Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002560.1 Hibiscus syriacus cultivar Beakdansim tig00005194_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73359

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2221--2263
21
2.0
22
86
4
61
30
18
25
25
1.98
5695--5747
24
2.2
24
83
9
65
28
1
26
43
1.65
5864--6063
98
2.0
100
94
1
350
27
14
22
36
1.92
6086--6153
23
3.0
23
84
0
82
22
26
25
26
2.00
7095--7202
45
2.4
45
84
6
128
25
23
21
30
1.99
7140--7345
76
2.7
76
90
2
306
26
21
19
32
1.97
7293--7381
45
2.0
45
88
4
135
26
23
19
30
1.98
7527--7575
9
5.7
9
83
9
66
24
0
0
75
0.80
13866--13893
8
3.5
8
100
0
56
25
0
10
64
1.26
14044--14095
23
2.2
22
81
18
61
26
0
5
67
1.13
27182--27318
59
2.3
59
79
2
168
29
16
24
29
1.97
27419--27544
47
2.8
45
89
5
191
38
7
23
30
1.83
28550--28605
28
2.0
28
82
0
67
32
8
7
51
1.60
28671--28727
23
2.6
23
72
10
57
43
0
1
54
1.10
28821--28858
14
2.8
13
84
7
58
52
0
5
42
1.24
29650--29692
22
2.0
21
86
8
61
74
0
0
25
0.82
30155--30200
16
2.9
16
90
0
74
21
19
17
41
1.90
32052--32109
27
2.1
27
81
12
66
53
1
3
41
1.28
33203--33239
20
1.9
19
89
10
58
45
10
24
18
1.81
33393--33423
15
2.1
15
93
0
53
54
0
0
45
0.99
39920--39952
16
2.1
16
94
0
57
54
0
45
0
0.99
39992--40048
26
2.2
26
93
0
96
43
14
38
3
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41589--41621
2
16.5
2
100
0
66
51
0
0
48
1.00
44707--44736
2
15.0
2
100
0
60
50
0
0
50
1.00
45812--45950
70
2.0
69
97
1
260
32
15
17
35
1.91
47107--47141
13
2.8
13
91
4
54
34
25
0
40
1.56
52066--52195
50
2.6
50
78
0
116
20
27
25
26
1.99
52309--52348
10
4.0
10
84
12
55
32
27
0
40
1.57
52475--52907
111
4.0
110
92
3
697
36
7
10
45
1.67
54403--54437
18
1.9
18
94
0
61
28
22
20
28
1.98
54801--54835
18
1.9
18
88
0
52
28
14
40
17
1.88
59491--59554
23
2.7
22
74
11
56
53
1
0
45
1.10
59739--59783
22
2.0
22
82
8
54
48
4
0
46
1.22
59760--59842
35
2.3
35
83
6
96
39
2
2
55
1.26
59936--59989
22
2.5
20
80
16
63
46
0
1
51
1.11
61266--61313
22
2.4
19
86
13
69
62
16
6
14
1.51
61544--61583
21
1.9
21
85
10
55
32
7
2
57
1.40
63703--63788
43
2.0
43
93
0
145
36
4
4
54
1.42
66918--66960
19
2.3
19
79
0
50
60
11
2
25
1.43
68913--68969
23
2.5
23
88
0
78
45
5
12
36
1.64
69000--69047
23
2.1
23
88
0
69
39
10
12
37
1.77
69042--69970
201
4.6
198
81
8
1051
31
14
13
40
1.85
69042--69970
401
2.3
397
83
6
1164
31
14
13
40
1.85
70605--70724
40
3.0
40
100
0
240
42
20
10
27
1.83

Tables:   1

The End!