Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01002561.1 Hibiscus syriacus cultivar Beakdansim tig00005198_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 229426
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Found at i:5217 original size:15 final size:14
Alignment explanation
Indices: 5193--5223 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
5183 TTTTGATAAA
5193 TTTAAAAAAATATT
1 TTTAAAAAAATATT
5207 TTTATAAAAAATATT
1 TTTA-AAAAAATATT
5222 TT
1 TT
5224 CTTCCATCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.25
15 12 0.75
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (14 bp):
TTTAAAAAAATATT
Found at i:12069 original size:20 final size:20
Alignment explanation
Indices: 12044--12081 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
12034 CACATGTTAA
12044 AGAATGCATCGATGCACTAT
1 AGAATGCATCGATGCACTAT
*
12064 AGAATGTATCGATGCACT
1 AGAATGCATCGATGCACT
12082 TCAAGGGGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.26
Consensus pattern (20 bp):
AGAATGCATCGATGCACTAT
Found at i:13701 original size:23 final size:23
Alignment explanation
Indices: 13633--13693 Score: 86
Period size: 23 Copynumber: 2.7 Consensus size: 23
13623 ATATTTTATA
*
13633 TGGCACTTCGGTGCAATTCTATG
1 TGGCACTTCGGTGCAATTCTACG
* *
13656 CGGCACTTCGGTGCACTTCTACG
1 TGGCACTTCGGTGCAATTCTACG
*
13679 TGGCACTTTGGTGCA
1 TGGCACTTCGGTGCA
13694 TTTATACGAG
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.15, C:0.26, G:0.28, T:0.31
Consensus pattern (23 bp):
TGGCACTTCGGTGCAATTCTACG
Found at i:15057 original size:3 final size:3
Alignment explanation
Indices: 15051--15078 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
15041 ACATATTATT
15051 TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA T
15079 CAATGGTACA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:20933 original size:2 final size:2
Alignment explanation
Indices: 20926--20951 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
20916 AAAAGTAATT
20926 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
20952 ACCAATATTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:20982 original size:22 final size:23
Alignment explanation
Indices: 20957--20999 Score: 79
Period size: 22 Copynumber: 1.9 Consensus size: 23
20947 ATATAACCAA
20957 TATTAAATAATTTTAT-TAATTT
1 TATTAAATAATTTTATATAATTT
20979 TATTAAATAATTTTATATAAT
1 TATTAAATAATTTTATATAAT
21000 ATGTATGTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 16 0.80
23 4 0.20
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (23 bp):
TATTAAATAATTTTATATAATTT
Found at i:21135 original size:14 final size:14
Alignment explanation
Indices: 21106--21176 Score: 72
Period size: 14 Copynumber: 5.1 Consensus size: 14
21096 TAGTTTATAG
* *
21106 AAACCTTAAACCCT
1 AAACCATAAACACT
*
21120 AAATCATAAACACT
1 AAACCATAAACACT
**
21134 AAACCATAAACTTT
1 AAACCATAAACACT
**
21148 AAATTATAAACACT
1 AAACCATAAACACT
21162 AAACCATAAAC-CT
1 AAACCATAAACACT
21175 AA
1 AA
21177 TATAAATGGA
Statistics
Matches: 45, Mismatches: 12, Indels: 1
0.78 0.21 0.02
Matches are distributed among these distances:
13 4 0.09
14 41 0.91
ACGTcount: A:0.54, C:0.24, G:0.00, T:0.23
Consensus pattern (14 bp):
AAACCATAAACACT
Found at i:21138 original size:28 final size:28
Alignment explanation
Indices: 21106--21173 Score: 100
Period size: 28 Copynumber: 2.4 Consensus size: 28
21096 TAGTTTATAG
*
21106 AAACCTTAAACCCTAAATCATAAACACT
1 AAACCATAAACCCTAAATCATAAACACT
** *
21134 AAACCATAAACTTTAAATTATAAACACT
1 AAACCATAAACCCTAAATCATAAACACT
21162 AAACCATAAACC
1 AAACCATAAACC
21174 TAATATAAAT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.53, C:0.25, G:0.00, T:0.22
Consensus pattern (28 bp):
AAACCATAAACCCTAAATCATAAACACT
Found at i:21468 original size:2 final size:2
Alignment explanation
Indices: 21413--21459 Score: 78
Period size: 2 Copynumber: 24.0 Consensus size: 2
21403 ATAGGTAAGC
*
21413 TA TA TA TA TG TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
21454 TA TA TA
1 TA TA TA
21460 AACTATATAA
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
1 1 0.02
2 41 0.98
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (2 bp):
TA
Found at i:21571 original size:21 final size:21
Alignment explanation
Indices: 21546--21630 Score: 98
Period size: 21 Copynumber: 4.0 Consensus size: 21
21536 TTTATAGAAA
*
21546 CCTAAACCCTAAATCATAAAC
1 CCTAAACACTAAATCATAAAC
** *
21567 CCTAAACTTTAAATCATAAAT
1 CCTAAACACTAAATCATAAAC
* * *
21588 ACTAAAAACTAAAACATAAAC
1 CCTAAACACTAAATCATAAAC
*
21609 ACTAAACACTAAATCATAAAC
1 CCTAAACACTAAATCATAAAC
21630 C
1 C
21631 ATAATATAAA
Statistics
Matches: 52, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 52 1.00
ACGTcount: A:0.54, C:0.25, G:0.00, T:0.21
Consensus pattern (21 bp):
CCTAAACACTAAATCATAAAC
Found at i:21829 original size:23 final size:24
Alignment explanation
Indices: 21801--21846 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 24
21791 TTTTTCTTTG
21801 TATAAATAAAACTATA-TAATTTA
1 TATAAATAAAACTATATTAATTTA
*
21824 TATAAATTAAACTATATTAATTT
1 TATAAATAAAACTATATTAATTT
21847 TTCTTTGCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 15 0.71
24 6 0.29
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.43
Consensus pattern (24 bp):
TATAAATAAAACTATATTAATTTA
Found at i:21915 original size:13 final size:13
Alignment explanation
Indices: 21899--21926 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
21889 ATAGTTTTAT
21899 TAATTTTATATAA
1 TAATTTTATATAA
21912 TAATTTTATATAA
1 TAATTTTATATAA
21925 TA
1 TA
21927 GGTATATTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
TAATTTTATATAA
Found at i:22139 original size:16 final size:17
Alignment explanation
Indices: 22115--22147 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
22105 CGGATCATTT
22115 ACATATCAGGTT-AAAA
1 ACATATCAGGTTGAAAA
*
22131 ACATGTCAGGTTGAAAA
1 ACATATCAGGTTGAAAA
22148 TAGGTCGGGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.45, C:0.12, G:0.18, T:0.24
Consensus pattern (17 bp):
ACATATCAGGTTGAAAA
Found at i:24061 original size:6 final size:6
Alignment explanation
Indices: 24051--24081 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
24041 GTTATAAATG
*
24051 CACACG CACACC CACACC CACACC CACACC C
1 CACACC CACACC CACACC CACACC CACACC C
24082 CAACATCAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.32, C:0.65, G:0.03, T:0.00
Consensus pattern (6 bp):
CACACC
Found at i:26739 original size:2 final size:2
Alignment explanation
Indices: 26727--26790 Score: 103
Period size: 2 Copynumber: 32.5 Consensus size: 2
26717 TGAAATGAAC
* *
26727 AT AT AT TT AT AT AT AT AT GT -T AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
26768 AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT A
26791 CTGTATAAAT
Statistics
Matches: 58, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
1 1 0.02
2 57 0.98
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.52
Consensus pattern (2 bp):
AT
Found at i:28023 original size:17 final size:17
Alignment explanation
Indices: 28001--28034 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
