCTTCACTGATTACACTAGTGAAAAACATAGA
* * * * *
46880 AC-ATTGAGTACCAACTTCTTCTAACTTCAAAGGGGCTTGAATCATGTGGATGCACTAGGTAATT
66 ACAATCGAGGAACAA---CTTCTAACTTCAAAGGGGCTTGAATCATATGGATGCACTAGGCAATT
*
46944 TCAGCAACCTGTGAATGAGCATTGCATATCAGCTGGAGTTAAAAGTT
128 TCAGCAACCTGTGAATGAGCATTGCATATCAGCTAGAGTTAAAAGTT
46991 GGACCTAAAG
Statistics
Matches: 159, Mismatches: 13, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
207 9 0.06
208 48 0.30
209 14 0.09
210 88 0.55
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.31
Consensus pattern (209 bp):
AGTTGAGCTTGAGCTTTTCCCTGCATCTGTTAAGCTTCACTGATTACACTAGTGAAAAACATAGA
ACAATCGAGGAACAACTTCTAACTTCAAAGGGGCTTGAATCATATGGATGCACTAGGCAATTTCA
GCAACCTGTGAATGAGCATTGCATATCAGCTAGAGTTAAAAGTTTTATTCTAGAAAGGATTAGGA
TGCTAATGTCATCT
Found at i:57626 original size:21 final size:21
Alignment explanation
Indices: 57602--57643 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
57592 AGTTTATTTT
57602 TAAACTTTATTTCAATTATCG
1 TAAACTTTATTTCAATTATCG
*
57623 TAAACTTTGTTTCAATTATCG
1 TAAACTTTATTTCAATTATCG
57644 AACTTGAAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.31, C:0.14, G:0.07, T:0.48
Consensus pattern (21 bp):
TAAACTTTATTTCAATTATCG
Found at i:57691 original size:33 final size:33
Alignment explanation
Indices: 57638--57740 Score: 165
Period size: 33 Copynumber: 3.2 Consensus size: 33
57628 TTTGTTTCAA
57638 TTATCGAACTT-GAAGTTTTTAAGTATTTGAAT
1 TTATCGAACTTGGAAGTTTTTAAGTATTTGAAT
57670 TTATCGAACTTGGAAGTTTTTAAGTATTTGAAT
1 TTATCGAACTTGGAAGTTTTTAAGTATTTGAAT
* * *
57703 TTATCAAACTTGGAAGTATTTAAGTATTTCAA-
1 TTATCGAACTTGGAAGTTTTTAAGTATTTGAAT
57735 TTATCG
1 TTATCG
57741 TAAACTTTGT
Statistics
Matches: 66, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
32 16 0.24
33 50 0.76
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.45
Consensus pattern (33 bp):
TTATCGAACTTGGAAGTTTTTAAGTATTTGAAT
Found at i:57809 original size:15 final size:15
Alignment explanation
Indices: 57782--57820 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
57772 TTTAATAATA
*
57782 TTAAAATCGGTTTTT
1 TTAAAACCGGTTTTT
*
57797 TTATAACCGGTTTTT
1 TTAAAACCGGTTTTT
57812 TTAAAACCG
1 TTAAAACCG
57821 AAACCGGTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.28, C:0.13, G:0.13, T:0.46
Consensus pattern (15 bp):
TTAAAACCGGTTTTT
Found at i:58355 original size:23 final size:23
Alignment explanation
Indices: 58329--58389 Score: 95
Period size: 23 Copynumber: 2.7 Consensus size: 23
58319 CTGAATGATT
* *
58329 CAGTGTTGACTGATTCAGCAAAA
1 CAGTGCTGAATGATTCAGCAAAA
58352 CAGTGCTGAATGATTCAGCAAAA
1 CAGTGCTGAATGATTCAGCAAAA
*
58375 CAGTGCTAAATGATT
1 CAGTGCTGAATGATT
58390 TAACACAGAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.26
Consensus pattern (23 bp):
CAGTGCTGAATGATTCAGCAAAA
Found at i:58505 original size:15 final size:15
Alignment explanation
Indices: 58469--58540 Score: 90
Period size: 15 Copynumber: 4.7 Consensus size: 15
58459 TTCAAAGCCT
**
58469 TTGAATCATTCAGTAT
1 TTGAATCATTCAG-CG
*
58485 TTGAATCATTCAACG
1 TTGAATCATTCAGCG
58500 TTGAATCATTCAGCG
1 TTGAATCATTCAGCG
*
58515 TTTAATCATTCAGCG
1 TTGAATCATTCAGCG
*
58530 TTTAATCATTC
1 TTGAATCATTC
58541 TGAAATAAAC
Statistics
Matches: 51, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
15 39 0.76
16 12 0.24
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.40
Consensus pattern (15 bp):
TTGAATCATTCAGCG
Found at i:58524 original size:30 final size:31
Alignment explanation
Indices: 58469--58540 Score: 101
Period size: 30 Copynumber: 2.4 Consensus size: 31
58459 TTCAAAGCCT
*
58469 TTGAATCATTCAGTATTTGAATCATTCAACG
1 TTGAATCATTCAGCATTTGAATCATTCAACG
* *
58500 TTGAATCATTCAGCGTTT-AATCATTCAGCG
1 TTGAATCATTCAGCATTTGAATCATTCAACG
*
58530 TTTAATCATTC
1 TTGAATCATTC
58541 TGAAATAAAC
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
30 21 0.57
31 16 0.43
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.40
Consensus pattern (31 bp):
TTGAATCATTCAGCATTTGAATCATTCAACG
Found at i:60960 original size:3 final size:3
Alignment explanation
Indices: 60952--61043 Score: 94
Period size: 3 Copynumber: 30.3 Consensus size: 3
60942 ATGTTATTTA
* * *
60952 TAT TAT TAT TAT TAT TAT AAT TAT TAT TAT TAT AAT TAT AAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * *
61000 AAT AAT AAT AAT AAT TAT TAT TAT TAT TAT TAA TAT ATAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT T
61044 TAATATTACA
Statistics
Matches: 78, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
3 75 0.96
4 3 0.04
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (3 bp):
TAT
Found at i:61529 original size:5 final size:5
Alignment explanation
Indices: 61511--61552 Score: 52
Period size: 5 Copynumber: 8.4 Consensus size: 5
61501 ACAACGCAGC
61511 AAAGA AACAGA AAAGA AAA-A AAAG- AAAGA AAAGAA AAAGA AA
1 AAAGA AA-AGA AAAGA AAAGA AAAGA AAAGA AAAG-A AAAGA AA
61553 GAAGAGAAGC
Statistics
Matches: 33, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
4 8 0.24
5 15 0.45
6 10 0.30
ACGTcount: A:0.81, C:0.02, G:0.17, T:0.00
Consensus pattern (5 bp):
AAAGA
Found at i:61542 original size:18 final size:20
Alignment explanation
Indices: 61519--61560 Score: 70
Period size: 18 Copynumber: 2.2 Consensus size: 20
61509 GCAAAGAAAC
61519 AGAAAAGAAAAA-AAAGAA-
1 AGAAAAGAAAAAGAAAGAAG
61537 AGAAAAGAAAAAGAAAGAAG
1 AGAAAAGAAAAAGAAAGAAG
61557 AGAA
1 AGAA
61561 GCTTACCGAG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 12 0.55
19 6 0.27
20 4 0.18
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (20 bp):
AGAAAAGAAAAAGAAAGAAG
Found at i:61549 original size:15 final size:15
Alignment explanation
Indices: 61511--61560 Score: 59
Period size: 15 Copynumber: 3.4 Consensus size: 15
61501 ACAACGCAGC
*
61511 AAAGAAACAGAAA-A
1 AAAGAAAAAGAAAGA
61525 GAAA-AAAAAGAAAGA
1 -AAAGAAAAAGAAAGA
61540 AAAGAAAAAGAAAGA
1 AAAGAAAAAGAAAGA
*
61555 AGAGAA
1 AAAGAA
61561 GCTTACCGAG
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
14 11 0.35
15 20 0.65
ACGTcount: A:0.78, C:0.02, G:0.20, T:0.00
Consensus pattern (15 bp):
AAAGAAAAAGAAAGA
Found at i:62439 original size:19 final size:19
Alignment explanation
Indices: 62407--62446 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
62397 ATAGTCATAA
*
62407 ATATATATAATAATAATTT
1 ATATATATAATAATAAATT
**
62426 ATATATATTTTAATAAATT
1 ATATATATAATAATAAATT
62445 AT
1 AT
62447 TTTAATATTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (19 bp):
ATATATATAATAATAAATT
Found at i:62448 original size:23 final size:20
Alignment explanation
Indices: 62414--62456 Score: 50
Period size: 23 Copynumber: 2.0 Consensus size: 20
62404 TAAATATATA
62414 TAATAATAATTTATATATATTT
1 TAATAATAATTT-TA-ATATTT
*
62436 TAATAAATTATTTTAATATTT
1 TAAT-AATAATTTTAATATTT
62457 ATTTTTCAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 6 0.32
22 6 0.32
23 7 0.37
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (20 bp):
TAATAATAATTTTAATATTT
Found at i:73832 original size:8 final size:8
Alignment explanation
Indices: 73820--73871 Score: 63
Period size: 8 Copynumber: 6.6 Consensus size: 8
73810 AAAAAATAAT
73820 AAAAAAAG
1 AAAAAAAG
*
73828 -GAAAAAG
1 AAAAAAAG
73835 AAAAAAAG
1 AAAAAAAG
73843 AAAAAAAAG
1 -AAAAAAAG
73852 AAAAAAA-
1 AAAAAAAG
*
73859 AAGAAAAG
1 AAAAAAAG
73867 AAAAA
1 AAAAA
73872 GAGGGGTCAA
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
7 12 0.32
8 17 0.46
9 8 0.22
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (8 bp):
AAAAAAAG
Found at i:73833 original size:10 final size:10
Alignment explanation
Indices: 73829--73873 Score: 60
Period size: 10 Copynumber: 4.7 Consensus size: 10
73819 TAAAAAAAGG
73829 AAAAAG-AA-
1 AAAAAGAAAA
73837 AAAAAG-AAA
1 AAAAAGAAAA
73846 AAAAAGAAAA
1 AAAAAGAAAA
73856 AAAAAGAAAA
1 AAAAAGAAAA
73866 GAAAAAGA
1 -AAAAAGA
73874 GGGGTCAAGG
Statistics
