genome.fa.s2558.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002558.1 Hibiscus syriacus cultivar Beakdansim tig00005190_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59120

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2868--2996	35	3.7	34	86	6	116	31	6	18	43	1.75
2896--3013	35	3.3	35	89	6	175	29	5	20	44	1.72
4676--4706	4	7.8	4	100	0	62	77	0	0	22	0.77
8122--8179	23	2.5	23	82	2	80	39	1	13	44	1.54
11641--11674	17	2.0	17	100	0	68	52	17	11	17	1.73
15588--15641	21	2.6	21	100	0	108	24	25	18	31	1.97
20036--20081	19	2.4	19	88	0	74	23	19	34	21	1.96
22993--23018	4	6.5	4	100	0	52	0	23	0	76	0.78
23133--23175	21	2.0	21	86	8	61	32	41	2	23	1.67
28070--28227	21	7.8	20	73	8	88	39	24	17	18	1.92
28195--28383	20	9.4	20	82	4	202	36	26	17	19	1.94
29296--29320	12	2.1	12	100	0	50	72	0	28	0	0.86
31618--31851	72	3.3	72	81	8	295	46	17	22	13	1.83
31604--31873	53	5.1	52	90	8	415	46	17	22	13	1.83
31585--31873	72	4.1	68	79	13	275	46	18	22	13	1.84
31604--31873	105	2.6	105	91	7	426	46	17	22	13	1.83
31888--31976	20	4.8	20	81	16	120	13	23	15	47	1.81
31870--31976	54	2.0	53	96	1	196	14	25	15	44	1.84
32067--32103	14	2.6	14	86	0	56	45	18	0	35	1.50
34023--34195	19	9.6	19	76	12	141	45	23	19	11	1.83
34098--34190	33	2.8	33	91	0	150	46	20	20	12	1.83
34207--34265	14	3.9	14	74	20	55	8	16	27	47	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34191--34314	33	3.7	33	89	1	176	8	17	26	46	1.77
34191--34249	19	3.4	19	77	22	83	6	15	30	47	1.71
34362--34634	93	3.1	87	90	6	333	44	19	13	22	1.85
34412--34634	93	2.4	93	99	0	437	44	18	13	22	1.85
36319--36415	20	5.2	20	72	18	100	46	17	24	11	1.81
36317--36381	21	3.1	21	82	4	96	47	15	26	10	1.78
36366--36422	14	3.7	14	75	20	60	43	22	24	8	1.81
36317--36439	33	3.5	33	90	8	165	46	18	24	10	1.81
36456--36512	14	3.7	14	75	20	60	8	24	22	43	1.81
36440--36520	33	2.5	33	95	0	144	8	22	22	46	1.78
36497--36572	21	3.7	21	83	3	109	11	25	17	46	1.82
36496--36573	41	1.9	41	97	0	147	12	25	16	44	1.83
36652--36722	33	2.2	33	89	5	108	49	15	23	11	1.77
37102--37274	20	8.6	20	81	6	188	17	19	26	36	1.93
37242--37339	21	4.8	20	75	10	81	21	19	21	37	1.94
37242--37340	42	2.4	43	77	11	100	21	19	22	37	1.94
38226--38261	2	18.0	2	100	0	72	50	0	0	50	1.00
38847--38969	45	2.7	46	87	3	187	31	19	7	41	1.79
57168--57214	20	2.4	19	85	3	58	42	10	12	34	1.78
57817--57936	31	3.9	31	84	2	161	37	18	16	27	1.92
57817--57938	62	2.0	62	91	3	201	37	18	16	27	1.92
58770--58925	65	2.4	65	89	7	230	28	17	22	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58770--58973	65	3.2	64	81	11	229	27	17	23	31	1.97

Tables:   1

The End!