27991 ATATATATTA
28001 ATTATTTTTATTCTAAT
1 ATTATTTTTATTCTAAT
*
28018 ATTATTTTTATTTTAAT
1 ATTATTTTTATTCTAAT
28035 GTTTTTTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (17 bp):
ATTATTTTTATTCTAAT
Found at i:28401 original size:19 final size:20
Alignment explanation
Indices: 28379--28429 Score: 52
Period size: 19 Copynumber: 2.5 Consensus size: 20
28369 TCATATTTTA
28379 TTTTTGTTTTGTTT-TGT-TT
1 TTTTTGTTTT-TTTATGTATT
*
28398 TTTTCGTTTTTTTATGTATT
1 TTTTTGTTTTTTTATGTATT
28418 TACTTTTGTTTT
1 T--TTTTGTTTT
28430 ATGTTTTCAT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
18 3 0.12
19 12 0.46
20 3 0.12
22 8 0.31
ACGTcount: A:0.06, C:0.04, G:0.12, T:0.78
Consensus pattern (20 bp):
TTTTTGTTTTTTTATGTATT
Found at i:28476 original size:16 final size:17
Alignment explanation
Indices: 28455--28486 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
28445 TCTATTCTTT
28455 TTTTTACTT-TGTTACG
1 TTTTTACTTATGTTACG
28471 TTTTTACTTATGTTAC
1 TTTTTACTTATGTTAC
28487 CCTTTTATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.16, C:0.12, G:0.09, T:0.62
Consensus pattern (17 bp):
TTTTTACTTATGTTACG
Found at i:38078 original size:21 final size:21
Alignment explanation
Indices: 38033--38109 Score: 97
Period size: 20 Copynumber: 3.8 Consensus size: 21
38023 CCATTAGACA
*
38033 GGGGGAATCAGTACCCCC-T-
1 GGGGGAATCTGTACCCCCTTG
*
38052 GGGGGAATCGGTACCCCCTTG
1 GGGGGAATCTGTACCCCCTTG
*
38073 GGGGGAATCTGTA-CCCCTGG
1 GGGGGAATCTGTACCCCCTTG
*
38093 GGGGGAATATGTACCCC
1 GGGGGAATCTGTACCCC
38110 TAGACAATCT
Statistics
Matches: 51, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
19 17 0.33
20 19 0.37
21 15 0.29
ACGTcount: A:0.18, C:0.27, G:0.36, T:0.18
Consensus pattern (21 bp):
GGGGGAATCTGTACCCCCTTG
Found at i:38096 original size:19 final size:20
Alignment explanation
Indices: 38033--38109 Score: 95
Period size: 19 Copynumber: 3.9 Consensus size: 20
38023 CCATTAGACA
*
38033 GGGGGAATCAGTACCCCCT-
1 GGGGGAATCTGTACCCCCTG
*
38052 GGGGGAATCGGTACCCCCTTG
1 GGGGGAATCTGTACCCCC-TG
38073 GGGGGAATCTGTA-CCCCTGG
1 GGGGGAATCTGTACCCCCT-G
*
38093 GGGGGAATATGTACCCC
1 GGGGGAATCTGTACCCC
38110 TAGACAATCT
Statistics
Matches: 51, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
19 18 0.35
20 18 0.35
21 15 0.29
ACGTcount: A:0.18, C:0.27, G:0.36, T:0.18
Consensus pattern (20 bp):
GGGGGAATCTGTACCCCCTG
Found at i:38110 original size:40 final size:40
Alignment explanation
Indices: 38033--38109 Score: 102
Period size: 41 Copynumber: 1.9 Consensus size: 40
38023 CCATTAGACA
*
38033 GGGGGAATCAGTACCCCCTGGGGGAATCGGTACCCCCTTG
1 GGGGGAATCAGTACCCCCTGGGGGAATAGGTACCCCCTTG
* *
38073 GGGGGAATCTGTA-CCCCTGGGGGGGAATATGTACCCC
1 GGGGGAATCAGTACCCCCT--GGGGGAATAGGTACCCC
38110 TAGACAATCT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
39 5 0.16
40 12 0.38
41 15 0.47
ACGTcount: A:0.18, C:0.27, G:0.36, T:0.18
Consensus pattern (40 bp):
GGGGGAATCAGTACCCCCTGGGGGAATAGGTACCCCCTTG
Found at i:38488 original size:24 final size:24
Alignment explanation
Indices: 38460--38522 Score: 126
Period size: 24 Copynumber: 2.6 Consensus size: 24
38450 CCCCCTTACT
38460 TTAACACTTCTCCCCTTTAACACC
1 TTAACACTTCTCCCCTTTAACACC
38484 TTAACACTTCTCCCCTTTAACACC
1 TTAACACTTCTCCCCTTTAACACC
38508 TTAACACTTCTCCCC
1 TTAACACTTCTCCCC
38523 CTTTTTGTTA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.24, C:0.43, G:0.00, T:0.33
Consensus pattern (24 bp):
TTAACACTTCTCCCCTTTAACACC
Found at i:48440 original size:40 final size:41
Alignment explanation
Indices: 48384--48462 Score: 133
Period size: 40 Copynumber: 2.0 Consensus size: 41
48374 ACCATTAGAC
* *
48384 AGGGGGAATCGGTACCCCCT-GGGGGGAATCTGTTCCCCCT
1 AGGGGGAATCGATACCCCCTGGGGGGGAATCTGTACCCCCT
48424 AGGGGGAATCGATACCCCCTGGGGGGGAATCTGTACCCC
1 AGGGGGAATCGATACCCCCTGGGGGGGAATCTGTACCCC
48463 TGGACAATCT
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
40 19 0.53
41 17 0.47
ACGTcount: A:0.18, C:0.29, G:0.35, T:0.18
Consensus pattern (41 bp):
AGGGGGAATCGATACCCCCTGGGGGGGAATCTGTACCCCCT
Found at i:48460 original size:21 final size:20
Alignment explanation
Indices: 48385--48462 Score: 104
Period size: 20 Copynumber: 3.9 Consensus size: 20
48375 CCATTAGACA
*
48385 GGGGGAATCGGTACCCCCTG
1 GGGGGAATCTGTACCCCCTG
* *
48405 GGGGGAATCTGTTCCCCCTA
1 GGGGGAATCTGTACCCCCTG
48425 GGGGGAATC-GATACCCCCTGG
1 GGGGGAATCTG-TACCCCCT-G
48446 GGGGGAATCTGTACCCC
1 GGGGGAATCTGTACCCC
48463 TGGACAATCT
Statistics
Matches: 50, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
19 1 0.02
20 33 0.66
21 15 0.30
22 1 0.02
ACGTcount: A:0.17, C:0.29, G:0.36, T:0.18
Consensus pattern (20 bp):
GGGGGAATCTGTACCCCCTG
Found at i:51610 original size:106 final size:105
Alignment explanation
Indices: 51351--51709 Score: 480
Period size: 106 Copynumber: 3.5 Consensus size: 105
51341 ACGAAGGGGC
* * * *
51351 TTCCCAATTTCATAACCAATTTCAACTTCACAGCGAATGATATTGGACCCAAGATAACACAATCT
1 TTCCCAATTTCAGAACCAATTTCAACTTCACAGCGAAGGATATTGGACCCAAGACAACACAAGCT
* * *
51416 CAAATTCACGACGAAGGGGCGGCTGATTGTCAACAAACAA
66 CAACTTCACGGCGAAGGGGCGGCTGACTGTCAACAAACAA
** * * *
51456 ----C--TTTCAGAGTCAGTTTCAACTTCACAACGAAGGATATTGGACTCAAGACAACACAAGCT
1 TTCCCAATTTCAGAACCAATTTCAACTTCACAGCGAAGGATATTGGACCCAAGACAACACAAGCT
51515 CAACTTCACGGCGAAGGGGCGGCTGACTGTCAACAAACAA
66 CAACTTCACGGCGAAGGGGCGGCTGACTGTCAACAAACAA
* * *
51555 TTCCCCAATTTCAGATCCAATTTCAACTTCACAGTGAAGGATATTGGACCCAAGACATCACAAGC
1 TT-CCCAATTTCAGAACCAATTTCAACTTCACAGCGAAGGATATTGGACCCAAGACAACACAAGC
51620 TCAACTTCACGGCGAAGGGGCGGCTGACTGTCAACAAACAA
65 TCAACTTCACGGCGAAGGGGCGGCTGACTGTCAACAAACAA
* * *
51661 TTTTCCAGTTCCAGAACCAATTTCAACTTCAC-GACGAAGGATATTGGAC
1 -TTCCCAATTTCAGAACCAATTTCAACTTCACAG-CGAAGGATATTGGAC
51710 TCGGAGCAAT
Statistics
Matches: 221, Mismatches: 24, Indels: 17
0.84 0.09 0.06
Matches are distributed among these distances:
99 86 0.39
101 1 0.00
104 1 0.00
105 1 0.00
106 130 0.59
107 2 0.01
ACGTcount: A:0.34, C:0.26, G:0.18, T:0.22
Consensus pattern (105 bp):
TTCCCAATTTCAGAACCAATTTCAACTTCACAGCGAAGGATATTGGACCCAAGACAACACAAGCT
CAACTTCACGGCGAAGGGGCGGCTGACTGTCAACAAACAA
Found at i:52484 original size:2 final size:2
Alignment explanation
Indices: 52472--52509 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
52462 TGAAATGAAC
*
52472 AT AT AT TT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
52510 TGTATAAATA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:53760 original size:16 final size:15
Alignment explanation
Indices: 53727--53762 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
53717 ATATTAATTA
53727 TTTTTATTCTAATAT
1 TTTTTATTCTAATAT
* *
53742 TTTTTATTTTAATGT
1 TTTTTATTCTAATAT
53757 TTTTTA
1 TTTTTA
53763 AAGTTATTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.22, C:0.03, G:0.03, T:0.72
Consensus pattern (15 bp):
TTTTTATTCTAATAT
Found at i:64188 original size:21 final size:21
Alignment explanation
Indices: 64155--64198 Score: 81
Period size: 20 Copynumber: 2.1 Consensus size: 21
64145 CTTAAAACCT
64155 AAAATGTTATTTTTTTATTAG
1 AAAATGTTATTTTTTTATTAG
64176 AAAA-GTTATTTTTTTATTAG
1 AAAATGTTATTTTTTTATTAG
64196 AAA