Matches: 34, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
8 8 0.24
9 6 0.18
10 13 0.38
11 7 0.21
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (10 bp):
AAAAAGAAAA
Found at i:73865 original size:24 final size:23
Alignment explanation
Indices: 73809--73871 Score: 81
Period size: 23 Copynumber: 2.7 Consensus size: 23
73799 ATGCTTAATG
* * *
73809 AAAAAAATAATAAAAAAAGGAAA
1 AAAAAAAAAAGAAAAAAAAGAAA
*
73832 AAGAAAAAAAGAAAAAAAAGAAA
1 AAAAAAAAAAGAAAAAAAAGAAA
73855 AAAAAAGAAAAGAAAAA
1 AAAAAA-AAAAGAAAAA
73872 GAGGGGTCAA
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
23 24 0.71
24 10 0.29
ACGTcount: A:0.86, C:0.00, G:0.11, T:0.03
Consensus pattern (23 bp):
AAAAAAAAAAGAAAAAAAAGAAA
Found at i:73866 original size:15 final size:15
Alignment explanation
Indices: 73820--73871 Score: 59
Period size: 15 Copynumber: 3.3 Consensus size: 15
73810 AAAAAATAAT
*
73820 AAAAAAAGGAAAAAGAA
1 AAAAAAAAG-AAAAG-A
*
73837 AAAAAGAAAAAAAAGA
1 AAAAA-AAAGAAAAGA
73853 AAAAAAAAGAAAAGA
1 AAAAAAAAGAAAAGA
73868 AAAA
1 AAAA
73872 GAGGGGTCAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
15 13 0.42
16 6 0.19
17 10 0.32
18 2 0.06
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (15 bp):
AAAAAAAAGAAAAGA
Found at i:75148 original size:84 final size:84
Alignment explanation
Indices: 75007--75317 Score: 493
Period size: 84 Copynumber: 3.7 Consensus size: 84
74997 AAACATTAGA
75007 TGGAAAGATGAATGTGCTCATAGCATCTTCTGGAAGTGTCCTTTGAGTTATCTGATCTGGTTTGG
1 TGGAAAGATGAATGTGCTCATAGCATCTTCTGGAAGTGTCCTTTGAGTTATCTGATCTGGTTTGG
75072 TAAAACCAATCATTGAATT
66 TAAAACCAATCATTGAATT
75091 TGGAAAGATGAATGTGCTCATAGCATCTTCTGGAAGTGTCCTTTGAGTTATCTGATCTGGTTTGG
1 TGGAAAGATGAATGTGCTCATAGCATCTTCTGGAAGTGTCCTTTGAGTTATCTGATCTGGTTTGG
* *
75156 TAAAACTAGTCATTGAATT
66 TAAAACCAATCATTGAATT
* *
75175 TGG-AAGAGGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGG
1 TGGAAAGATGAATGTGCTCATAGCATCTTCTGGAAGTGTCCTTTGAGTTATCTGATCTGGTTTGG
75239 TAAAACCAATCATTGAATT
66 TAAAACCAATCATTGAATT
* * * *
75258 T-GAAAGAAAT-AAGGAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCT
1 TGGAAAG--ATGAATGTG-CTC-ATAGCATCTTCTGGAAGTGTCCTTTGAGTTATCTGATCT
75318 AATTTGGTTT
Statistics
Matches: 212, Mismatches: 10, Indels: 8
0.92 0.04 0.03
Matches are distributed among these distances:
82 1 0.00
83 80 0.38
84 89 0.42
85 3 0.01
86 39 0.18
ACGTcount: A:0.28, C:0.14, G:0.23, T:0.35
Consensus pattern (84 bp):
TGGAAAGATGAATGTGCTCATAGCATCTTCTGGAAGTGTCCTTTGAGTTATCTGATCTGGTTTGG
TAAAACCAATCATTGAATT
Found at i:76246 original size:113 final size:113
Alignment explanation
Indices: 76048--76830 Score: 1195
Period size: 113 Copynumber: 7.0 Consensus size: 113
76038 GCAAAGATTT
*
76048 AAATCCATCACTTGATGGATCAGCTTTTCCAGAGGAAGTTCATAATGAGAAGAACTCATCTGAAG
1 AAATCCATCACTTGATGGATCAGCTTTTCCAGAAGAAGTTCATAATGAGAAGAACTCATCTGAAG
*
76113 AAGGATGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTC
66 AAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTC
*
76161 AAATCTATCACTTGATGGATCAGCTTTTCCAGAAGAAGTTCATAATGAGAAGAACTCATCTGAAG
1 AAATCCATCACTTGATGGATCAGCTTTTCCAGAAGAAGTTCATAATGAGAAGAACTCATCTGAAG
* *
76226 AAGGATGAAGAAGTTCATAATGAGAAGAATTTGTTCAACTTTTTGCTC
66 AAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTC
* *
76274 AAATCTATCACTTGATGGATCAGCTTTTCCAGAGGAAGTTCATAATGAGAAGAACTCATCTGAAG
1 AAATCCATCACTTGATGGATCAGCTTTTCCAGAAGAAGTTCATAATGAGAAGAACTCATCTGAAG
* *
76339 AAGGATGAAGAAGTTCATAATGAGAAGAATTTGTTTAACCTTTTGCTC
66 AAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTC
* * * **
76387 AAATCTATCACTTGATGGATTATCTTTTCCAGTTCG-AGTTCATAATGAGAAGAACTCATCTGAA
1 AAATCCATCACTTGATGGATCAGCTTTTCCAG-AAGAAGTTCATAATGAGAAGAACTCATCTGAA
76451 GAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTC
65 GAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTC
* ** * *
76500 AAATCCATCACTTGATGGATTAGCTTTTCCAGTTCG-AGTTCATAATGAGAAGAACTCATTTAAA
1 AAATCCATCACTTGATGGATCAGCTTTTCCAG-AAGAAGTTCATAATGAGAAGAACTCATCTGAA
*
76564 GAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACTTTTTGCTC
65 GAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTC
* *
76613 AAATCCATCACTTGATGGATCAACTTTTCTAG-AGAAAGTTCATAATGAGAAGAACTCATCTGAA
1 AAATCCATCACTTGATGGATCAGCTTTTCCAGAAG-AAGTTCATAATGAGAAGAACTCATCTGAA
* * *
76677 AAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAGCTTTTTGCTC
65 GAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTC
** *
76726 AAATCCATCACTTGATGGGCCAGTTTTTCCA-AAGAAGTTCATAATGAGAAGAACTCATC---AG
1 AAATCCATCACTTGATGGATCAGCTTTTCCAGAAGAAGTTCATAATGAGAAGAACTCATCTGAAG
* ** *
76787 GA-GAAGAAGAAGTTCATAATGAGAAGAGCTTATTCAACCTTTTG
66 AAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTG
76831 AATGACTCTA
Statistics
Matches: 629, Mismatches: 37, Indels: 13
0.93 0.05 0.02
Matches are distributed among these distances:
108 37 0.06
109 2 0.00
111 1 0.00
112 25 0.04
113 563 0.90
114 1 0.00
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.30
Consensus pattern (113 bp):
AAATCCATCACTTGATGGATCAGCTTTTCCAGAAGAAGTTCATAATGAGAAGAACTCATCTGAAG
AAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTC
Found at i:76813 original size:17 final size:17
Alignment explanation
Indices: 76757--76813 Score: 55
Period size: 17 Copynumber: 3.2 Consensus size: 17
76747 AGTTTTTCCA
76757 AAGAAGTTCATAATGAG
1 AAGAAGTTCATAATGAG
*
76774 AAGAA-CTCATCAGGA-GAAG
1 AAGAAGTTCAT-A--ATG-AG
76793 AAGAAGTTCATAATGAG
1 AAGAAGTTCATAATGAG
76810 AAGA
1 AAGA
76814 GCTTATTCAA
Statistics
Matches: 32, Mismatches: 2, Indels: 12
0.70 0.04 0.26
Matches are distributed among these distances:
16 4 0.12
17 13 0.41
18 2 0.06
19 9 0.28
20 4 0.12
ACGTcount: A:0.49, C:0.09, G:0.25, T:0.18
Consensus pattern (17 bp):
AAGAAGTTCATAATGAG
Found at i:77068 original size:3 final size:3
Alignment explanation
Indices: 77060--77130 Score: 106
Period size: 3 Copynumber: 23.3 Consensus size: 3
77050 ATGTTATTTA
* * *
77060 TAT TAT TAT TAT TAT TAT TAT AAT AAT TAT TAT AAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
77108 TAT TAT TAT TAT TAT ATAT TAT T
1 TAT TAT TAT TAT TAT -TAT TAT T
77131 TAATATTACA
Statistics
Matches: 63, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
3 60 0.95
4 3 0.05
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:77136 original size:12 final size:13
Alignment explanation
Indices: 77058--77136 Score: 85
Period size: 12 Copynumber: 6.2 Consensus size: 13
77048 TAATGTTATT
*
77058 TATATTATTATTA
1 TATATTATTATAA
77071 T-TATTATTATAA
1 TATATTATTATAA
77083 TA-ATTATTATAA
1 TATATTATTATAA
*
77095 T-TATTATTATTAT
1 TATATTATTA-TAA
*
77108 TATTATTATTATTA
1 TA-TATTATTATAA
77122 TATATTATT-TAA
1 TATATTATTATAA
77134 TAT
1 TAT
77137 TACAAGCCCA
Statistics
Matches: 56, Mismatches: 5, Indels: 11
0.78 0.07 0.15
Matches are distributed among these distances:
12 34 0.61
13 11 0.20
14 3 0.05
15 8 0.14
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (13 bp):
TATATTATTATAA
Found at i:80511 original size:14 final size:14
Alignment explanation
Indices: 80492--80541 Score: 100
Period size: 14 Copynumber: 3.6 Consensus size: 14
80482 ACCATCTAAT
80492 TTTAAAATGATTTA
1 TTTAAAATGATTTA
80506 TTTAAAATGATTTA
1 TTTAAAATGATTTA
80520 TTTAAAATGATTTA
1 TTTAAAATGATTTA
80534 TTTAAAAT
1 TTTAAAAT
80542 ATAAAGTCTG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 36 1.00
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (14 bp):
TTTAAAATGATTTA
Found at i:84857 original size:64 final size:63
Alignment explanation
Indices: 84745--84865 Score: 154
Period size: 64 Copynumber: 1.9 Consensus size: 63
84735 CACATTCAAA
* * *
84745 GTGCATCGATGCACCCTTTAAAGAAGAAACATCGAATGCAATTAGTGCATCGATGCATAAGGC
1 GTGCATCGATGCACCCTTGAAACAAGAAACATCGAATGCAATTAGTGCACCGATGCATAAGGC
* * * *
84808 GTGCATCGATGCACTCCCTTGATACAA-AAACATCGAATGTATTTTGTGCACCGATGCA
1 GTGCATCGATGCA--CCCTTGAAACAAGAAACATCGAATGCAATTAGTGCACCGATGCA
