Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002555.1 Hibiscus syriacus cultivar Beakdansim tig00005186_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  118096

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
211--254
23
1.9
23
82
17
56
61
22
6
9
1.50
1774--1798
2
12.5
2
100
0
50
48
0
0
52
1.00
4482--4512
2
15.5
2
100
0
62
48
0
0
51
1.00
13941--14131
75
2.5
74
83
3
247
41
14
11
32
1.81
18943--18981
17
2.3
17
86
8
53
64
2
0
33
1.08
20883--21134
130
1.9
131
91
2
418
25
10
27
36
1.89
22918--22951
17
2.0
17
100
0
68
35
5
23
35
1.79
25555--25580
2
13.0
2
100
0
52
50
0
0
50
1.00
29037--29081
21
2.1
21
87
0
63
31
28
24
15
1.96
29509--29565
20
2.7
22
78
15
66
43
5
14
36
1.67
30095--30250
31
5.0
31
96
1
269
19
19
23
37
1.94
33379--33423
21
2.1
21
84
8
56
33
28
22
15
1.95
33848--33904
20
2.7
22
78
15
66
43
5
14
36
1.67
34434--34589
31
5.0
31
93
1
233
20
17
23
37
1.94
36403--36433
16
2.0
16
93
6
55
0
12
6
80
0.89
36866--36909
3
15.0
3
85
4
54
59
0
0
40
0.98
36869--36914
24
2.0
23
91
4
74
56
0
0
43
0.99
37658--37739
21
3.8
21
73
6
83
29
26
19
24
1.98
37654--37745
44
2.1
43
87
2
130
31
23
20
23
1.98
42893--43023
61
2.1
61
84
2
165
28
29
15
27
1.96
48158--48230
37
2.0
37
86
0
101
27
12
28
31
1.93
53037--53108
23
3.3
24
76
18
77
34
23
15
26
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53966--53993
12
2.3
12
100
0
56
21
28
0
50
1.49
54671--54707
14
2.6
14
100
0
74
54
16
8
21
1.68
57859--58000
64
2.2
64
81
3
160
26
22
17
33
1.96
61106--61136
11
2.8
11
95
0
53
35
22
12
29
1.91
63879--63990
19
5.9
19
94
2
190
34
15
28
21
1.94
66227--66317
33
2.8
33
93
1
148
32
6
15
45
1.72
76432--76464
14
2.4
14
90
5
50
30
0
3
66
1.06
79254--79282
12
2.4
12
100
0
58
34
6
6
51
1.55
80564--80607
2
22.0
2
100
0
88
50
0
0
50
1.00
80620--80644
11
2.3
11
100
0
50
16
8
0
76
1.02
80651--80722
21
3.4
22
80
14
80
18
4
5
72
1.21
80683--80742
21
2.9
21
79
15
63
13
8
1
76
1.08
80698--80825
29
4.4
29
70
15
86
16
10
0
72
1.15
80766--80859
21
4.5
21
78
13
79
18
8
1
72
1.16
85042--85122
29
2.8
29
96
3
146
18
22
14
44
1.86
85536--85661
64
2.0
64
81
9
150
26
17
19
36
1.94
85627--85671
19
2.4
19
96
0
81
22
28
22
26
1.99
103854--103887
15
2.3
15
94
0
59
32
32
20
14
1.93
104393--104549
64
2.5
63
80
10
185
26
17
20
35
1.95
105950--106146
99
2.0
99
88
2
297
37
16
16
29
1.91
107060--107520
145
3.2
146
89
1
692
36
21
15
26
1.93
107574--107748
65
2.8
63
83
4
221
36
20
14
28
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107886--108224
85
4.0
85
86
1
455
35
22
17
24
1.95
110121--110158
15
2.5
15
83
8
51
13
10
2
73
1.19
110190--110227
11
3.5
11
86
10
51
15
2
0
81
0.80
110201--110292
22
4.6
18
71
20
67
17
1
5
76
1.04
110250--110297
23
2.1
23
84
7
62
16
6
4
72
1.20
110258--110313
23
2.4
23
82
8
60
16
8
1
73
1.17
110332--110440
14
7.4
14
71
22
57
15
10
1
72
1.19
110414--110459
18
2.6
18
86
13
60
17
6
0
76
1.00

Tables:   1

The End!