1 AAA
64199 TATTAATTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 19 0.83
21 4 0.17
ACGTcount: A:0.39, C:0.00, G:0.09, T:0.52
Consensus pattern (21 bp):
AAAATGTTATTTTTTTATTAG
Found at i:71551 original size:17 final size:17
Alignment explanation
Indices: 71529--71561 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
71519 TTGTTTAATA
71529 ATGAAAAGCATATAAAC
1 ATGAAAAGCATATAAAC
71546 ATGAAAAGCATATAAA
1 ATGAAAAGCATATAAA
71562 TGAAATTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.61, C:0.09, G:0.12, T:0.18
Consensus pattern (17 bp):
ATGAAAAGCATATAAAC
Found at i:71566 original size:15 final size:16
Alignment explanation
Indices: 71528--71566 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 16
71518 ATTGTTTAAT
71528 AATGAAAAGCATATAA
1 AATGAAAAGCATATAA
71544 ACATGAAAAGCATAT-A
1 A-ATGAAAAGCATATAA
71560 AATGAAA
1 AATGAAA
71567 TTTAAATCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.27
16 3 0.14
17 13 0.59
ACGTcount: A:0.62, C:0.08, G:0.13, T:0.18
Consensus pattern (16 bp):
AATGAAAAGCATATAA
Found at i:92918 original size:64 final size:64
Alignment explanation
Indices: 92847--93076 Score: 228
Period size: 64 Copynumber: 3.6 Consensus size: 64
92837 TTGGAACACT
* ***
92847 TGATGCATCGGTGCACCAAGTGTGCATCGATGCATGAAATGCATTCGATGTTTAAAAAATAGCC
1 TGATGCATCGATGCATGGAGTGTGCATCGATGCATGAAATGCATTCGATGTTTAAAAAATAGCC
** * ** **
92911 TGATGCATCGATGCATGGCTTGTGCATCGATGCATCAAATGCATTCGATGTTTTGAAAATATTC
1 TGATGCATCGATGCATGGAGTGTGCATCGATGCATGAAATGCATTCGATGTTTAAAAAATAGCC
* * * * * ** * *
92975 AGAGTGCATCGATGCATGGAGAGTGCATCGGTGCATGGAATGCATTCGATGTTCAATTAAT-TCA
1 TGA-TGCATCGATGCATGGAGTGTGCATCGATGCATGAAATGCATTCGATGTTTAAAAAATAGCC
* *
93039 TCGATGCATCGATGCATGGACTGATGCATCGGTGCATG
1 T-GATGCATCGATGCATGGAGTG-TGCATCGATGCATG
93077 CCTTTGAATA
Statistics
Matches: 135, Mismatches: 28, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
64 73 0.54
65 62 0.46
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (64 bp):
TGATGCATCGATGCATGGAGTGTGCATCGATGCATGAAATGCATTCGATGTTTAAAAAATAGCC
Found at i:92999 original size:19 final size:19
Alignment explanation
Indices: 92975--93025 Score: 70
Period size: 19 Copynumber: 2.7 Consensus size: 19
92965 GAAAATATTC
92975 AGAGTGCATCGATGCATGG
1 AGAGTGCATCGATGCATGG
*
92994 AGAGTGCATCGGTGCATGG
1 AGAGTGCATCGATGCATGG
93013 A-A-TGCATTCGATG
1 AGAGTGCA-TCGATG
93026 TTCAATTAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
17 4 0.14
18 6 0.21
19 19 0.66
ACGTcount: A:0.25, C:0.16, G:0.35, T:0.24
Consensus pattern (19 bp):
AGAGTGCATCGATGCATGG
Found at i:93010 original size:65 final size:64
Alignment explanation
Indices: 92868--93027 Score: 212
Period size: 65 Copynumber: 2.5 Consensus size: 64
92858 TGCACCAAGT
* ***
92868 GTGCATCGATGCATGAAATGCATTCGATGTTTAAAAAATAGCCTGATGCATCGATGCATGGCTT
1 GTGCATCGATGCATGAAATGCATTCGATGTTTAAAAAATAGCCAGATGCATCGATGCATGGAGA
* ** **
92932 GTGCATCGATGCATCAAATGCATTCGATGTTTTGAAAATATTCAGAGTGCATCGATGCATGGAGA
1 GTGCATCGATGCATGAAATGCATTCGATGTTTAAAAAATAGCCAGA-TGCATCGATGCATGGAGA
* *
92997 GTGCATCGGTGCATGGAATGCATTCGATGTT
1 GTGCATCGATGCATGAAATGCATTCGATGTT
93028 CAATTAATTC
Statistics
Matches: 83, Mismatches: 12, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
64 40 0.48
65 43 0.52
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (64 bp):
GTGCATCGATGCATGAAATGCATTCGATGTTTAAAAAATAGCCAGATGCATCGATGCATGGAGA
Found at i:93067 original size:65 final size:63
Alignment explanation
Indices: 92869--93076 Score: 210
Period size: 65 Copynumber: 3.2 Consensus size: 63
92859 GCACCAAGTG
* * *
92869 TGCATCGATGCATGAAATGCATTCGATGTTTAAAAAATAGCCTGATGCATCGATGCATGG-CTTG
1 TGCATCGATGCATGAAATGCATTCGATG-TTCAAAAAT-TCATGATGCATCGATGCATGGAC-TG
92933 -
63 A
* *
92933 TGCATCGATGCATCAAATGCATTCGATGTTTTGAAAATATTCA-GAGTGCATCGATGCATGGA--
1 TGCATCGATGCATGAAATGCATTCGATG--TTCAAAA-ATTCATGA-TGCATCGATGCATGGACT
92995 GA
62 GA
* * *
92997 GTGCATCGGTGCATGGAATGCATTCGATGTTCAATTAATTCATCGATGCATCGATGCATGGACTG
1 -TGCATCGATGCATGAAATGCATTCGATGTTCAA-AAATTCAT-GATGCATCGATGCATGGACTG
93062 A
63 A
*
93063 TGCATCGGTGCATG
1 TGCATCGATGCATG
93077 CCTTTGAATA
Statistics
Matches: 124, Mismatches: 9, Indels: 21
0.81 0.06 0.14
Matches are distributed among these distances:
63 10 0.08
64 46 0.37
65 64 0.52
66 4 0.03
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (63 bp):
TGCATCGATGCATGAAATGCATTCGATGTTCAAAAATTCATGATGCATCGATGCATGGACTGA
Found at i:99532 original size:22 final size:21
Alignment explanation
Indices: 99490--99529 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
99480 GAGTTTGTTT
*
99490 TCATTTTTCAATTTTGAAACA
1 TCATTTTTCAATTTTAAAACA
99511 TCATTTTT-ATATTTTAAAA
1 TCATTTTTCA-ATTTTAAAA
99530 ACAATTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.53
Consensus pattern (21 bp):
TCATTTTTCAATTTTAAAACA
Found at i:101524 original size:64 final size:63
Alignment explanation
Indices: 101456--101636 Score: 218
Period size: 64 Copynumber: 2.8 Consensus size: 63
101446 TTGAAACACT
* ***
101456 TGATGCATCGGTGCACCAAGTGTGCATCGATGCATGAAATGCATTCGATGTTTGAAAAATAGCC
1 TGATGCATCGATGCATGGAGTGTGCATCGATGCATGAAATGCATTCGATGTTTG-AAAATAGCC
** * **
101520 TGATGCATCGATGCATGGCTTGTGCATCGATGCATCAAATGCATTCGATGTTTTGAAAATATTC
1 TGATGCATCGATGCATGGAGTGTGCATCGATGCATGAAATGCATTCGATG-TTTGAAAATAGCC
* * * *
101584 AGAGTGCATCGATGCATGGAGAGTGCATCGGTGCATGGAATGCATTCGATGTT
1 TGA-TGCATCGATGCATGGAGTGTGCATCGATGCATGAAATGCATTCGATGTT
101637 CAATTAATTC
Statistics
Matches: 99, Mismatches: 16, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
64 54 0.55
65 45 0.45
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (63 bp):
TGATGCATCGATGCATGGAGTGTGCATCGATGCATGAAATGCATTCGATGTTTGAAAATAGCC
Found at i:101608 original size:19 final size:19
Alignment explanation
Indices: 101584--101634 Score: 70
Period size: 19 Copynumber: 2.7 Consensus size: 19
101574 GAAAATATTC
101584 AGAGTGCATCGATGCATGG
1 AGAGTGCATCGATGCATGG
*
101603 AGAGTGCATCGGTGCATGG
1 AGAGTGCATCGATGCATGG
101622 A-A-TGCATTCGATG
1 AGAGTGCA-TCGATG
101635 TTCAATTAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
17 4 0.14
18 6 0.21
19 19 0.66
ACGTcount: A:0.25, C:0.16, G:0.35, T:0.24
Consensus pattern (19 bp):
AGAGTGCATCGATGCATGG
Found at i:101676 original size:65 final size:64
Alignment explanation
Indices: 101478--101685 Score: 221
Period size: 65 Copynumber: 3.2 Consensus size: 64
101468 GCACCAAGTG
* *
101478 TGCATCGATGCATGAAATGCATTCGATGTTTGAAAAATAGCCTGATGCATCGATGCATGG-CTTG
1 TGCATCGATGCATGAAATGCATTCGATGTTTGAAAAAT-TCATGATGCATCGATGCATGGAC-TG
101542 -
64 A
*
101542 TGCATCGATGCATCAAATGCATTCGATGTTTTGAAAATATTCA-GAGTGCATCGATGCATGGA--
1 TGCATCGATGCATGAAATGCATTCGATG-TTTGAAAA-ATTCATGA-TGCATCGATGCATGGACT
101604 GA
63 GA
* * * *
101606 GTGCATCGGTGCATGGAATGCATTCGATG-TTCAATTAATTCATCGATGCATCGATGCATGGACT
1 -TGCATCGATGCATGAAATGCATTCGATGTTTGAA-AAATTCAT-GATGCATCGATGCATGGACT
101670 GA
63 GA
* *
101672 TGCATTGGTGCATG
1 TGCATCGATGCATG
101686 CCTTTGAATA
Statistics
Matches: 124, Mismatches: 9, Indels: 21
0.81 0.06 0.14
Matches are distributed among these distances:
63 10 0.08
64 46 0.37
65 64 0.52