84866 CAAGTAAGTG
Statistics
Matches: 49, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
63 13 0.27
64 27 0.55
65 9 0.18
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.25
Consensus pattern (63 bp):
GTGCATCGATGCACCCTTGAAACAAGAAACATCGAATGCAATTAGTGCACCGATGCATAAGGC
Found at i:86625 original size:37 final size:37
Alignment explanation
Indices: 86553--86627 Score: 89
Period size: 37 Copynumber: 2.0 Consensus size: 37
86543 AAACATAAAC
* *
86553 TATATGATATGAGATAAGTGATTATATGCACATATGA
1 TATATGATATGAGATAAGTGAGTACATGCACATATGA
* * *
86590 TATATGATATGAGTTATA-TGAGTACATGTATATATGA
1 TATATGATATGAGATA-AGTGAGTACATGCACATATGA
86627 T
1 T
86628 GAATTAGTTG
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
37 31 0.97
38 1 0.03
ACGTcount: A:0.39, C:0.04, G:0.19, T:0.39
Consensus pattern (37 bp):
TATATGATATGAGATAAGTGAGTACATGCACATATGA
Found at i:91257 original size:21 final size:21
Alignment explanation
Indices: 91231--91274 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
91221 TCTTGGGTGT
*
91231 TCTTCCTTATTGTATTCATGC
1 TCTTCCTTACTGTATTCATGC
91252 TCTTCCTTACTGTATTCATGC
1 TCTTCCTTACTGTATTCATGC
91273 TC
1 TC
91275 GATTATCGGG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.14, C:0.27, G:0.09, T:0.50
Consensus pattern (21 bp):
TCTTCCTTACTGTATTCATGC
Found at i:91655 original size:14 final size:14
Alignment explanation
Indices: 91617--91649 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
91607 TAAATGTTAT
*
91617 ACGAACACAAATGA
1 ACGAACATAAATGA
91631 ACGAACATAAATGA
1 ACGAACATAAATGA
91645 ACGAA
1 ACGAA
91650 TGTAAACGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.58, C:0.18, G:0.15, T:0.09
Consensus pattern (14 bp):
ACGAACATAAATGA
Found at i:91681 original size:24 final size:24
Alignment explanation
Indices: 91617--91693 Score: 86
Period size: 24 Copynumber: 3.2 Consensus size: 24
91607 TAAATGTTAT
91617 ACGAACACAAATGAACGAACATAA
1 ACGAACACAAATGAACGAACATAA
* *
91641 ATG-A-ACGAATGTAAACGAACATAA
1 ACGAACACAAATG--AACGAACATAA
* *
91665 ACGAACACAAACGAACGAACGTAA
1 ACGAACACAAATGAACGAACATAA
91689 ACGAA
1 ACGAA
91694 ATATAAATAA
Statistics
Matches: 43, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
22 6 0.14
23 1 0.02
24 30 0.70
25 1 0.02
26 5 0.12
ACGTcount: A:0.56, C:0.19, G:0.16, T:0.09
Consensus pattern (24 bp):
ACGAACACAAATGAACGAACATAA
Found at i:91908 original size:14 final size:14
Alignment explanation
Indices: 91891--91920 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
91881 CACATAAATC
91891 AACATAAACGAACG
1 AACATAAACGAACG
*
91905 AACATAAATGAACG
1 AACATAAACGAACG
91919 AA
1 AA
91921 TATATTACCG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.60, C:0.17, G:0.13, T:0.10
Consensus pattern (14 bp):
AACATAAACGAACG
Found at i:105280 original size:35 final size:35
Alignment explanation
Indices: 105214--105280 Score: 107
Period size: 35 Copynumber: 1.9 Consensus size: 35
105204 GAGCAATAGA
* *
105214 ATGGGTTGTTGTTTCATCTTCTTCCTCGCTTTACC
1 ATGGGTTGTTGCTTCATCTTCTTCATCGCTTTACC
*
105249 ATGGGTTGTTGCTTCATCTTCTTCATTGCTTT
1 ATGGGTTGTTGCTTCATCTTCTTCATCGCTTT
105281 TGGATTGTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 29 1.00
ACGTcount: A:0.09, C:0.22, G:0.18, T:0.51
Consensus pattern (35 bp):
ATGGGTTGTTGCTTCATCTTCTTCATCGCTTTACC
Found at i:106837 original size:20 final size:20
Alignment explanation
Indices: 106750--107001 Score: 141
Period size: 20 Copynumber: 12.5 Consensus size: 20
106740 AATGACCAAC
* *
106750 AAAATCGCAATGCGAA-ATA
1 AAAATCGCAACGCGAATATG
* *
106769 AAAATCGCAACGCG-ATCTCC
1 AAAATCGCAACGCGAATAT-G
* * *
106789 AGAATCACAACGCGATTATG
1 AAAATCGCAACGCGAATATG
106809 AAGAATCGCAACGCGAATATG
1 AA-AATCGCAACGCGAATATG
* *
106830 AAAATCGCAACGCGATTCTG
1 AAAATCGCAACGCGAATATG
** * * **
106850 ACTATCGCAACGAGTATCCG
1 AAAATCGCAACGCGAATATG
* **
106870 TAAAATCGCAACGCGTATCCG
1 -AAAATCGCAACGCGAATATG
* * *
106891 TAAATCGTAACGAC-AATACG
1 AAAATCGCAACG-CGAATATG
* **
106911 TAAAATCGCAACGCGTATCCG
1 -AAAATCGCAACGCGAATATG
* * *
106932 TAAATCGCAACGAGAATACG
1 AAAATCGCAACGCGAATATG
* * *
106952 TAAATCGCAACGCGTATCTG
1 AAAATCGCAACGCGAATATG
* *
106972 TAAATCGCAACGAGAATATG
1 AAAATCGCAACGCGAATATG
*
106992 TAAATCGCAA
1 AAAATCGCAA
107002 TGCGTATCCG
Statistics
Matches: 184, Mismatches: 41, Indels: 15
0.77 0.17 0.06
Matches are distributed among these distances:
18 1 0.01
19 14 0.08
20 117 0.64
21 52 0.28
ACGTcount: A:0.39, C:0.23, G:0.19, T:0.19
Consensus pattern (20 bp):
AAAATCGCAACGCGAATATG
Found at i:106877 original size:61 final size:60
Alignment explanation
Indices: 106812--107067 Score: 248
Period size: 61 Copynumber: 4.2 Consensus size: 60
106802 GATTATGAAG
* * * **
106812 AATCGCAACGCGAATATGAAAATCGCAACGCGATTC-TGACTATCGCAACGAGTATCCGTAA
1 AATCGCAACGCGAATACGTAAATCGCAACGCGATACGT-AAAATCGCAACGAGTATCCGT-A
* * * * *
106873 AATCGCAACGCGTATCCGTAAATCGTAACGACAATACGTAAAATCGCAACGCGTATCCGTA
1 AATCGCAACGCGAATACGTAAATCGCAACG-CGATACGTAAAATCGCAACGAGTATCCGTA
* * **
106934 AATCGCAACGAGAATACGTAAATCGCAACGCG-TATCTGT-AAATCGCAACGAGAATATGTA
1 AATCGCAACGCGAATACGTAAATCGCAACGCGATA-C-GTAAAATCGCAACGAGTATCCGTA
* * * * * * *
106994 AATCGCAATGCGTATCCGTAAATCGTAACGACAATACGTAAAATCGCAATGCGTATCCGTA
1 AATCGCAACGCGAATACGTAAATCGCAACG-CGATACGTAAAATCGCAACGAGTATCCGTA
107055 AATCGCAACGCGA
1 AATCGCAACGCGA
107068 TTTTTAAAGT
Statistics
Matches: 156, Mismatches: 32, Indels: 14
0.77 0.16 0.07
Matches are distributed among these distances:
59 2 0.01
60 46 0.29
61 83 0.53
62 24 0.15
63 1 0.01
ACGTcount: A:0.37, C:0.24, G:0.19, T:0.20
Consensus pattern (60 bp):
AATCGCAACGCGAATACGTAAATCGCAACGCGATACGTAAAATCGCAACGAGTATCCGTA
Found at i:106968 original size:40 final size:41
Alignment explanation
Indices: 106812--107064 Score: 327
Period size: 41 Copynumber: 6.2 Consensus size: 41
106802 GATTATGAAG
* * *
106812 AATCGCAACGCGAATATG-AAAATCGCAACGCG-ATTC-TGA
1 AATCGCAACGAGAATACGTAAAATCGCAACGCGTATCCGT-A
* * *
106851 CTATCGCAACGAGTATCCGTAAAATCGCAACGCGTATCCGTA
1 -AATCGCAACGAGAATACGTAAAATCGCAACGCGTATCCGTA
* *
106893 AATCGTAACGACAATACGTAAAATCGCAACGCGTATCCGTA
1 AATCGCAACGAGAATACGTAAAATCGCAACGCGTATCCGTA
*
106934 AATCGCAACGAGAATACGT-AAATCGCAACGCGTATCTGTA
1 AATCGCAACGAGAATACGTAAAATCGCAACGCGTATCCGTA
* *
106974 AATCGCAACGAGAATATGT-AAATCGCAATGCGTATCCGTA
1 AATCGCAACGAGAATACGTAAAATCGCAACGCGTATCCGTA
* * *
107014 AATCGTAACGACAATACGTAAAATCGCAATGCGTATCCGTA
1 AATCGCAACGAGAATACGTAAAATCGCAACGCGTATCCGTA
107055 AATCGCAACG
1 AATCGCAACG
107065 CGATTTTTAA
Statistics
Matches: 188, Mismatches: 21, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
40 86 0.46
41 97 0.52
42 4 0.02
43 1 0.01
ACGTcount: A:0.37, C:0.24, G:0.19, T:0.20
Consensus pattern (41 bp):
AATCGCAACGAGAATACGTAAAATCGCAACGCGTATCCGTA
Found at i:107014 original size:20 final size:20
Alignment explanation
Indices: 106853--107066 Score: 216
Period size: 20 Copynumber: 10.6 Consensus size: 20
106843 GATTCTGACT
*
106853 ATCGCAACGAGTATCCGTAAA
1 ATCGCAACGCGTATCCGT-AA
106874 ATCGCAACGCGTATCCGTAA
1 ATCGCAACGCGTATCCGTAA
* * *
106894 ATCGTAACGAC-AATACGTAAA
1 ATCGCAACG-CGTATCCGT-AA
106915 ATCGCAACGCGTATCCGTAA
1 ATCGCAACGCGTATCCGTAA
* * *
106935 ATCGCAACGAGAATACGTAA
1 ATCGCAACGCGTATCCGTAA
*
106955 ATCGCAACGCGTATCTGTAA
1 ATCGCAACGCGTATCCGTAA
* * **
106975 ATCGCAACGAGAATATGTAA
1 ATCGCAACGCGTATCCGTAA
*
106995 ATCGCAATGCGTATCCGTAA
1 ATCGCAACGCGTATCCGTAA
* * *
107015 ATCGTAACGAC-AATACGTAAA
1 ATCGCAACG-CGTATCCGT-AA
*
107036 ATCGCAATGCGTATCCGTAA
1 ATCGCAACGCGTATCCGTAA
107056 ATCGCAACGCG
1 ATCGCAACGCG
107067 ATTTTTAAAG
Statistics
Matches: 156, Mismatches: 31, Indels: 13
0.78 0.16 0.06
Matches are distributed among these distances:
20 108 0.69
21 48 0.31
ACGTcount: A:0.37, C:0.24, G:0.19, T:0.20
Consensus pattern (20 bp):
ATCGCAACGCGTATCCGTAA
Found at i:107661 original size:20 final size:20
