genome.fa.s256.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000256.1 Hibiscus syriacus cultivar Beakdansim tig00000468_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  102689

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28--60	17	2.0	17	88	5	50	33	18	0	48	1.48
427--461	15	2.2	16	90	5	54	31	14	2	51	1.57
5932--5998	33	2.0	33	97	0	125	26	16	28	28	1.97
10084--10135	25	2.1	25	88	0	77	44	15	5	34	1.70
12573--12626	22	2.6	20	77	16	56	35	12	25	25	1.92
13155--13213	23	2.7	23	85	15	81	22	22	27	28	1.99
14811--14858	13	3.7	13	91	0	78	27	20	18	33	1.96
14839--15004	85	2.0	85	88	0	251	29	21	18	30	1.97
15023--15047	12	2.1	12	100	0	50	40	0	0	60	0.97
21946--21983	18	2.1	18	95	0	67	26	18	23	31	1.97
25687--25731	21	2.1	21	91	0	72	13	31	20	35	1.91
30292--30357	18	3.7	18	76	11	73	34	7	7	50	1.59
30484--30565	41	2.0	41	97	0	155	23	17	18	41	1.90
33716--33761	21	2.2	21	88	0	65	21	10	36	30	1.88
33799--33838	21	1.9	21	89	0	62	27	27	22	22	1.99
41441--41514	25	3.2	25	62	33	65	17	18	22	40	1.91
41439--41526	44	2.0	44	100	0	176	18	18	22	40	1.91
48118--48175	23	2.5	23	81	10	82	41	13	15	29	1.86
48190--48273	30	2.7	32	83	5	102	61	10	9	17	1.54
48472--48780	43	7.2	42	82	4	316	34	19	21	24	1.96
48472--48780	128	2.4	128	81	5	347	34	19	21	24	1.96
51830--51872	20	2.2	20	88	8	63	30	9	25	34	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54430--54553	63	2.0	63	85	6	171	40	20	21	16	1.91
56459--56501	20	2.2	20	88	8	63	30	9	25	34	1.87
56600--56662	33	1.9	33	86	0	90	36	20	23	19	1.95
56931--57065	39	3.4	40	70	23	122	32	19	14	33	1.92
56896--57114	80	2.7	82	83	4	275	32	18	15	33	1.92
60214--60360	73	2.0	73	93	2	251	14	28	16	40	1.88
66206--66264	3	20.3	3	75	13	52	67	1	3	27	1.16
66206--66275	29	2.6	27	82	12	90	65	2	2	28	1.21
66292--66353	29	2.2	29	80	13	67	61	1	6	30	1.31
67563--67654	3	31.0	3	80	6	98	66	0	1	32	0.99
67997--68748	113	6.7	112	94	1	1227	27	20	15	36	1.93
69184--69238	22	2.5	22	82	5	67	38	14	12	34	1.84
69606--69761	54	2.9	53	82	3	179	22	22	17	37	1.94
71897--72118	114	1.9	114	93	0	381	31	21	15	32	1.94
73747--73808	32	1.9	32	96	0	115	19	17	19	43	1.88
74416--74464	15	3.4	14	80	8	53	8	10	0	81	0.87
74422--74492	15	4.9	15	71	13	67	9	9	0	80	0.91
74455--74510	19	3.1	19	87	5	80	7	14	0	78	0.95
74413--74510	9	10.8	9	78	11	76	8	12	0	79	0.93
74499--74552	26	2.0	26	92	3	90	3	16	11	68	1.33
79188--79242	19	3.0	18	82	15	60	74	0	1	23	0.91
80060--80118	3	20.3	3	75	13	52	67	1	3	27	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80068--80129	29	2.2	28	81	16	76	62	3	4	29	1.31
80146--80207	29	2.2	29	80	13	67	61	1	6	30	1.31
80353--80391	2	19.5	2	100	0	78	48	0	0	51	1.00
81421--81512	3	31.0	3	78	6	98	66	0	1	32	0.99
81767--81893	46	2.7	46	87	3	184	22	20	11	46	1.81
81799--81884	26	3.5	26	74	18	103	19	23	11	45	1.83
81866--81995	45	2.9	45	94	0	215	29	26	11	33	1.91
88907--89030	45	2.8	45	90	1	205	30	22	7	39	1.81
91840--91934	16	5.6	16	67	24	52	37	1	2	58	1.17
92001--92079	3	25.7	3	74	21	58	34	1	1	63	1.11
96676--96713	19	2.0	19	94	0	67	39	5	0	55	1.23
97172--97214	2	22.0	2	95	4	79	48	0	0	51	1.00
97481--97555	3	25.3	3	91	2	98	37	0	1	61	1.05

Tables:   1

The End!