66 4 0.03
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.30
Consensus pattern (64 bp):
TGCATCGATGCATGAAATGCATTCGATGTTTGAAAAATTCATGATGCATCGATGCATGGACTGA
Found at i:103253 original size:23 final size:23
Alignment explanation
Indices: 103188--103245 Score: 89
Period size: 23 Copynumber: 2.5 Consensus size: 23
103178 TTTTATATGG
103188 CACTTCGGTGCAATTCTACGCGA
1 CACTTCGGTGCAATTCTACGCGA
* *
103211 CACTTCGGTGCAACTCTACGTGA
1 CACTTCGGTGCAATTCTACGCGA
*
103234 CACTTTGGTGCA
1 CACTTCGGTGCA
103246 TTTATACGAG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.21, C:0.29, G:0.22, T:0.28
Consensus pattern (23 bp):
CACTTCGGTGCAATTCTACGCGA
Found at i:105533 original size:21 final size:21
Alignment explanation
Indices: 105484--105559 Score: 102
Period size: 21 Copynumber: 3.6 Consensus size: 21
105474 TGCGATTTTG
*
105484 GACTATCGCAA--CGAACTTG
1 GACTATCGCAACGCGAACTTC
*
105503 GAATAAATCGCAACGCGAACTTC
1 GACT--ATCGCAACGCGAACTTC
105526 GACTATCGCAACGCGAACTTC
1 GACTATCGCAACGCGAACTTC
105547 GACTATCGCAACG
1 GACTATCGCAACG
105560 AATTTGGAAA
Statistics
Matches: 50, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
19 3 0.06
21 37 0.74
23 10 0.20
ACGTcount: A:0.33, C:0.29, G:0.20, T:0.18
Consensus pattern (21 bp):
GACTATCGCAACGCGAACTTC
Found at i:105600 original size:21 final size:21
Alignment explanation
Indices: 105571--105623 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
105561 ATTTGGAAAA
105571 TCGCATTGCGATAGTCGAAGT
1 TCGCATTGCGATAGTCGAAGT
* *
105592 TCGCGTTGCGATAGTCGATGT
1 TCGCATTGCGATAGTCGAAGT
*
105613 TCACATTGCGA
1 TCGCATTGCGA
105624 ATCTGGAAAC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.30
Consensus pattern (21 bp):
TCGCATTGCGATAGTCGAAGT
Found at i:111301 original size:64 final size:64
Alignment explanation
Indices: 111233--111453 Score: 202
Period size: 64 Copynumber: 3.5 Consensus size: 64
111223 TTGAAGGTGT
* ** * *
111233 ATCGATGCACAGGAAGTGCATCGATGCA-CTCTTTTAA-AATAAATACATCGAATGCAATTCGTG
1 ATCGATGCAAAGGAAGTGCATCGATGCATC-CCATTAATAAGAAA-ACATCGAATGCAATTAGTG
111296 C
64 C
* *
111297 ATCGATGCATAA-GTAGTGCATCGATGCATCCCATTAATAAGGAAACATCGAATGCAATTAGTGC
1 ATCGATGCA-AAGGAAGTGCATCGATGCATCCCATTAATAAGAAAACATCGAATGCAATTAGTGC
* * * * * *
111361 ATCGATGCATAAGGCA-TGCATCGATGCATCCCAGTAATAATACAACATCGAATACATTTTA-TG
1 ATCGATGCA-AAGGAAGTGCATCGATGCATCCCATTAATAAGAAAACATCGAATGCA-ATTAGTG
111424 C
64 C
* * *
111425 ACCGATGCATCA-GTAGTGCATCGATGCAT
1 ATCGATGCA-AAGGAAGTGCATCGATGCAT
111454 ACCTTCATTA
Statistics
Matches: 134, Mismatches: 17, Indels: 12
0.82 0.10 0.07
Matches are distributed among these distances:
63 2 0.01
64 121 0.90
65 11 0.08
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (64 bp):
ATCGATGCAAAGGAAGTGCATCGATGCATCCCATTAATAAGAAAACATCGAATGCAATTAGTGC
Found at i:112349 original size:23 final size:23
Alignment explanation
Indices: 112319--112405 Score: 138
Period size: 23 Copynumber: 3.8 Consensus size: 23
112309 CATTATTATA
112319 TGGCACTACGGTGCAATTCTACG
1 TGGCACTACGGTGCAATTCTACG
112342 TGGCACTACGGTGCAATTCTACG
1 TGGCACTACGGTGCAATTCTACG
* * *
112365 CGGCACTCCGGTACAATTCTACG
1 TGGCACTACGGTGCAATTCTACG
*
112388 TGGCACTTCGGTGCAATT
1 TGGCACTACGGTGCAATT
112406 ATATGAGCTG
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 58 1.00
ACGTcount: A:0.21, C:0.28, G:0.25, T:0.26
Consensus pattern (23 bp):
TGGCACTACGGTGCAATTCTACG
Found at i:115121 original size:20 final size:20
Alignment explanation
Indices: 115098--115139 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
115088 AATCCACCAC
*
115098 ATGCAACTATATGCTCCTAA
1 ATGCAACTAAATGCTCCTAA
* *
115118 ATGCATCTAAATGGTCCTAA
1 ATGCAACTAAATGCTCCTAA
115138 AT
1 AT
115140 AGGCTCTTAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.36, C:0.21, G:0.12, T:0.31
Consensus pattern (20 bp):
ATGCAACTAAATGCTCCTAA
Found at i:116998 original size:13 final size:13
Alignment explanation
Indices: 116982--117021 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
116972 AGGAAACTAG
116982 AAAGTGAAAGTAA
1 AAAGTGAAAGTAA
* *
116995 AAAGAGAAAGTGA
1 AAAGTGAAAGTAA
117008 AAAGTGAAAAGTAA
1 AAAGTG-AAAGTAA
117022 GTGGGGTAGG
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
13 16 0.73
14 6 0.27
ACGTcount: A:0.62, C:0.00, G:0.25, T:0.12
Consensus pattern (13 bp):
AAAGTGAAAGTAA
Found at i:124591 original size:20 final size:20
Alignment explanation
Indices: 124568--124610 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
124558 AATCCACCAC
*
124568 ATGCAACTATATGCTCCTAA
1 ATGCAACTAAATGCTCCTAA
** *
124588 ATGCGTCTAAATGGTCCTAA
1 ATGCAACTAAATGCTCCTAA
124608 ATG
1 ATG
124611 GGCTCTTAGA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30
Consensus pattern (20 bp):
ATGCAACTAAATGCTCCTAA
Found at i:135026 original size:18 final size:17
Alignment explanation
Indices: 135005--135043 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
134995 TAATAGTGAG
135005 TTATTATAAAATATATTT
1 TTATTAT-AAATATATTT
* *
135023 TTATTATGATTATATTT
1 TTATTATAAATATATTT
135040 TTAT
1 TTAT
135044 ACTTTTATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 12 0.63
18 7 0.37
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.62
Consensus pattern (17 bp):
TTATTATAAATATATTT
Found at i:135621 original size:2 final size:2
Alignment explanation
Indices: 135614--135653 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
135604 TATGAATGAA
135614 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
135654 TTTTTAAATT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:138918 original size:21 final size:21
Alignment explanation
Indices: 138894--138938 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
138884 TGCCTTTGTC
* *
138894 GGAGTAATGTTTATAATTATT
1 GGAGTAATGTTTAGAATAATT
*
138915 GGAGTAATTTTTAGAATAATT
1 GGAGTAATGTTTAGAATAATT
138936 GGA
1 GGA
138939 TCCTTTTTCT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.36, C:0.00, G:0.22, T:0.42
Consensus pattern (21 bp):
GGAGTAATGTTTAGAATAATT
Found at i:147045 original size:13 final size:13
Alignment explanation
Indices: 147027--147061 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
147017 TTTTAGTCTG
147027 ACCGATTTTGGTC
1 ACCGATTTTGGTC
147040 ACCGATTTTGGTC
1 ACCGATTTTGGTC
*
147053 ACCAATTTT
1 ACCGATTTT
147062 AAAATTAAGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.20, C:0.23, G:0.17, T:0.40
Consensus pattern (13 bp):
ACCGATTTTGGTC
Found at i:147127 original size:31 final size:31
Alignment explanation
Indices: 147084--147144 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 31
147074 ACGTGGTTCT
*
147084 TAACATTATCGATCAGTTCGATTTTAGTCCA
1 TAACATTATCGATCAGTTCGATTTAAGTCCA
* * *
147115 TAACGTTATCGATCTGTTTGATTTAAGTCC
1 TAACATTATCGATCAGTTCGATTTAAGTCC
147145 CTCAGCCGTT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.26, C:0.18, G:0.15, T:0.41
Consensus pattern (31 bp):
TAACATTATCGATCAGTTCGATTTAAGTCCA
Found at i:149331 original size:2 final size:2
Alignment explanation
Indices: 149326--149353 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
149316 CAAAAAAGCA
149326 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