Alignment explanation
Indices: 107615--107686 Score: 74
Period size: 20 Copynumber: 3.5 Consensus size: 20
107605 TTCTAAACTT
* *
107615 AAAATCACAACATGAAAATG
1 AAAATCGCAACAGGAAAATG
107635 AAAATCGCAACAGGAAAATG
1 AAAATCGCAACAGGAAAATG
** *
107655 ACTATCGTAAC-GAGAGAAATG
1 AAAATCGCAACAG-GA-AAATG
107676 AAAATCGCAAC
1 AAAATCGCAAC
107687 GAGAGAATCG
Statistics
Matches: 42, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
19 1 0.02
20 28 0.67
21 13 0.31
ACGTcount: A:0.53, C:0.17, G:0.17, T:0.14
Consensus pattern (20 bp):
AAAATCGCAACAGGAAAATG
Found at i:107675 original size:21 final size:21
Alignment explanation
Indices: 107630--107693 Score: 78
Period size: 21 Copynumber: 3.1 Consensus size: 21
107620 CACAACATGA
107630 AAATGAAAATCGCAAC-AG-G
1 AAATGAAAATCGCAACGAGAG
** *
107649 AAAATGACTATCGTAACGAGAG
1 -AAATGAAAATCGCAACGAGAG
107671 AAATGAAAATCGCAACGAGAG
1 AAATGAAAATCGCAACGAGAG
107692 AA
1 AA
107694 TCGCAACGCG
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
20 13 0.36
21 22 0.61
22 1 0.03
ACGTcount: A:0.52, C:0.14, G:0.22, T:0.12
Consensus pattern (21 bp):
AAATGAAAATCGCAACGAGAG
Found at i:107802 original size:20 final size:19
Alignment explanation
Indices: 107736--107805 Score: 95
Period size: 19 Copynumber: 3.6 Consensus size: 19
107726 CTCTCGTTAT
*
107736 GATTTTCATTTCGCGTTGC
1 GATTTTCATTTCTCGTTGC
*
107755 GATTTTAATTTCTCGTTGC
1 GATTTTCATTTCTCGTTGC
**
107774 GATAGTCATTCTCTCGTTGC
1 GATTTTCATT-TCTCGTTGC
107794 GATTTTCATTTC
1 GATTTTCATTTC
107806 AACCAAAAGA
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
19 26 0.60
20 17 0.40
ACGTcount: A:0.14, C:0.20, G:0.17, T:0.49
Consensus pattern (19 bp):
GATTTTCATTTCTCGTTGC
Found at i:108726 original size:23 final size:23
Alignment explanation
Indices: 108700--108744 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
108690 CACCACAGCT
*
108700 CGTATAAATGCACCGAAGTGCCC
1 CGTAGAAATGCACCGAAGTGCCC
* * *
108723 CGTAGAATTGTACCGTAGTGCC
1 CGTAGAAATGCACCGAAGTGCC
108745 ATATAATAAT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.27, C:0.27, G:0.24, T:0.22
Consensus pattern (23 bp):
CGTAGAAATGCACCGAAGTGCCC
Found at i:109115 original size:34 final size:29
Alignment explanation
Indices: 109046--109117 Score: 126
Period size: 29 Copynumber: 2.5 Consensus size: 29
109036 TTTCCTGCAT
*
109046 ATTCATGTCATGTAATACATATAATATGA
1 ATTCATGTCATGTAATACATATAATATAA
*
109075 ATTCATGTCATGTAATACATTTAATATAA
1 ATTCATGTCATGTAATACATATAATATAA
109104 ATTCATGTCATGTA
1 ATTCATGTCATGTA
109118 TCATACTATG
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.39, C:0.11, G:0.10, T:0.40
Consensus pattern (29 bp):
ATTCATGTCATGTAATACATATAATATAA
Found at i:109596 original size:67 final size:67
Alignment explanation
Indices: 109423--109574 Score: 234
Period size: 67 Copynumber: 2.3 Consensus size: 67
109413 TTTTTCTCAT
* *
109423 GGGGGAATCGGTTCCCCCCCCTGGGGGTATCGATTCCCCTCAAGCATTCTGGAATTTCATATACG
1 GGGGGTATCGGTT--CCCCCCTGGGGGTATCGATTCCCCTCAAGCATTCTGGAAATTCATATACG
109488 ATGA
64 ATGA
* * *
109492 GGGGGTATCGGTTCCCCCCTGGGGGTATCGATTCCCCTCTAGCATTCTGGAAATTCAT-TTCGTT
1 GGGGGTATCGGTTCCCCCCTGGGGGTATCGATTCCCCTCAAGCATTCTGGAAATTCATATACGAT
109556 GA
66 GA
109558 GGGGGTATCGGTTCCCC
1 GGGGGTATCGGTTCCCC
109575 TTGAATGGGT
Statistics
Matches: 78, Mismatches: 5, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
66 23 0.29
67 43 0.55
69 12 0.15
ACGTcount: A:0.16, C:0.27, G:0.28, T:0.28
Consensus pattern (67 bp):
GGGGGTATCGGTTCCCCCCTGGGGGTATCGATTCCCCTCAAGCATTCTGGAAATTCATATACGAT
GA
Found at i:115661 original size:23 final size:23
Alignment explanation
Indices: 115635--115679 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
115625 CACCACAGCT
*
115635 CGTATAAATGCACCGAAGTGCCC
1 CGTAGAAATGCACCGAAGTGCCC
* *
115658 CGTAGAATTGCACCGTAGTGCC
1 CGTAGAAATGCACCGAAGTGCC
115680 ATATAATAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.27, C:0.29, G:0.24, T:0.20
Consensus pattern (23 bp):
CGTAGAAATGCACCGAAGTGCCC
Found at i:116050 original size:34 final size:29
Alignment explanation
Indices: 115981--116052 Score: 126
Period size: 29 Copynumber: 2.5 Consensus size: 29
115971 TTTCCTGCAT
*
115981 ATTCATGTCATGTAATACATATAATATGA
1 ATTCATGTCATGTAATACATATAATATAA
*
116010 ATTCATGTCATGTAATACATTTAATATAA
1 ATTCATGTCATGTAATACATATAATATAA
116039 ATTCATGTCATGTA
1 ATTCATGTCATGTA
116053 TCATACTATG
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.39, C:0.11, G:0.10, T:0.40
Consensus pattern (29 bp):
ATTCATGTCATGTAATACATATAATATAA
Found at i:116530 original size:67 final size:67
Alignment explanation
Indices: 116358--116508 Score: 241
Period size: 67 Copynumber: 2.3 Consensus size: 67
116348 TTTTTCTCAT
* *
116358 GGGGGAATCGGTTCCCCCCCTGGGGGTATCGATTCCCCTCAAGCATTCTGGAATTTCATATACGA
1 GGGGGTATCGGTT-CCCCCCTGGGGGTATCGATTCCCCTCAAGCATTCTGGAAATTCATATACGA
116423 TGA
65 TGA
* * *
116426 GGGGGTATCGGTTCCCCCCTGGGGGTATCGATTCCCCTCTAGCATTCTGGAAATTCAT-TTCGTT
1 GGGGGTATCGGTTCCCCCCTGGGGGTATCGATTCCCCTCAAGCATTCTGGAAATTCATATACGAT
116490 GA
66 GA
116492 GGGGGTATCGGTTCCCC
1 GGGGGTATCGGTTCCCC
116509 TTGAATGGGT
Statistics
Matches: 78, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
66 23 0.29
67 43 0.55
68 12 0.15
ACGTcount: A:0.17, C:0.26, G:0.28, T:0.28
Consensus pattern (67 bp):
GGGGGTATCGGTTCCCCCCTGGGGGTATCGATTCCCCTCAAGCATTCTGGAAATTCATATACGAT
GA
Found at i:118839 original size:94 final size:95
Alignment explanation
Indices: 118624--118857 Score: 380
Period size: 94 Copynumber: 2.5 Consensus size: 95
118614 TAGATTGCTT
* * * *
118624 AGTAAATTTATTCGGTTGCTGCCAATACTGCTAAACTGTTTATTCTTTAACACTGTGAAGCTAGT
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTATGAAGCTAGT
*
118689 ATTTGTCTTTTGTTTTGTCTTTTGGTTGAA
66 ATTTGTCTTTTGTTTTGTCTTTTGATTGAA
* * * *
118719 AGTAAATTTGTTTGGTTGCTGTCAATTCTGCTAAACTGTGTATTCTTTAACATTATGAAGTTAGT
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTATGAAGCTAGT
118784 ATTTGTC-TTTGTTTTGTCTTTTGATTGAA
66 ATTTGTCTTTTGTTTTGTCTTTTGATTGAA
118813 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTC
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTC
118858 ACGTTGCGAT
Statistics
Matches: 128, Mismatches: 11, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
94 64 0.50
95 64 0.50
ACGTcount: A:0.22, C:0.13, G:0.18, T:0.47
Consensus pattern (95 bp):
AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTATGAAGCTAGT
ATTTGTCTTTTGTTTTGTCTTTTGATTGAA
Found at i:119347 original size:21 final size:21
Alignment explanation
Indices: 119323--119389 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
119313 TCATTCCTCG
119323 AGAGTCCCCTCCCACCGTTCA
1 AGAGTCCCCTCCCACCGTTCA
* * ** * *
119344 AGAGGCCACTGTCATCGTTGA
1 AGAGTCCCCTCCCACCGTTCA
*
119365 AGAGGT-CCCTCCCACCATTCA
1 AGA-GTCCCCTCCCACCGTTCA
119386 AGAG
1 AGAG
119390 CCCGATTCAC
Statistics
Matches: 32, Mismatches: 13, Indels: 3
0.67 0.27 0.06
Matches are distributed among these distances:
20 1 0.03
21 30 0.94
22 1 0.03
ACGTcount: A:0.24, C:0.36, G:0.21, T:0.19
Consensus pattern (21 bp):
AGAGTCCCCTCCCACCGTTCA
Found at i:120760 original size:14 final size:14
Alignment explanation
Indices: 120741--120776 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
120731 ATTGTTTAAT
120741 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
*
120755 TGATTTGTAAAAGT
1 TGATTTGTAAAAGA
120769 TGATTTGT
1 TGATTTGT
120777 TTAATTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:120896 original size:19 final size:19
Alignment explanation
Indices: 120874--120932 Score: 65
Period size: 19 Copynumber: 3.4 Consensus size: 19
120864 AAAAATGACT
*
120874 ATCGCAATGTGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
120893 ATCGCAA--CG--A-GAGA
1 ATCGCAATGCGAAATGAAA
120907 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
120926 ATCGCAA
1 ATCGCAA
