genome.fa.s2557.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002557.1 Hibiscus syriacus cultivar Beakdansim tig00005188_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93052

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6555--6714	65	2.5	65	84	7	202	30	18	21	30	1.97
11348--11433	3	28.0	3	83	9	111	37	0	0	62	0.95
12827--13056	116	1.9	120	82	11	285	39	8	8	43	1.66
24221--24259	16	2.6	15	84	11	53	79	0	20	0	0.73
24227--24278	23	2.2	23	89	3	77	76	0	23	0	0.78
25394--25824	92	4.7	92	98	0	801	26	14	23	34	1.94
26533--27210	113	6.0	113	83	3	792	39	12	18	30	1.87
26531--27210	229	3.0	228	86	3	910	38	12	18	30	1.87
27036--27080	24	1.9	23	82	13	56	48	6	26	17	1.72
27436--27506	3	23.0	3	77	11	72	38	0	1	60	1.06
28905--29139	116	2.0	121	81	11	279	40	8	8	42	1.65
40786--40827	20	2.0	21	90	4	68	40	9	14	35	1.78
40831--40885	23	2.4	23	78	6	58	40	9	21	29	1.84
44144--44194	23	2.2	23	100	0	102	37	7	43	11	1.71
44385--44426	20	2.0	21	90	4	68	40	9	14	35	1.78
48656--48788	42	3.3	39	78	10	115	48	18	9	23	1.77
48689--48788	42	2.4	42	86	0	146	52	18	9	21	1.72
49312--49393	39	2.1	39	84	13	107	54	1	1	42	1.15
57164--57203	21	1.9	21	85	10	55	27	5	2	65	1.27
58291--58317	2	13.5	2	100	0	54	48	0	0	51	1.00
66448--66628	89	2.0	89	95	0	326	22	19	23	34	1.97
75343--75409	34	1.9	34	82	14	84	47	19	11	20	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82295--82324	15	2.0	15	93	0	51	26	16	6	50	1.70
85037--85061	12	2.1	12	100	0	50	32	8	0	60	1.26
86693--86721	2	14.5	2	100	0	58	51	0	0	48	1.00
87213--87279	30	2.2	30	75	0	71	19	32	19	28	1.96
90321--90439	59	2.0	59	82	6	143	33	13	13	39	1.84

Tables:   1

The End!