149354 GTGTACCATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:152213 original size:15 final size:15
Alignment explanation
Indices: 152167--152213 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
152157 ATTATTCTTT
* *
152167 TTATAATTTAATCCC
1 TTATAATTTAGTCTC
*
152182 TTATCATTTATGTCTC
1 TTATAATTTA-GTCTC
152198 TTATAATTTAGTCTC
1 TTATAATTTAGTCTC
152213 T
1 T
152214 CAGTCTATTG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
15 15 0.56
16 12 0.44
ACGTcount: A:0.26, C:0.17, G:0.04, T:0.53
Consensus pattern (15 bp):
TTATAATTTAGTCTC
Found at i:155729 original size:13 final size:13
Alignment explanation
Indices: 155711--155737 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
155701 CATAGTTGAA
155711 CAGTCTTCATATG
1 CAGTCTTCATATG
155724 CAGTCTTCATATG
1 CAGTCTTCATATG
155737 C
1 C
155738 GTTTCTGTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.26, G:0.15, T:0.37
Consensus pattern (13 bp):
CAGTCTTCATATG
Found at i:156442 original size:14 final size:15
Alignment explanation
Indices: 156423--156451 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
156413 CTTATACTTT
156423 TTAAAA-ATTTAATA
1 TTAAAACATTTAATA
156437 TTAAAACATTTAATA
1 TTAAAACATTTAATA
156452 ATAATGTAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.41
Consensus pattern (15 bp):
TTAAAACATTTAATA
Found at i:173271 original size:39 final size:38
Alignment explanation
Indices: 173228--173393 Score: 134
Period size: 37 Copynumber: 4.4 Consensus size: 38
173218 TTGCAAATTG
173228 TTTTTGAAAATACATATATAATATATATAG-TTTAAAACA
1 TTTTTGAAAAT--ATATATAATATATATAGTTTTAAAACA
* *
173267 TTTTTGAAAATATGTAT-AT-TATATAGTTTTTAAAATA
1 TTTTTGAAAATATATATAATATATATAG-TTTTAAAACA
*
173304 TTTTTGAAAAT-TATATAATATATACT--TTTGAAAAC-
1 TTTTTGAAAATATATATAATATATA-TAGTTTTAAAACA
* * * *
173339 GTTATGAAAACATTTATATAATATATA-ATTTTTAAAAACCA
1 TTTTTG-AAA-ATATATATAATATATATAGTTTT-AAAA-CA
173380 -TTTTGAAAATATAT
1 TTTTTGAAAATATAT
173394 TTTTTGAAAA
Statistics
Matches: 104, Mismatches: 10, Indels: 27
0.74 0.07 0.19
Matches are distributed among these distances:
35 11 0.11
36 16 0.15
37 28 0.27
38 25 0.24
39 19 0.18
40 5 0.05
ACGTcount: A:0.45, C:0.04, G:0.06, T:0.45
Consensus pattern (38 bp):
TTTTTGAAAATATATATAATATATATAGTTTTAAAACA
Found at i:173299 original size:37 final size:38
Alignment explanation
Indices: 173228--173393 Score: 148
Period size: 36 Copynumber: 4.4 Consensus size: 38
173218 TTGCAAATTG
173228 TTTTTGAAAATACATATATAATATATATAG--TTTAAAACA
1 TTTTTGAAAAT--ATATAT-ATATATATAGTTTTTAAAACA
* *
173267 TTTTTGAAAATATGTATAT-TATATAGTTTTTAAAATA
1 TTTTTGAAAATATATATATATATATAGTTTTTAAAACA
* *
173304 TTTTTGAAAAT-TATATA-ATATATACTTTTGAAAAC-
1 TTTTTGAAAATATATATATATATATAGTTTTTAAAACA
* * * * *
173339 GTTATGAAAACATTTATATAATATATAATTTTTAAAAACCA
1 TTTTTGAAAATATATATAT-ATATATAGTTTTT-AAAA-CA
173380 -TTTTGAAAATATAT
1 TTTTTGAAAATATAT
173394 TTTTTGAAAA
Statistics
Matches: 103, Mismatches: 15, Indels: 17
0.76 0.11 0.13
Matches are distributed among these distances:
35 15 0.15
36 26 0.25
37 24 0.23
38 11 0.11
39 15 0.15
40 12 0.12
ACGTcount: A:0.45, C:0.04, G:0.06, T:0.45
Consensus pattern (38 bp):
TTTTTGAAAATATATATATATATATAGTTTTTAAAACA
Found at i:173375 original size:27 final size:27
Alignment explanation
Indices: 173345--173444 Score: 73
Period size: 26 Copynumber: 3.7 Consensus size: 27
173335 AAACGTTATG
173345 AAAACATTTATATAATATATAATTTTTA
1 AAAACATTT-TATAATATATAATTTTTA
*
173373 AAAACCATTTTGA-AA-ATAT-ATTTTTT
1 AAAA-CATTTT-ATAATATATAATTTTTA
* * * * *
173399 GAAA-ATTATATAATATGTAGTTTTTG
1 AAAACATTTTATAATATATAATTTTTA
* *
173425 AAAACGTTTTAAAATATATA
1 AAAACATTTTATAATATATA
173445 TAATATATAC
Statistics
Matches: 55, Mismatches: 11, Indels: 13
0.70 0.14 0.16
Matches are distributed among these distances:
23 1 0.02
24 6 0.11
25 3 0.05
26 17 0.31
27 15 0.27
28 7 0.13
29 6 0.11
ACGTcount: A:0.46, C:0.04, G:0.06, T:0.44
Consensus pattern (27 bp):
AAAACATTTTATAATATATAATTTTTA
Found at i:173400 original size:15 final size:16
Alignment explanation
Indices: 173380--173409 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
173370 TTAAAAACCA
173380 TTTTGAAAA-TATATT
1 TTTTGAAAATTATATT
173395 TTTTGAAAATTATAT
1 TTTTGAAAATTATAT
173410 AATATGTAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (16 bp):
TTTTGAAAATTATATT
Found at i:173423 original size:126 final size:128
Alignment explanation
Indices: 173267--173520 Score: 399
Period size: 126 Copynumber: 2.0 Consensus size: 128
173257 GTTTAAAACA
* * *
173267 TTTTTGAAAATATGTATATTATATAGTTTTT-AAAATATTTTTGAAAAT-TATATAATATATACT
1 TTTTTGAAAATATATATAATATATAGTTTTTGAAAA-AGTTTT-AAAATATATATAATATATACT
*
173330 TTTGAAAACGTTATGAAAACATTTATATAATATATAATTTTT-AAAAACCATTTTGAAAATATAT
64 TTTGAAAACGTTATGAAAACATTTATAGAATATATAATTTTTAAAAAACCATTTTGAAAATATAT
* *
173394 TTTTTGAAAAT-TATATAATATGTAGTTTTTGAAAACGTTTTAAAATATATATAATATATACTTT
1 TTTTTGAAAATATATATAATATATAGTTTTTGAAAAAGTTTTAAAATATATATAATATATACTTT
*
173458 TGAAAGCGTTATGAAAACATTTATAGAATATATAATTTTTAAAAAACCATTTTGAAAATATAT
66 TGAAAACGTTATGAAAACATTTATAGAATATATAATTTTTAAAAAACCATTTTGAAAATATAT
173521 ATAATATATA
Statistics
Matches: 117, Mismatches: 7, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
125 5 0.04
126 75 0.64
127 37 0.32
ACGTcount: A:0.44, C:0.04, G:0.07, T:0.44
Consensus pattern (128 bp):
TTTTTGAAAATATATATAATATATAGTTTTTGAAAAAGTTTTAAAATATATATAATATATACTTT
TGAAAACGTTATGAAAACATTTATAGAATATATAATTTTTAAAAAACCATTTTGAAAATATAT
Found at i:173449 original size:36 final size:37
Alignment explanation
Indices: 173395--173587 Score: 151
Period size: 36 Copynumber: 5.1 Consensus size: 37
173385 AAAATATATT
*
173395 TTTTGAAAAT-TATATAATATGTAGTTTTTGAAAACG
1 TTTTGAAAATATATATAATATATAGTTTTTGAAAACG
* *
173431 TTTT-AAAATATATATAATATATA-CTTTTGAAAGCG
1 TTTTGAAAATATATATAATATATAGTTTTTGAAAACG
* * * * * *
173466 TTATGAAAACATTTATAGAATATATAATTTTTAAAAAACCA
1 TTTTG-AAA-ATATATATAATATATAGTTTTT-GAAAA-CG
* *
173507 TTTTGAAAATATATATAATATATAGTTTTTTTTTAAAAAACA
1 TTTTGAAAATATATATAATATATAG----TTTTT-GAAAACG
* * *
173549 TTTTAAAAATTTATATATTATAT-GTTTTTGAAAACG
1 TTTTGAAAATATATATAATATATAGTTTTTGAAAACG
173585 TTT
1 TTT
173588 ATATATATAT
Statistics
Matches: 127, Mismatches: 19, Indels: 22
0.76 0.11 0.13
Matches are distributed among these distances:
35 18 0.14
36 24 0.19
37 8 0.06
38 14 0.11
39 18 0.14
40 6 0.05
41 6 0.05
42 22 0.17
43 11 0.09
ACGTcount: A:0.43, C:0.04, G:0.08, T:0.45
Consensus pattern (37 bp):
TTTTGAAAATATATATAATATATAGTTTTTGAAAACG
Found at i:173552 original size:42 final size:42
Alignment explanation
Indices: 173493--173577 Score: 127
Period size: 42 Copynumber: 2.0 Consensus size: 42
173483 GAATATATAA
*
173493 TTTTTAAAAAACCATTTTGAAAATATATATAATATATAGTTTT
1 TTTTTAAAAAACCATTTTAAAAATATATATAATATAT-GTTTT
* *
173536 TTTTTAAAAAA-CATTTTAAAAATTTATATATTATATGTTTT
1 TTTTTAAAAAACCATTTTAAAAATATATATAATATATGTTTT
173577 T
1 T
173578 GAAAACGTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
41 6 0.15
42 22 0.56
43 11 0.28
ACGTcount: A:0.42, C:0.04, G:0.04, T:0.51
Consensus pattern (42 bp):
TTTTTAAAAAACCATTTTAAAAATATATATAATATATGTTTT