120933 CGACTAAAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 10
0.71 0.07 0.22
Matches are distributed among these distances:
14 10 0.31
15 1 0.03
16 2 0.06
17 1 0.03
18 1 0.03
19 17 0.53
ACGTcount: A:0.46, C:0.17, G:0.22, T:0.15
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:120921 original size:33 final size:34
Alignment explanation
Indices: 120874--120954 Score: 119
Period size: 33 Copynumber: 2.4 Consensus size: 34
120864 AAAAATGACT
* *
120874 ATCGCAATGTGAAATGAAAATCGCAACGA-GAGA
1 ATCGCAATGCGAAATGAAAATCGCAACGACGAAA
*
120907 ATCGCAATGCGAAATGAAAATCGCAACGACTAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGACGAAA
*
120941 ATCGCAACGCGAAA
1 ATCGCAATGCGAAA
120955 CTAAATTCGC
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
33 28 0.65
34 15 0.35
ACGTcount: A:0.46, C:0.20, G:0.21, T:0.14
Consensus pattern (34 bp):
ATCGCAATGCGAAATGAAAATCGCAACGACGAAA
Found at i:120959 original size:19 final size:18
Alignment explanation
Indices: 120906--120964 Score: 54
Period size: 19 Copynumber: 3.3 Consensus size: 18
120896 GCAACGAGAG
120906 AATCGCAATGCGAAA-TGAA
1 AATCGCAA-GCGAAACT-AA
120925 AATCGCAA-CG--ACTAA
1 AATCGCAAGCGAAACTAA
120940 AATCGCAACGCGAAACTAA
1 AATCGCAA-GCGAAACTAA
*
120959 ATTCGC
1 AATCGC
120965 GTTGCGATTT
Statistics
Matches: 34, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
15 11 0.32
16 1 0.03
17 4 0.12
19 18 0.53
ACGTcount: A:0.44, C:0.24, G:0.17, T:0.15
Consensus pattern (18 bp):
AATCGCAAGCGAAACTAA
Found at i:121005 original size:32 final size:33
Alignment explanation
Indices: 120964--121037 Score: 132
Period size: 32 Copynumber: 2.3 Consensus size: 33
120954 ACTAAATTCG
120964 CGTTGCGATTTTCATTTCGC-TTGCGATTCCCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
*
120996 CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
121029 CGTTGCGAT
1 CGTTGCGAT
121038 AGACATTAAG
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
32 20 0.50
33 20 0.50
ACGTcount: A:0.11, C:0.26, G:0.20, T:0.43
Consensus pattern (33 bp):
CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
Found at i:123618 original size:24 final size:24
Alignment explanation
Indices: 123567--123621 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
123557 AAAATCCGAG
**
123567 TATTGACCAAGATCAAAGTCTGGG
1 TATTGACCAAGATCAAAGTCTGAA
*
123591 TATTGACCAAGATCAAA-TTTCGAA
1 TATTGACCAAGATCAAAGTCT-GAA
123615 TATTGAC
1 TATTGAC
123622 TAGTACTCAC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
23 2 0.07
24 25 0.93
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.29
Consensus pattern (24 bp):
TATTGACCAAGATCAAAGTCTGAA
Found at i:124498 original size:21 final size:21
Alignment explanation
Indices: 124474--124520 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
124464 GTATTCGCGT
124474 TGCGAATTAGGAAAATCGCAA
1 TGCGAATTAGGAAAATCGCAA
* *
124495 TGCGAATTTGGGAAATCGCAA
1 TGCGAATTAGGAAAATCGCAA
124516 TGCGA
1 TGCGA
124521 TAGTCAGAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.36, C:0.15, G:0.28, T:0.21
Consensus pattern (21 bp):
TGCGAATTAGGAAAATCGCAA
Found at i:125850 original size:60 final size:60
Alignment explanation
Indices: 125736--125859 Score: 140
Period size: 60 Copynumber: 2.1 Consensus size: 60
125726 TCGGTTGACT
* * ** * *
125736 ATTTTGTAACTTTTAATAGTCGGGGGACTCAACAAAACAACACCTTAAAATTGGGAGATC
1 ATTTTATAACTTTTAATAATCAAGAGACTCAACAAAACAACACCTTAAAATTGGGAGACC
* * ** * *
125796 ATTTTATAACTTTTAATAATCAAGAGACTCAACAAAATACCACCTTGTAGTTGGGGGACC
1 ATTTTATAACTTTTAATAATCAAGAGACTCAACAAAACAACACCTTAAAATTGGGAGACC
125856 ATTT
1 ATTT
125860 CTGTACTTTA
Statistics
Matches: 52, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
60 52 1.00
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.31
Consensus pattern (60 bp):
ATTTTATAACTTTTAATAATCAAGAGACTCAACAAAACAACACCTTAAAATTGGGAGACC
Found at i:132704 original size:11 final size:12
Alignment explanation
Indices: 132672--132704 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
132662 AGTAAAACAA
132672 CAAGAAAAGCTT
1 CAAGAAAAGCTT
132684 CAAGAAAAGCTT
1 CAAGAAAAGCTT
132696 CAA-AAAAGC
1 CAAGAAAAGC
132705 ATCCAGAACA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 6 0.29
12 15 0.71
ACGTcount: A:0.55, C:0.18, G:0.15, T:0.12
Consensus pattern (12 bp):
CAAGAAAAGCTT
Found at i:135077 original size:24 final size:23
Alignment explanation
Indices: 135043--135094 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 23
135033 TGTCTAATTA
*
135043 ATATTTATGAAT-TTATAATTAAAT
1 ATATTTATGAATATTA-AA-CAAAT
*
135067 ATATTTGTGAATATTAAACAAAT
1 ATATTTATGAATATTAAACAAAT
135090 ATATT
1 ATATT
135095 ATTGAATGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 9 0.36
24 13 0.52
25 3 0.12
ACGTcount: A:0.46, C:0.02, G:0.06, T:0.46
Consensus pattern (23 bp):
ATATTTATGAATATTAAACAAAT
Found at i:137660 original size:2 final size:2
Alignment explanation
Indices: 137653--137704 Score: 104
Period size: 2 Copynumber: 26.0 Consensus size: 2
137643 TCACATATGA
137653 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
137695 AT AT AT AT AT
1 AT AT AT AT AT
137705 TGTATGGTTA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:138384 original size:22 final size:24
Alignment explanation
Indices: 138340--138393 Score: 67
Period size: 22 Copynumber: 2.3 Consensus size: 24
138330 TTTATTGAGA
*
138340 AAAAATATGTAAATAAAATTATTAT
1 AAAAA-ATGTAAATAAAAGTATTAT
138365 AAAAAATG-AAA-AAAAGTATTAT
1 AAAAAATGTAAATAAAAGTATTAT
*
138387 AACAAAT
1 AAAAAAT
138394 TATAAACTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
22 16 0.59
23 3 0.11
24 3 0.11
25 5 0.19
ACGTcount: A:0.65, C:0.02, G:0.06, T:0.28
Consensus pattern (24 bp):
AAAAAATGTAAATAAAAGTATTAT
Found at i:139525 original size:20 final size:21
Alignment explanation
Indices: 139500--139630 Score: 92
Period size: 20 Copynumber: 6.4 Consensus size: 21
139490 TTTTCCCAAT
*
139500 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
* **
139520 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATTAAGAAAA
* *
139541 TCGCAATGTGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
* **
139561 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATTAAGAAAA
* **
139582 TCGCAATGCG-A-TACTGACTA
1 TCGCAATGCGAATTA-AGAAAA
*
139602 TCGCAATGCGATAATAA-AAAA
1 TCGCAATGCGA-ATTAAGAAAA
139623 TCGCAATG
1 TCGCAATG
139631 AGATACTTAC
Statistics
Matches: 83, Mismatches: 22, Indels: 11
0.72 0.19 0.09
Matches are distributed among these distances:
19 1 0.01
20 40 0.48
21 39 0.47
22 1 0.01
23 2 0.02
ACGTcount: A:0.40, C:0.18, G:0.22, T:0.20
Consensus pattern (21 bp):
TCGCAATGCGAATTAAGAAAA
Found at i:139543 original size:21 final size:21
Alignment explanation
Indices: 139517--139592 Score: 91
Period size: 21 Copynumber: 3.7 Consensus size: 21
139507 GCGAATAAGT
139517 AAATCGCAACGCGAATTGGGA
1 AAATCGCAACGCGAATTGGGA
* * ** *
139538 AAATCGCAATGTGAA-TAAGT
1 AAATCGCAACGCGAATTGGGA
139558 AAATCGCAACGCGAATTGGGA
1 AAATCGCAACGCGAATTGGGA
*
139579 AAATCGCAATGCGA
1 AAATCGCAACGCGA
139593 TACTGACTAT
Statistics
Matches: 43, Mismatches: 11, Indels: 2
0.77 0.20 0.04
Matches are distributed among these distances:
20 15 0.35
21 28 0.65
ACGTcount: A:0.41, C:0.17, G:0.25, T:0.17
Consensus pattern (21 bp):
AAATCGCAACGCGAATTGGGA
Found at i:139545 original size:41 final size:41
Alignment explanation
Indices: 139500--139592 Score: 177
Period size: 41 Copynumber: 2.3 Consensus size: 41
139490 TTTTCCCAAT
139500 TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
*
139541 TCGCAATGTGAATAAGTAAATCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
139582 TCGCAATGCGA
1 TCGCAATGCGA
139593 TACTGACTAT
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 50 1.00
ACGTcount: A:0.40, C:0.17, G:0.25, T:0.18
Consensus pattern (41 bp):
TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
