Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002551.1 Hibiscus syriacus cultivar Beakdansim tig00005178_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84137

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4130--4232
34
3.1
34
88
4
129
45
3
6
43
1.48
4104--4232
33
3.9
33
81
7
136
44
3
7
44
1.48
4159--4315
36
4.4
35
77
15
117
48
3
7
40
1.48
4233--4397
36
4.3
36
77
12
143
49
2
6
41
1.42
4164--4415
78
3.3
78
78
10
252
49
2
5
42
1.41
6522--6553
16
2.0
17
88
11
50
31
0
3
65
1.08
9949--10050
39
2.6
40
76
6
102
31
16
26
25
1.97
15293--15339
2
23.5
2
100
0
94
48
0
0
51
1.00
17055--17109
2
27.5
2
100
0
110
49
0
0
50
1.00
23491--23516
13
2.0
13
100
0
52
15
15
23
46
1.83
32563--32603
9
4.7
9
82
14
50
17
34
29
19
1.94
32571--32605
18
1.9
18
94
0
61
17
34
31
17
1.93
40303--40369
16
4.1
16
82
7
73
37
1
31
29
1.67
40303--40369
34
2.0
32
85
5
89
37
1
31
29
1.67
41121--41203
43
2.0
42
97
2
157
37
39
12
10
1.78
40892--41432
269
2.1
258
86
7
750
36
29
11
22
1.89
43293--43331
19
2.0
20
90
5
62
33
2
0
64
1.08
50820--50874
24
2.3
24
90
6
85
14
5
16
63
1.48
50829--50871
14
3.1
14
82
0
50
16
4
13
65
1.43
50938--50982
15
2.9
15
90
6
63
51
2
0
46
1.13
57657--57704
21
2.3
20
79
10
51
43
0
2
54
1.12
57667--57701
14
2.4
14
90
4
52
40
0
0
60
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59775--59825
2
26.5
2
76
7
52
49
0
0
50
1.00
71017--71050
18
1.9
17
88
5
50
61
2
2
32
1.26
83250--83289
21
1.9
21
84
0
53
2
32
0
65
1.06

Tables:   1

The End!