Found at i:173646 original size:16 final size:17
Alignment explanation
Indices: 173597--173646 Score: 50
Period size: 16 Copynumber: 3.1 Consensus size: 17
173587 TATATATATA
*
173597 TATATTATT-ATTTATT
1 TATATTTTTAATTTATT
* *
173613 TTTATTTTTAATTAATT
1 TATATTTTTAATTTATT
*
173630 TAT-TTTTTCATTTATT
1 TATATTTTTAATTTATT
173646 T
1 T
173647 TTGTGCAGGG
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
16 19 0.70
17 8 0.30
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (17 bp):
TATATTTTTAATTTATT
Found at i:175008 original size:13 final size:13
Alignment explanation
Indices: 175008--175038 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
174998 TTATTATTTT
175008 TTATTTTTTATTA
1 TTATTTTTTATTA
175021 TTATTTTTTATTA
1 TTATTTTTTATTA
175034 TTATT
1 TTATT
175039 GTTATTTTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (13 bp):
TTATTTTTTATTA
Found at i:175013 original size:20 final size:20
Alignment explanation
Indices: 174990--175046 Score: 89
Period size: 20 Copynumber: 2.9 Consensus size: 20
174980 AACACATTTC
174990 ATTTTTTATTATTATTTTTT
1 ATTTTTTATTATTATTTTTT
175010 ATTTTTTATTATTATTTTTT
1 ATTTTTTATTATTATTTTTT
* *
175030 A-TTATTATTGTTATTTT
1 ATTTTTTATTATTATTTT
175047 CTCCTTTTGA
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
19 14 0.40
20 21 0.60
ACGTcount: A:0.21, C:0.00, G:0.02, T:0.77
Consensus pattern (20 bp):
ATTTTTTATTATTATTTTTT
Found at i:176850 original size:19 final size:19
Alignment explanation
Indices: 176816--176860 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
176806 ATTTAGACAT
176816 TTTGCA-TTTCTTATTTTC
1 TTTGCATTTTCTTATTTTC
*
176834 TTTGCATTTTGTTATTTTC
1 TTTGCATTTTCTTATTTTC
176853 TTTGCATT
1 TTTGCATT
176861 CACATTAACT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
18 6 0.24
19 19 0.76
ACGTcount: A:0.11, C:0.13, G:0.09, T:0.67
Consensus pattern (19 bp):
TTTGCATTTTCTTATTTTC
Found at i:180661 original size:165 final size:165
Alignment explanation
Indices: 180247--180840 Score: 976
Period size: 165 Copynumber: 3.6 Consensus size: 165
180237 ACCTGCCACC
*
180247 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGAATAGCTTAAGTCGAG
1 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGTCGAG
*** * * * * *
180312 AAGGGCTATCTGCCAAAGACCCTTAAGTTTGATTACACTCAGCTTCAAGGACATAACATTTACAG
66 AAGGGCTATCTGCCAAAGACCCCCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTACAG
* *
180377 CATAACTCAAGGCTAGAAGGGTTATCTGTTAGC-A
131 CATAACTCAAGGCTAGAAGGGTTATCTGTGACCAA
* *
180411 AAGACCTTTGAGTTCGACTACGCTCAGCTCCTAGGCACATCATTTGCAGCATAGCTTAAGTCGAG
1 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGTCGAG
*
180476 AAGGGCTATCTGCCAAAGACCCCCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTACAA
66 AAGGGCTATCTGCCAAAGACCCCCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTACAG
180541 CATAACTCAAGGCTAGAAGGGTTATCTGTGACCAA
131 CATAACTCAAGGCTAGAAGGGTTATCTGTGACCAA
*
180576 AAGACCGTT-GAGTTCGACTACGCTCAGCTCCTAGGCACATCATTTGCAGCATAGCTTAAGTCGA
1 AAGACC-TTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGTCGA
*
180640 GAAGGGCTATCTGCCAAAGACCCCCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTATA
65 GAAGGGCTATCTGCCAAAGACCCCCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTACA
180705 GCATAACTCAAGGCTAGAAGGGTTATCTGTGACCAA
130 GCATAACTCAAGGCTAGAAGGGTTATCTGTGACCAA
*
180741 AAGACCTTCGAGTTCGACTCCGCTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGTCGAG
1 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGTCGAG
* * * *
180806 AAGGGATATCTGCTAAAGACCTCCGAGGTCGATTA
66 AAGGGCTATCTGCCAAAGACCCCCGAGTTCGATTA
180841 TATTCAACTT
Statistics
Matches: 405, Mismatches: 22, Indels: 5
0.94 0.05 0.01
Matches are distributed among these distances:
164 151 0.37
165 252 0.62
166 2 0.00
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.24
Consensus pattern (165 bp):
AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGTCGAG
AAGGGCTATCTGCCAAAGACCCCCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTACAG
CATAACTCAAGGCTAGAAGGGTTATCTGTGACCAA
Found at i:180920 original size:329 final size:327
Alignment explanation
Indices: 180219--180921 Score: 946
Period size: 329 Copynumber: 2.1 Consensus size: 327
180209 TGCAGCTTAG
* * * * * *
180219 CTCAAGGCCAGAAGGGCTACCTG-CCACCAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGC
1 CTCAAGGCAAGAAGGGCTATCTGTACA-AAAAACCGTCGAGTTCGACTACGCTCAGCTCCAAGGC
** *
180283 ACATCATTTGCAGAATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTTAAGTTTGATTAC
65 ACATCATTTGCAGAATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCCCAAGTTCGATTAC
* * *
180348 ACTCAGCTTCAAGGACATAACATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTTAGCAAA
130 ACTCAGCTTCAAGGACACAACATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTGACCAAA
* *
180413 GACCTTTGAGTTCGACTACGCTCAGCTCCTAGGCACATCATTTGCAGCATAGCTTAAGTCGAGAA
195 GACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGTCGAGAA
* * * * * *
180478 GGGCTATCTGCCAAAGACCCCCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTACAACA
260 GGGATATCTGCCAAAGACCCCCGAGGTCGATTACACTCAACTTAGAGGGCAAATCACTTACAACA
180543 TAA
325 TAA
* * * * *
180546 CTCAAGGCTAGAAGGGTTATCTGTGACCAAAAGACCGTTGAGTTCGACTACGCTCAGCTCCTAGG
1 CTCAAGGCAAGAAGGGCTATCTGT-A-CAAAAAACCGTCGAGTTCGACTACGCTCAGCTCCAAGG
* *
180611 CACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCCCGAGTTCGATTA
64 CACATCATTTGCAGAATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCCCAAGTTCGATTA
* * * *
180676 CACTCAGCTTCGAGGGCACATCATTTATAGCATAACTCAAGGCTAGAAGGGTTATCTGTGACCAA
129 CACTCAGCTTCAAGGACACAACATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTGACC-A
*
180741 AAGACCTTCGAGTTCGACTCCGCTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGTCGAG
193 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGTCGAG
* * * *
180806 AAGGGATATCTGCTAAAGACCTCCGAGGTCGATTATATTCAACTTAGA-GGCAAATCAAGCTTAC
258 AAGGGATATCTGCCAAAGACCCCCGAGGTCGATTACACTCAACTTAGAGGGCAAATC-A-CTTAC
*
180870 ATA-ATAG
321 A-ACATAA
* * *
180877 CTCAATGCAATAAGGGCTATCTGT-CAATAAAACTGTCGAGTTCGA
1 CTCAAGGCAAGAAGGGCTATCTGTACAA-AAAACCGTCGAGTTCGA
180922 TTCTAATCAG
Statistics
Matches: 327, Mismatches: 41, Indels: 14
0.86 0.11 0.04
Matches are distributed among these distances:
327 20 0.06
328 3 0.01
329 169 0.52
330 106 0.32
331 28 0.09
332 1 0.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.24
Consensus pattern (327 bp):
CTCAAGGCAAGAAGGGCTATCTGTACAAAAAACCGTCGAGTTCGACTACGCTCAGCTCCAAGGCA
CATCATTTGCAGAATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCCCAAGTTCGATTACA
CTCAGCTTCAAGGACACAACATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTGACCAAAG
ACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGTCGAGAAG
GGATATCTGCCAAAGACCCCCGAGGTCGATTACACTCAACTTAGAGGGCAAATCACTTACAACAT
AA
Found at i:181497 original size:37 final size:36
Alignment explanation
Indices: 181456--181619 Score: 147
Period size: 37 Copynumber: 4.4 Consensus size: 36
181446 TTGCAAATTG
181456 TTTTTGAAAATACATATATAATATATAG-TTTAAAACA
1 TTTTTGAAAAT--ATATATAATATATAGTTTTAAAACA
* * *
181493 TTTTTGAAAATATGTATATTATATAGTTTTTAAAATA