Found at i:139605 original size:41 final size:41
Alignment explanation
Indices: 139519--139653 Score: 132
Period size: 41 Copynumber: 3.3 Consensus size: 41
139509 GAATAAGTAA
* * *
139519 ATCGCAACGCGAATTGGGAAAATCGCAATGTGAATA-AGTA-A
1 ATCGCAACGCGAATTGGGAAAATCGCAATGAG-ATACTG-ACT
*
139560 ATCGCAACGCGAATTGGGAAAATCGCAATGCGATACTGACT
1 ATCGCAACGCGAATTGGGAAAATCGCAATGAGATACTGACT
* * ** *
139601 ATCGCAATGCGATAAT-AAAAAATCGCAATGAGATACTTACT
1 ATCGCAACGCGA-ATTGGGAAAATCGCAATGAGATACTGACT
*
139642 TTCGCAACGCGA
1 ATCGCAACGCGA
139654 TACTGACTTT
Statistics
Matches: 80, Mismatches: 11, Indels: 6
0.82 0.11 0.06
Matches are distributed among these distances:
40 4 0.05
41 74 0.93
42 2 0.03
ACGTcount: A:0.39, C:0.19, G:0.21, T:0.21
Consensus pattern (41 bp):
ATCGCAACGCGAATTGGGAAAATCGCAATGAGATACTGACT
Found at i:139648 original size:20 final size:20
Alignment explanation
Indices: 139623--139675 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
139613 TAATAAAAAA
* *
139623 TCGCAATGAGATACTTACTT
1 TCGCAACGAGATACTGACTT
*
139643 TCGCAACGCGATACTGACTT
1 TCGCAACGAGATACTGACTT
*
139663 TCGCAACGCGATA
1 TCGCAACGAGATA
139676 ATACATAATC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (20 bp):
TCGCAACGAGATACTGACTT
Found at i:139890 original size:22 final size:22
Alignment explanation
Indices: 139862--139905 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
139852 CACTCTCTCA
139862 CCCATCTCCGACGAAATCCGTC
1 CCCATCTCCGACGAAATCCGTC
*
139884 CCCATCTCCGGCGAAATCCGTC
1 CCCATCTCCGACGAAATCCGTC
139906 TATCTCCATC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.20, C:0.45, G:0.16, T:0.18
Consensus pattern (22 bp):
CCCATCTCCGACGAAATCCGTC
Found at i:140157 original size:20 final size:20
Alignment explanation
Indices: 140128--140171 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
140118 GCGATTTTAG
140128 TTTCGCGTTGCGATAGTCAT
1 TTTCGCGTTGCGATAGTCAT
* **
140148 TTTCGTGTTGCGATTTTCAT
1 TTTCGCGTTGCGATAGTCAT
140168 TTTC
1 TTTC
140172 AGAAACTATT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.11, C:0.18, G:0.20, T:0.50
Consensus pattern (20 bp):
TTTCGCGTTGCGATAGTCAT
Found at i:141508 original size:18 final size:18
Alignment explanation
Indices: 141487--141531 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
141477 TCCACTTCGG
*
141487 GAGCCATCACCTCGCCCA
1 GAGCCATCACCTCACCCA
*
141505 GAGCTATCACCTCACCCA
1 GAGCCATCACCTCACCCA
141523 GAGCCATCA
1 GAGCCATCA
141532 TCTGATCGAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.27, C:0.44, G:0.16, T:0.13
Consensus pattern (18 bp):
GAGCCATCACCTCACCCA
Found at i:142060 original size:19 final size:20
Alignment explanation
Indices: 142006--142072 Score: 73
Period size: 20 Copynumber: 3.4 Consensus size: 20
141996 TAGTTTACTT
* *
142006 TCGCAACACGAAAATGACTA
1 TCGCAACGCGGAAATGACTA
*
142026 TCGCAACGCGGAAATGGCTA
1 TCGCAACGCGGAAATGACTA
* **
142046 TCGCAATGC-GAAATGAAAA
1 TCGCAACGCGGAAATGACTA
142065 TCGCAACG
1 TCGCAACG
142073 ACAAAATCGC
Statistics
Matches: 39, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
19 14 0.36
20 25 0.64
ACGTcount: A:0.39, C:0.24, G:0.22, T:0.15
Consensus pattern (20 bp):
TCGCAACGCGGAAATGACTA
Found at i:142118 original size:19 final size:18
Alignment explanation
Indices: 142076--142120 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 18
142066 CGCAACGACA
**
142076 AAATCGCAACGCGAAATG
1 AAATCGCAACGCGAAAAC
142094 AAATCGCAACGCGAAACAC
1 AAATCGCAACGCGAAA-AC
142113 AAATCGCA
1 AAATCGCA
142121 TTGCGATTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
18 16 0.67
19 8 0.33
ACGTcount: A:0.47, C:0.27, G:0.18, T:0.09
Consensus pattern (18 bp):
AAATCGCAACGCGAAAAC
Found at i:142138 original size:19 final size:19
Alignment explanation
Indices: 142116--142269 Score: 114
Period size: 19 Copynumber: 8.6 Consensus size: 19
142106 GAAACACAAA
*
142116 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
*
142135 TCGCGTTGCGA-TTT--TG
1 TCGCGTTGCGATTTTCATT
142151 T--CGTTGCGA-TTTCATT
1 TCGCGTTGCGATTTTCATT
*
142167 TCGCGTTGCGA-TTT--TG
1 TCGCGTTGCGATTTTCATT
142183 T--CGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
* ***
142200 TCGCATTGCGATAGCCATT
1 TCGCGTTGCGATTTTCATT
**
142219 TCCGCGTTGCGATAGTCATT
1 T-CGCGTTGCGATTTTCATT
*
142239 TCGCGTTGCGATTTTAAGTT
1 TCGCGTTGCGATTTTCA-TT
*
142259 TCGTGTTGCGA
1 TCGCGTTGCGA
142270 AAGTAAACTA
Statistics
Matches: 109, Mismatches: 15, Indels: 21
0.75 0.10 0.14
Matches are distributed among these distances:
14 19 0.17
15 3 0.03
16 6 0.06
17 2 0.02
18 14 0.13
19 36 0.33
20 29 0.27
ACGTcount: A:0.13, C:0.20, G:0.24, T:0.43
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:142157 original size:14 final size:14
Alignment explanation
Indices: 142138--142195 Score: 71
Period size: 14 Copynumber: 3.9 Consensus size: 14
142128 TTTCATTTCG
142138 CGTTGCGATTTTGT
1 CGTTGCGATTTTGT
*
142152 CGTTGCGATTTCATTT
1 CGTTGCGATTT--TGT
142168 CGCGTTGCGATTTTGT
1 --CGTTGCGATTTTGT
142184 CGTTGCGATTTT
1 CGTTGCGATTTT
142196 CATTTCGCAT
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
14 23 0.61
16 4 0.11
18 11 0.29
ACGTcount: A:0.09, C:0.17, G:0.26, T:0.48
Consensus pattern (14 bp):
CGTTGCGATTTTGT
Found at i:142202 original size:33 final size:33
Alignment explanation
Indices: 142121--142211 Score: 166
Period size: 32 Copynumber: 2.8 Consensus size: 33
142111 ACAAATCGCA
142121 TTGCGATTTTCATTTCGCGTTGCGATTTTGTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTTTGTCG
142154 TTGCGA-TTTCATTTCGCGTTGCGATTTTGTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTTTGTCG
*
142186 TTGCGATTTTCATTTCGCATTGCGAT
1 TTGCGATTTTCATTTCGCGTTGCGAT
142212 AGCCATTTCC
Statistics
Matches: 56, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
32 32 0.57
33 24 0.43
ACGTcount: A:0.11, C:0.19, G:0.23, T:0.47
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTTTGTCG
Found at i:142230 original size:20 final size:19
Alignment explanation
Indices: 142196--142250 Score: 83
Period size: 20 Copynumber: 2.8 Consensus size: 19
142186 TTGCGATTTT
*
142196 CATTTCGCATTGCGATAGC
1 CATTTCGCGTTGCGATAGC
*
142215 CATTTCCGCGTTGCGATAGT
1 CATTT-CGCGTTGCGATAGC
142235 CATTTCGCGTTGCGAT
1 CATTTCGCGTTGCGAT
142251 TTTAAGTTTC
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
19 16 0.48
20 17 0.52
ACGTcount: A:0.16, C:0.25, G:0.24, T:0.35
Consensus pattern (19 bp):
CATTTCGCGTTGCGATAGC
Found at i:144256 original size:14 final size:14
Alignment explanation
Indices: 144237--144290 Score: 63
Period size: 14 Copynumber: 3.5 Consensus size: 14
144227 CGAAATGGCT
144237 ATCGCAACGAGAAA
1 ATCGCAACGAGAAA
144251 ATCGCAATGCGAAATGAAA
1 ATCGCAA--CG--A-GAAA
144270 ATCGCAACGAGAAA
1 ATCGCAACGAGAAA
144284 ATCGCAA
1 ATCGCAA
144291 TGCGATTTTC
Statistics
Matches: 35, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
14 18 0.51
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 11 0.31
ACGTcount: A:0.48, C:0.20, G:0.20, T:0.11
Consensus pattern (14 bp):
ATCGCAACGAGAAA
Found at i:144308 original size:33 final size:33
Alignment explanation
Indices: 144218--144295 Score: 120
Period size: 33 Copynumber: 2.4 Consensus size: 33
144208 AAAACAGACT
* ***
144218 ATCGCAACGCGAAATGGCTATCGCAACGAGAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAAA
144251 ATCGCAATGCGAAATGAAAATCGCAACGAGAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAAA
144284 ATCGCAATGCGA
1 ATCGCAATGCGA
144296 TTTTCATTTC
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 41 1.00
ACGTcount: A:0.42, C:0.22, G:0.23, T:0.13
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGAGAAA
Found at i:144371 original size:20 final size:20
Alignment explanation
Indices: 144321--144371 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
144311 GCGATTTTTT
* *
144321 CGTTGCGATAACCATTTTCG
1 CGTTGCGATAGCCATATTCG
144341 CGTTGCGATAGCCATATTCG
1 CGTTGCGATAGCCATATTCG
144361 CGTTGCGATAG
1 CGTTGCGATAG
144372 TCAAATGAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.20, C:0.24, G:0.25, T:0.31
Consensus pattern (20 bp):
CGTTGCGATAGCCATATTCG
Found at i:145458 original size:24 final size:24
Alignment explanation
Indices: 145431--145484 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
145421 GTATTCGAAA
* *
145431 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATATTGGTCAATACACGGAC
*
145455 TTTGATATTGGTCAATACACGGAT
1 TTTGATATTGGTCAATACACGGAC
145479 TTTGAT
1 TTTGAT
145485 GATGTTTCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.24, C:0.17, G:0.20, T:0.39
Consensus pattern (24 bp):
TTTGATATTGGTCAATACACGGAC
Found at i:145676 original size:12 final size:12
Alignment explanation
Indices: 145659--145683 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
145649 ATATAATCCT
145659 GAAGAAGAAAAA
1 GAAGAAGAAAAA
145671 GAAGAAGAAAAA
1 GAAGAAGAAAAA
145683 G
1 G
145684 TCTCCGAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAAAA
Found at i:148002 original size:19 final size:19
Alignment explanation
Indices: 147980--148110 Score: 94
Period size: 19 Copynumber: 7.7 Consensus size: 19
147970 GGAAATTACT
147980 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
147999 ATCGCAA--CG--A-GAGA
1 ATCGCAATGCGAAATGAAA
148013 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
* *
148032 ATCGCAA--CG--CT-AAT
1 ATCGCAATGCGAAATGAAA
*
148046 TTCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
**
148065 ATCGCAA--CG--A-GGGA
1 ATCGCAATGCGAAATGAAA
148079 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
148098 ATCGCAACGCGAA
1 ATCGCAATGCGAA
148111 TTTAATTTCG
Statistics
Matches: 84, Mismatches: 13, Indels: 30
0.66 0.10 0.24
Matches are distributed among these distances:
14 27 0.32
15 3 0.04
16 6 0.07
17 6 0.07
18 3 0.04
19 39 0.46
ACGTcount: A:0.43, C:0.20, G:0.23, T:0.15
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:148022 original size:33 final size:33
Alignment explanation
Indices: 147980--148106 Score: 202
Period size: 33 Copynumber: 3.8 Consensus size: 33
147970 GGAAATTACT
147980 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
**
148013 ATCGCAATGCGAAATGAAAATCGCAACGCTA-A
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
* *
148045 TTTCGCAATGCGAAATGAAAATCGCAACGAGGGA
1 -ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
148079 ATCGCAATGCGAAATGAAAATCGCAACG
1 ATCGCAATGCGAAATGAAAATCGCAACG
148107 CGAATTTAAT
Statistics
Matches: 85, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
32 1 0.01
33 83 0.98
34 1 0.01
ACGTcount: A:0.43, C:0.20, G:0.23, T:0.15
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
Found at i:148087 original size:66 final size:66
Alignment explanation
Indices: 147981--148113 Score: 248
Period size: 66 Copynumber: 2.0 Consensus size: 66
147971 GAAATTACTA
*
147981 TCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAACGCTAAT
1 TCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAACGCGAAT
148046 T
66 T
*
148047 TCGCAATGCGAAATGAAAATCGCAACGAGGGAATCGCAATGCGAAATGAAAATCGCAACGCGAAT
1 TCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAACGCGAAT
148112 T
66 T
148113 T
1 T
148114 AATTTCGCGT
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 65 1.00
ACGTcount: A:0.41, C:0.20, G:0.23, T:0.17
Consensus pattern (66 bp):
TCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAACGCGAAT
T
Found at i:148128 original size:19 final size:20
Alignment explanation
Indices: 148106--148148 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
148096 AAATCGCAAC
148106 GCGAATTT-AATTTCGCGTT
1 GCGAATTTCAATTTCGCGTT
* *
148125 GCGATTTTCATTTTCGCGTT
1 GCGAATTTCAATTTCGCGTT
148145 GCGA
1 GCGA
148149 TTCTCTCGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 7 0.33
20 14 0.67
ACGTcount: A:0.16, C:0.19, G:0.23, T:0.42
Consensus pattern (20 bp):
GCGAATTTCAATTTCGCGTT
Found at i:148133 original size:14 final size:14
Alignment explanation
Indices: 148134--148167 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
148124 TGCGATTTTC
148134 ATTTTCGCGTTGCG
1 ATTTTCGCGTTGCG
* *
148148 ATTCTCTCGTTGCG
1 ATTTTCGCGTTGCG
148162 ATTTTC
1 ATTTTC
148168 ATTTCGCATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.09, C:0.24, G:0.21, T:0.47
Consensus pattern (14 bp):
ATTTTCGCGTTGCG
Found at i:148307 original size:14 final size:14
Alignment explanation
Indices: 148288--148324 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
148278 CATCAATTAA
148288 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
148302 ACAAATCACCTTTT
1 ACAAATCAACTTTT
148316 ACAAATCAA
1 ACAAATCAA
148325 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.24, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:150150 original size:31 final size:31
Alignment explanation
Indices: 150112--150267 Score: 260
Period size: 31 Copynumber: 5.0 Consensus size: 31
150102 CCCGAAGGAC
* *
150112 CAGTCCATA-GATTCCGAAGAACCTAGGTAAT
1 CAGTCCATATG-TTCCGAAGAACATAGGTAAA
* *
150143 CAGTCCATATGTCCCGAAGGACATAGGTAAA
1 CAGTCCATATGTTCCGAAGAACATAGGTAAA
150174 CAGTCCATATGTTCCGAAGAACATAGGTAAA
1 CAGTCCATATGTTCCGAAGAACATAGGTAAA
150205 CAGTCCATATGTTCCGAAGAACATAGGTAAA
1 CAGTCCATATGTTCCGAAGAACATAGGTAAA
150236 CAGTCCATATGTTCCGAAGAACATAGGTAAA
1 CAGTCCATATGTTCCGAAGAACATAGGTAAA
150267 C
1 C
150268 CCTCGACCCT
Statistics
Matches: 118, Mismatches: 6, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
31 117 0.99
32 1 0.01
ACGTcount: A:0.37, C:0.21, G:0.20, T:0.22
Consensus pattern (31 bp):
CAGTCCATATGTTCCGAAGAACATAGGTAAA
Found at i:150471 original size:23 final size:24
Alignment explanation
Indices: 150445--150491 Score: 78
Period size: 23 Copynumber: 2.0 Consensus size: 24
150435 ATATACTTGT
*
150445 TTTCACATATATA-TTTCATATCA
1 TTTCACATATACACTTTCATATCA
150468 TTTCACATATACACTTTCATATCA
1 TTTCACATATACACTTTCATATCA
150492 CATGCCATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 12 0.55
24 10 0.45
ACGTcount: A:0.34, C:0.21, G:0.00, T:0.45
Consensus pattern (24 bp):
TTTCACATATACACTTTCATATCA
Found at i:152320 original size:21 final size:20
Alignment explanation
Indices: 152292--152355 Score: 65
Period size: 21 Copynumber: 3.1 Consensus size: 20
152282 CATGTGAATC
*
152292 GGCCTCTTGAATGGTGGGAG
1 GGCCTCTTGAACGGTGGGAG
* * **
152312 GGACCTCTTCAACGATGACAG
1 GG-CCTCTTGAACGGTGGGAG
152333 TGGCCTCTTGAACGGTGGGAG
1 -GGCCTCTTGAACGGTGGGAG
152354 GG
1 GG
152356 GACTCTCGAG
Statistics
Matches: 33, Mismatches: 9, Indels: 4
0.72 0.20 0.09
Matches are distributed among these distances:
20 4 0.12
21 27 0.82
22 2 0.06
ACGTcount: A:0.19, C:0.20, G:0.39, T:0.22
Consensus pattern (20 bp):
GGCCTCTTGAACGGTGGGAG
Found at i:152380 original size:42 final size:41
Alignment explanation
Indices: 152292--152417 Score: 119
Period size: 42 Copynumber: 3.0 Consensus size: 41
152282 CATGTGAATC
* * * * *
152292 GGCCTCTTGAATGGTGGGA-GGGACCTCTTCAACGATGACAGT
1 GGCCTCTTGAACGGTGGGAGGGGA-CTC-TCGAGGATGATAGG
152334 GGCCTCTTGAACGGTGGGAGGGGACTCTCGAGGAATGATAGG
1 GGCCTCTTGAACGGTGGGAGGGGACTCTCGAGG-ATGATAGG
* * * * *
152376 GGCCTCTTCAACGATAGGAGTGGACTCTTGAGGGATGATAGG
1 GGCCTCTTGAACGGTGGGAGGGGACTCTCGA-GGATGATAGG
152418 CGAGTCGGGC
Statistics
Matches: 71, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
41 4 0.06
42 61 0.86
43 6 0.08
ACGTcount: A:0.22, C:0.18, G:0.37, T:0.22
Consensus pattern (41 bp):
GGCCTCTTGAACGGTGGGAGGGGACTCTCGAGGATGATAGG
Found at i:154453 original size:20 final size:19
Alignment explanation
Indices: 154422--154600 Score: 135
Period size: 19 Copynumber: 9.8 Consensus size: 19
154412 TCTTTTGGTT
154422 GAAATGAAAATCGCAACGA
1 GAAATGAAAATCGCAACGA
* *
154441 GATAATGAGAATCGCAACGCG
1 GA-AATGAAAATCGCAACG-A
**
154462 GAAATGACTATCGCAACGA
1 GAAATGAAAATCGCAACGA
*