1 TTTTTGAAAATATATATAATATATAG-TTTTAAAACA
*
181530 TTTTTGAAAAT-TATATAATATATACTTTTGAAAAC-
1 TTTTTGAAAATATATATAATATATAGTTTT-AAAACA
* * * *
181565 GTTATGAAAACATTTATATAATATATAATTTTTAAAAACCA
1 TTTTTG-AAA-ATATATATAATATAT-AGTTTT-AAAA-CA
181606 -TTTTGAAAATATAT
1 TTTTTGAAAATATAT
181620 TTTTTGAAAA
Statistics
Matches: 105, Mismatches: 13, Indels: 17
0.78 0.10 0.13
Matches are distributed among these distances:
35 21 0.20
36 18 0.17
37 32 0.30
38 17 0.16
39 12 0.11
40 5 0.05
ACGTcount: A:0.45, C:0.04, G:0.06, T:0.45
Consensus pattern (36 bp):
TTTTTGAAAATATATATAATATATAGTTTTAAAACA
Found at i:181601 original size:27 final size:27
Alignment explanation
Indices: 181571--181670 Score: 73
Period size: 26 Copynumber: 3.7 Consensus size: 27
181561 AAACGTTATG
181571 AAAACATTTATATAATATATAATTTTTA
1 AAAACATTT-TATAATATATAATTTTTA
*
181599 AAAACCATTTTGA-AA-ATAT-ATTTTTT
1 AAAA-CATTTT-ATAATATATAATTTTTA
* * * * *
181625 GAAA-ATTATATAATATGTAGTTTTTG
1 AAAACATTTTATAATATATAATTTTTA
* *
181651 AAAACGTTTTAAAATATATA
1 AAAACATTTTATAATATATA
181671 TAATATATAC
Statistics
Matches: 55, Mismatches: 11, Indels: 13
0.70 0.14 0.16
Matches are distributed among these distances:
23 1 0.02
24 6 0.11
25 3 0.05
26 17 0.31
27 15 0.27
28 7 0.13
29 6 0.11
ACGTcount: A:0.46, C:0.04, G:0.06, T:0.44
Consensus pattern (27 bp):
AAAACATTTTATAATATATAATTTTTA
Found at i:181619 original size:36 final size:34
Alignment explanation
Indices: 181469--181619 Score: 110
Period size: 35 Copynumber: 4.2 Consensus size: 34
181459 TTGAAAATAC
*
181469 ATATATAATATATA-GTTT-AAAACATTTTTGAAA
1 ATATATAATATATATTTTTAAAAACA-TTTTGAAA
* *
181502 ATATGTATATTATATAGTTTTTAAAATA-TTTTTGAAA
1 ATA--TATAATATATA-TTTTTAAAA-ACATTTTGAAA
* * * *
181539 ATTATATAATATATACTTTTGAAAACGTTATGAAAA
1 A-TATATAATATATATTTTTAAAAACATTTTG-AAA
181575 CATTTATATAATATATAATTTTTAAAAACCATTTTGAAA
1 -A--TATATAATATAT-ATTTTTAAAAA-CATTTTGAAA
181614 ATATAT
1 ATATAT
181620 TTTTTGAAAA
Statistics
Matches: 93, Mismatches: 12, Indels: 23
0.73 0.09 0.18
Matches are distributed among these distances:
33 3 0.03
34 1 0.01
35 21 0.23
36 18 0.19
37 13 0.14
38 19 0.20
39 13 0.14
40 5 0.05
ACGTcount: A:0.46, C:0.04, G:0.06, T:0.44
Consensus pattern (34 bp):
ATATATAATATATATTTTTAAAAACATTTTGAAA
Found at i:181626 original size:15 final size:16
Alignment explanation
Indices: 181606--181635 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
181596 TTAAAAACCA
181606 TTTTGAAAA-TATATT
1 TTTTGAAAATTATATT
181621 TTTTGAAAATTATAT
1 TTTTGAAAATTATAT
181636 AATATGTAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (16 bp):
TTTTGAAAATTATATT
Found at i:181647 original size:126 final size:128
Alignment explanation
Indices: 181493--181746 Score: 399
Period size: 126 Copynumber: 2.0 Consensus size: 128
181483 GTTTAAAACA
* * *
181493 TTTTTGAAAATATGTATATTATATAGTTTTT-AAAATATTTTTGAAAAT-TATATAATATATACT
1 TTTTTGAAAATATATATAATATATAGTTTTTGAAAA-AGTTTT-AAAATATATATAATATATACT
*
181556 TTTGAAAACGTTATGAAAACATTTATATAATATATAATTTTT-AAAAACCATTTTGAAAATATAT
64 TTTGAAAACGTTATGAAAACATTTATAGAATATATAATTTTTAAAAAACCATTTTGAAAATATAT
* *
181620 TTTTTGAAAAT-TATATAATATGTAGTTTTTGAAAACGTTTTAAAATATATATAATATATACTTT
1 TTTTTGAAAATATATATAATATATAGTTTTTGAAAAAGTTTTAAAATATATATAATATATACTTT
*
181684 TGAAAGCGTTATGAAAACATTTATAGAATATATAATTTTTAAAAAACCATTTTGAAAATATAT
66 TGAAAACGTTATGAAAACATTTATAGAATATATAATTTTTAAAAAACCATTTTGAAAATATAT
181747 ATAATATATA
Statistics
Matches: 117, Mismatches: 7, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
125 5 0.04
126 75 0.64
127 37 0.32
ACGTcount: A:0.44, C:0.04, G:0.07, T:0.44
Consensus pattern (128 bp):
TTTTTGAAAATATATATAATATATAGTTTTTGAAAAAGTTTTAAAATATATATAATATATACTTT
TGAAAACGTTATGAAAACATTTATAGAATATATAATTTTTAAAAAACCATTTTGAAAATATAT
Found at i:181675 original size:36 final size:37
Alignment explanation
Indices: 181621--181813 Score: 151
Period size: 42 Copynumber: 5.1 Consensus size: 37
181611 AAAATATATT
*
181621 TTTTGAAAAT-TATATAATATGTAGTTTTTGAAAACG
1 TTTTGAAAATATATATAATATATAGTTTTTGAAAACG
* *
181657 TTTT-AAAATATATATAATATATA-CTTTTGAAAGCG
1 TTTTGAAAATATATATAATATATAGTTTTTGAAAACG
* * * * * *
181692 TTATGAAAACATTTATAGAATATATAATTTTTAAAAAACCA
1 TTTTG-AAA-ATATATATAATATATAGTTTTT-GAAAA-CG
* *
181733 TTTTGAAAATATATATAATATATAGTTTTTTTTAAAAAAACA
1 TTTTGAAAATATATATAATATATAG---TTTTT--GAAAACG
* * *
181775 TTTTAAAAATTTATATATTATAT-GTTTTTGAAAACG
1 TTTTGAAAATATATATAATATATAGTTTTTGAAAACG
181811 TTT
1 TTT
181814 ATATATATAT
Statistics
Matches: 127, Mismatches: 19, Indels: 22
0.76 0.11 0.13
Matches are distributed among these distances:
35 18 0.14
36 24 0.19
37 3 0.02
38 19 0.15
39 18 0.14
40 6 0.05
41 6 0.05
42 27 0.21
43 6 0.05
ACGTcount: A:0.44, C:0.04, G:0.08, T:0.45
Consensus pattern (37 bp):
TTTTGAAAATATATATAATATATAGTTTTTGAAAACG
Found at i:183231 original size:13 final size:13
Alignment explanation
Indices: 183231--183261 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
183221 TTATTATTTT
183231 TTATTTTTTATTA
1 TTATTTTTTATTA
183244 TTATTTTTTATTA
1 TTATTTTTTATTA
183257 TTATT
1 TTATT
183262 GTTATTTTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (13 bp):
TTATTTTTTATTA
Found at i:183236 original size:20 final size:20
Alignment explanation
Indices: 183213--183269 Score: 89
Period size: 20 Copynumber: 2.9 Consensus size: 20
183203 AACACATTTC
183213 ATTTTTTATTATTATTTTTT
1 ATTTTTTATTATTATTTTTT
183233 ATTTTTTATTATTATTTTTT
1 ATTTTTTATTATTATTTTTT
* *
183253 A-TTATTATTGTTATTTT
1 ATTTTTTATTATTATTTT
183270 CTCCTTTTGA
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
19 14 0.40
20 21 0.60
ACGTcount: A:0.21, C:0.00, G:0.02, T:0.77
Consensus pattern (20 bp):
ATTTTTTATTATTATTTTTT
Found at i:183290 original size:21 final size:21
Alignment explanation
Indices: 183260--183303 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
183250 TTTATTATTA
183260 TTGTTA-TTTTCTCCTTTTGAT
1 TTGTTATTTTTC-CCTTTTGAT
* *
183281 TTGTTTTTTTTCCCTTTTTAT
1 TTGTTATTTTTCCCTTTTGAT
183302 TT
1 TT
183304 CTGATTTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 15 0.75
22 5 0.25
ACGTcount: A:0.07, C:0.14, G:0.07, T:0.73
Consensus pattern (21 bp):
TTGTTATTTTTCCCTTTTGAT
Found at i:188419 original size:10 final size:10
Alignment explanation
Indices: 188404--188436 Score: 66
Period size: 10 Copynumber: 3.3 Consensus size: 10
188394 ATAAAAGGAT
188404 AAATATTTAC
1 AAATATTTAC
188414 AAATATTTAC
1 AAATATTTAC
188424 AAATATTTAC
1 AAATATTTAC
188434 AAA
1 AAA
188437 AGAGGAGATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.55, C:0.09, G:0.00, T:0.36
Consensus pattern (10 bp):
AAATATTTAC
Found at i:196637 original size:21 final size:21
Alignment explanation
Indices: 196611--196655 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
196601 GATTTCTGGG
*
196611 CAAGGGGAATCGATACCCATT
1 CAAGGGGAACCGATACCCATT
*
196632 CAAGGGGAACCGATACCCCTT
1 CAAGGGGAACCGATACCCATT
196653 CAA
1 CAA
196656 ACGAACAAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.33, C:0.29, G:0.22, T:0.16
Consensus pattern (21 bp):
CAAGGGGAACCGATACCCATT
Found at i:197921 original size:13 final size:13