154481 G--A-G--AATCGCAACGC
1 GAAATGAAAATCGCAACGA
** *
154495 GAAATGACTATTG---CGA
1 GAAATGAAAATCGCAACGA
** * *
154511 -CCA-GACAATCGCAACGC
1 GAAATGAAAATCGCAACGA
*
154528 GAAATGAAAATCGCAACGC
1 GAAATGAAAATCGCAACGA
*
154547 GAAATGAAAATCGCAACGC
1 GAAATGAAAATCGCAACGA
*
154566 GAAATGAAAATCGCAACGC
1 GAAATGAAAATCGCAACGA
154585 GAAATGAAAATCGCAA
1 GAAATGAAAATCGCAA
154601 TGCGATTTTG
Statistics
Matches: 130, Mismatches: 18, Indels: 24
0.76 0.10 0.14
Matches are distributed among these distances:
14 16 0.12
15 1 0.01
16 4 0.03
17 4 0.03
18 1 0.01
19 73 0.56
20 29 0.22
21 2 0.02
ACGTcount: A:0.44, C:0.21, G:0.22, T:0.12
Consensus pattern (19 bp):
GAAATGAAAATCGCAACGA
Found at i:154504 original size:33 final size:33
Alignment explanation
Indices: 154447--154583 Score: 139
Period size: 33 Copynumber: 4.0 Consensus size: 33
154437 ACGAGATAAT
**
154447 GAGAATCGCAACGCGGAAATGACTATCGCAACGA
1 GAGAATCGCAACGC-GAAATGAAAATCGCAACGA
** * * *
154481 GAGAATCGCAACGCGAAATGACTATTGCGACCA
1 GAGAATCGCAACGCGAAATGAAAATCGCAACGA
*
154514 GACAATCGCAACGCGAAATGAAAATCGCAACGCGAAA
1 GAGAATCGCAACGCGAAATGAAAATCGCAA--CG--A
*
154551 TGAAAATCGCAACGCGAAATGAAAATCGCAACG
1 -GAGAATCGCAACGCGAAATGAAAATCGCAACG
154584 CGAAATGAAA
Statistics
Matches: 88, Mismatches: 10, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
33 41 0.47
34 14 0.16
35 1 0.01
36 2 0.02
37 1 0.01
38 29 0.33
ACGTcount: A:0.42, C:0.23, G:0.23, T:0.12
Consensus pattern (33 bp):
GAGAATCGCAACGCGAAATGAAAATCGCAACGA
Found at i:154539 original size:19 final size:19
Alignment explanation
Indices: 154517--154605 Score: 169
Period size: 19 Copynumber: 4.7 Consensus size: 19
154507 GCGACCAGAC
154517 AATCGCAACGCGAAATGAA
1 AATCGCAACGCGAAATGAA
154536 AATCGCAACGCGAAATGAA
1 AATCGCAACGCGAAATGAA
154555 AATCGCAACGCGAAATGAA
1 AATCGCAACGCGAAATGAA
154574 AATCGCAACGCGAAATGAA
1 AATCGCAACGCGAAATGAA
*
154593 AATCGCAATGCGA
1 AATCGCAACGCGA
154606 TTTTGGTTTC
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
19 69 1.00
ACGTcount: A:0.46, C:0.21, G:0.21, T:0.11
Consensus pattern (19 bp):
AATCGCAACGCGAAATGAA
Found at i:154568 original size:38 final size:38
Alignment explanation
Indices: 154422--154605 Score: 181
Period size: 38 Copynumber: 5.1 Consensus size: 38
154412 TCTTTTGGTT
* *
154422 GAAATGAAAATCGCAACGAGATAATGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGCGA-AATGAAAATCGCAACGC
** *
154461 GGAAATGACTATCGCAA--CG--A-GAGAATCGCAACGC
1 -GAAATGAAAATCGCAACGCGAAATGAAAATCGCAACGC
** * * *
154495 GAAATGACTATTGCGAC-C---A-GACAATCGCAACGC
1 GAAATGAAAATCGCAACGCGAAATGAAAATCGCAACGC
154528 GAAATGAAAATCGCAACGCGAAATGAAAATCGCAACGC
1 GAAATGAAAATCGCAACGCGAAATGAAAATCGCAACGC
*
154566 GAAATGAAAATCGCAACGCGAAATGAAAATCGCAATGC
1 GAAATGAAAATCGCAACGCGAAATGAAAATCGCAACGC
154604 GA
1 GA
154606 TTTTGGTTTC
Statistics
Matches: 126, Mismatches: 12, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
33 41 0.33
34 16 0.13
35 1 0.01
37 1 0.01
38 53 0.42
40 14 0.11
ACGTcount: A:0.43, C:0.21, G:0.23, T:0.12
Consensus pattern (38 bp):
GAAATGAAAATCGCAACGCGAAATGAAAATCGCAACGC
Found at i:154634 original size:19 final size:19
Alignment explanation
Indices: 154601--154681 Score: 73
Period size: 19 Copynumber: 4.5 Consensus size: 19
154591 AAAATCGCAA
**
154601 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTTATTTCGCGT
154620 TGCGATTTTTATTTCGCGT
1 TGCGATTTTTATTTCGCGT
*
154639 TGCGA---TTA--TCTCGT
1 TGCGATTTTTATTTCGCGT
**
154653 TGCGATAGTTATTTCCGCGT
1 TGCGATTTTTATTT-CGCGT
154673 TGCGATTTT
1 TGCGATTTT
154682 CATTCTCGAA
Statistics
Matches: 50, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
14 10 0.20
16 3 0.06
17 3 0.06
19 23 0.46
20 11 0.22
ACGTcount: A:0.11, C:0.17, G:0.25, T:0.47
Consensus pattern (19 bp):
TGCGATTTTTATTTCGCGT
Found at i:155249 original size:20 final size:20
Alignment explanation
Indices: 155198--155250 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
155188 GCGCTATGTA
*
155198 AATCGCGTTGCAAAAGTCAG
1 AATCGCGTTGCGAAAGTCAG
155218 AATCGCGTTGCGAAAGTCAG
1 AATCGCGTTGCGAAAGTCAG
* *
155238 TATCTCGTTGCGA
1 AATCGCGTTGCGA
155251 TTTTGTATTA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (20 bp):
AATCGCGTTGCGAAAGTCAG
Found at i:155284 original size:20 final size:20
Alignment explanation
Indices: 155259--155312 Score: 99
Period size: 20 Copynumber: 2.7 Consensus size: 20
155249 GATTTTGTAT
155259 TATCGCATTGCGATAGTAAG
1 TATCGCATTGCGATAGTAAG
*
155279 TATCGCATTGCGATAGTCAG
1 TATCGCATTGCGATAGTAAG
155299 TATCGCATTGCGAT
1 TATCGCATTGCGAT
155313 TTTCCCAATT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (20 bp):
TATCGCATTGCGATAGTAAG
Found at i:155331 original size:61 final size:61
Alignment explanation
Indices: 155199--155333 Score: 146
Period size: 61 Copynumber: 2.2 Consensus size: 61
155189 CGCTATGTAA
* * * * * * ** *
155199 ATCGCGTTGCAAAAGTCAGAATCGCGTTGCGAAAGTCAGTATCTCGTTGCGATTTTGTATT
1 ATCGCGTTGCGATAGTAAGAATCGCATTGCGAAAGTCAGTATCGCATTGCGATTTTCCAAT
* * *
155260 ATCGCATTGCGATAGTAAGTATCGCATTGCGATAGTCAGTATCGCATTGCGATTTTCCCAAT
1 ATCGCGTTGCGATAGTAAGAATCGCATTGCGAAAGTCAGTATCGCATTGCGATTTT-CCAAT
155322 -TCGCGTTGCGAT
1 ATCGCGTTGCGAT
155334 TTACTTATTC
Statistics
Matches: 60, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
61 58 0.97
62 2 0.03
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.33
Consensus pattern (61 bp):
ATCGCGTTGCGATAGTAAGAATCGCATTGCGAAAGTCAGTATCGCATTGCGATTTTCCAAT
Found at i:164195 original size:16 final size:16
Alignment explanation
Indices: 164160--164203 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 16
164150 ATATATATAT
* * *
164160 ATATATATATATATAT
1 ATATATATATTTAAAC
164176 ATATATATATTTAAAC
1 ATATATATATTTAAAC
*
164192 ATATATAGATTT
1 ATATATATATTT
164204 TAAAAATGCG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (16 bp):
ATATATATATTTAAAC
Found at i:164198 original size:2 final size:2
Alignment explanation
Indices: 164150--164185 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
164140 TGATCAATAA
164150 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
164186 TTAAACATAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:175058 original size:29 final size:31
Alignment explanation
Indices: 175018--175096 Score: 92
Period size: 33 Copynumber: 2.6 Consensus size: 31
175008 CGCTGTTCAT
* *
175018 AAAA-CAAATACTAATTTGTTGGC-CAAG-A
1 AAAAGCAAATACTAACTTGTTGGCGAAAGAA
*
175046 AAAAGCAAATACTACCTTGTTGGCGAAAGAAAA
1 AAAAGCAAATACTAACTTGTTGGCGAAAG--AA
175079 AAAAGCAAATACTAACTT
1 AAAAGCAAATACTAACTT
175097 AAGAAGAATT
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
28 4 0.10
29 17 0.40
30 3 0.07
33 18 0.43
ACGTcount: A:0.49, C:0.15, G:0.14, T:0.22
Consensus pattern (31 bp):
AAAAGCAAATACTAACTTGTTGGCGAAAGAA
Found at i:175078 original size:30 final size:28
Alignment explanation
Indices: 175018--175079 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 28
175008 CGCTGTTCAT
* *
175018 AAAACAAATACTAATTTGTTGGCCAAGA
1 AAAACAAATACTAACTTGTTGGCAAAGA
*
175046 AAAAGCAAATACTACCTTGTTGGCGAAAGA
1 AAAA-CAAATACTAACTTGTTGGC-AAAGA
175076 AAAA
1 AAAA
175080 AAAGCAAATA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 4 0.14
29 17 0.59
30 8 0.28
ACGTcount: A:0.48, C:0.15, G:0.16, T:0.21
Consensus pattern (28 bp):
AAAACAAATACTAACTTGTTGGCAAAGA
Found at i:183000 original size:22 final size:22
Alignment explanation
Indices: 182970--183036 Score: 82
Period size: 22 Copynumber: 3.0 Consensus size: 22
182960 CACCACAGCT
*
182970 CGTATAATT-CACCGAAGTGCCA
1 CGTAGAATTGCACCG-AGTGCCA
*
182992 CGTAGAATTGCACCGAGTGCCG
1 CGTAGAATTGCACCGAGTGCCA
*
183014 CGTAGAATTGCACTGTAGTGCCA
1 CGTAGAATTGCACCG-AGTGCCA
183037 TATAATAATG
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
22 28 0.72
23 11 0.28
ACGTcount: A:0.27, C:0.25, G:0.25, T:0.22
Consensus pattern (22 bp):
CGTAGAATTGCACCGAGTGCCA
Done.