Alignment explanation
Indices: 197903--197943 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 13
197893 TCTACGGGCA
197903 CTACGGTGCAATT
1 CTACGGTGCAATT
197916 CTACGG-GC-A--
1 CTACGGTGCAATT
197925 CTACGGTGCAATT
1 CTACGGTGCAATT
197938 CTACGG
1 CTACGG
197944 GCACTTCGTG
Statistics
Matches: 24, Mismatches: 0, Indels: 8
0.75 0.00 0.25
Matches are distributed among these distances:
9 6 0.25
10 2 0.08
11 2 0.08
12 2 0.08
13 12 0.50
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.24
Consensus pattern (13 bp):
CTACGGTGCAATT
Found at i:197965 original size:43 final size:44
Alignment explanation
Indices: 197890--197977 Score: 151
Period size: 43 Copynumber: 2.0 Consensus size: 44
197880 TTATGGACAT
197890 AATTCTACGGGCACTACGGTGCAATTCTACGGGCACTACGGTGC
1 AATTCTACGGGCACTACGGTGCAATTCTACGGGCACTACGGTGC
* *
197934 AATTCTACGGGCACTTC-GTGCAATTCTACGGGCACTTCGGTGC
1 AATTCTACGGGCACTACGGTGCAATTCTACGGGCACTACGGTGC
197977 A
1 A
197978 TTTATACGAG
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
43 26 0.62
44 16 0.38
ACGTcount: A:0.22, C:0.27, G:0.26, T:0.25
Consensus pattern (44 bp):
AATTCTACGGGCACTACGGTGCAATTCTACGGGCACTACGGTGC
Found at i:197985 original size:22 final size:22
Alignment explanation
Indices: 197890--197977 Score: 151
Period size: 22 Copynumber: 4.0 Consensus size: 22
197880 TTATGGACAT
197890 AATTCTACGGGCACTACGGTGC
1 AATTCTACGGGCACTACGGTGC
197912 AATTCTACGGGCACTACGGTGC
1 AATTCTACGGGCACTACGGTGC
*
197934 AATTCTACGGGCACTTC-GTGC
1 AATTCTACGGGCACTACGGTGC
*
197955 AATTCTACGGGCACTTCGGTGC
1 AATTCTACGGGCACTACGGTGC
197977 A
1 A
197978 TTTATACGAG
Statistics
Matches: 64, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
21 21 0.33
22 43 0.67
ACGTcount: A:0.22, C:0.27, G:0.26, T:0.25
Consensus pattern (22 bp):
AATTCTACGGGCACTACGGTGC
Found at i:201235 original size:21 final size:21
Alignment explanation
Indices: 201209--201253 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
201199 GATTTCTGGG
* *
201209 CAAGGGGAATCGGTACCCATT
1 CAAGGGGAACCGATACCCATT
*
201230 CAAGGGGAACCGATACCCCTT
1 CAAGGGGAACCGATACCCATT
201251 CAA
1 CAA
201254 ACGAACAAGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.31, C:0.29, G:0.24, T:0.16
Consensus pattern (21 bp):
CAAGGGGAACCGATACCCATT
Found at i:202522 original size:13 final size:13
Alignment explanation
Indices: 202504--202566 Score: 61
Period size: 13 Copynumber: 5.5 Consensus size: 13
202494 TCTACGGGCA
202504 CTACGGTGCAATT
1 CTACGGTGCAATT
202517 CTACGG-GC-A--
1 CTACGGTGCAATT
202526 CTACGGTGCAATT
1 CTACGGTGCAATT
202539 CTACGG-GC-A--
1 CTACGGTGCAATT
*
202548 CTTCGGTGCAATT
1 CTACGGTGCAATT
202561 CTACGG
1 CTACGG
202567 GCACTTCGGT
Statistics
Matches: 40, Mismatches: 2, Indels: 16
0.69 0.03 0.28
Matches are distributed among these distances:
9 11 0.28
10 4 0.10
11 4 0.10
12 4 0.10
13 17 0.43
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.25
Consensus pattern (13 bp):
CTACGGTGCAATT
Found at i:202587 original size:22 final size:22
Alignment explanation
Indices: 202491--202579 Score: 160
Period size: 22 Copynumber: 4.0 Consensus size: 22
202481 TTATGGACAT
202491 AATTCTACGGGCACTACGGTGC
1 AATTCTACGGGCACTACGGTGC
202513 AATTCTACGGGCACTACGGTGC
1 AATTCTACGGGCACTACGGTGC
*
202535 AATTCTACGGGCACTTCGGTGC
1 AATTCTACGGGCACTACGGTGC
*
202557 AATTCTACGGGCACTTCGGTGC
1 AATTCTACGGGCACTACGGTGC
202579 A
1 A
202580 TTTATACGAG
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
22 66 1.00
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.25
Consensus pattern (22 bp):
AATTCTACGGGCACTACGGTGC
Found at i:205338 original size:23 final size:23
Alignment explanation
Indices: 205300--205363 Score: 74
Period size: 23 Copynumber: 2.7 Consensus size: 23
205290 CATTTTAATA
*
205300 AAAATAATAATTATTAATGTATTT
1 AAAAT-ATAATTATTAATATATTT
* *
205324 AAAATATATTTATTAATATTTTT
1 AAAATATAATTATTAATATATTT
205347 AACAATATAATATATTA
1 AA-AATATAAT-TATTA
205364 TAATAATATA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
23 17 0.50
24 12 0.35
25 5 0.15
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.47
Consensus pattern (23 bp):
AAAATATAATTATTAATATATTT
Found at i:205430 original size:50 final size:49
Alignment explanation
Indices: 205292--205487 Score: 161
Period size: 50 Copynumber: 3.9 Consensus size: 49
205282 TTTAGTATCA
* *
205292 TTTTAATAAAAATAAT-AATTATTAATGTATTTAA-AATA-TATTTATTAATAT
1 TTTTAA-AAATATAATAAATTATTAA--TA-ATAATAATATTATTTATTAAT-T
* * * *
205343 TTTTAACAATATAATATATTA-TAATAATATATGATATTATTATATT-CTT
1 TTTTAAAAATATAATAAATTATTAATAATA-ATAATATTATT-TATTAATT
* *
205392 ATTTTAATAATATAATAAATTATTAATAA-AAGTTATATTATTTATTAATT
1 -TTTTAAAAATATAATAAATTATTAATAATAA-TAATATTATTTATTAATT
* *
205442 TCTTAAAAATATTATTAAATTATTAATAATAAATAATATTATTTAT
1 TTTTAAAAATA-TAATAAATTATTAATAAT-AATAATATTATTTAT
205488 GTATTTAATA
Statistics
Matches: 119, Mismatches: 14, Indels: 24
0.76 0.09 0.15
Matches are distributed among these distances:
47 2 0.02
48 3 0.03
49 18 0.15
50 62 0.52
51 32 0.27
52 2 0.02
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (49 bp):
TTTTAAAAATATAATAAATTATTAATAATAATAATATTATTTATTAATT
Found at i:205467 original size:20 final size:20
Alignment explanation
Indices: 205433--205472 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
205423 GTTATATTAT
* *
205433 TTATTAATTTCTTAAAAATA
1 TTATTAAATTATTAAAAATA
*
205453 TTATTAAATTATTAATAATA
1 TTATTAAATTATTAAAAATA
205473 AATAATATTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (20 bp):
TTATTAAATTATTAAAAATA
Found at i:205492 original size:27 final size:28
Alignment explanation
Indices: 205445--205508 Score: 71
Period size: 27 Copynumber: 2.3 Consensus size: 28
205435 ATTAATTTCT
205445 TAAA-AATATTATTAAATTA-TTAATAA
1 TAAATAATATTATTAAATTATTTAATAA
* *
205471 TAAATAATATTATT-TATGTATTTAATAT
1 TAAATAATATTATTAAAT-TATTTAATAA
205499 TAATATAATA
1 TAA-ATAATA
205509 GTCTAATAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
26 6 0.19
27 11 0.34
28 9 0.28
29 6 0.19
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.47
Consensus pattern (28 bp):
TAAATAATATTATTAAATTATTTAATAA
Found at i:205504 original size:51 final size:50
Alignment explanation
Indices: 205396--205508 Score: 124
Period size: 51 Copynumber: 2.3 Consensus size: 50
205386 ATTCTTATTT
* * **
205396 TAATAATA-TAATAAATTATTAATAAAAGTTATATTATTTATTAATTTCT
1 TAATAATATTAATAAATTATTAATAAAAATAATATTATTTATTAATTTAA
* *
205445 TAAAAATATTATTAAATTATTAATAATAAATAATATTATTTATGT-ATTTAA
1 TAATAATATTAATAAATTATTAATAA-AAATAATATTATTTAT-TAATTTAA
*
205496 TATTAATA-TAATA
1 TAATAATATTAATA
205509 GTCTAATAAT
Statistics
Matches: 52, Mismatches: 9, Indels: 5
0.79 0.14 0.08
Matches are distributed among these distances:
49 7 0.13
50 20 0.38
51 24 0.46
52 1 0.02
ACGTcount: A:0.50, C:0.01, G:0.02, T:0.48
Consensus pattern (50 bp):
TAATAATATTAATAAATTATTAATAAAAATAATATTATTTATTAATTTAA
Found at i:205623 original size:14 final size:14
Alignment explanation
Indices: 205604--205646 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
205594 CTTTAATATA
205604 ATTTATAATATTTT
1 ATTTATAATATTTT
*
205618 ATTTATAAAATTTT
1 ATTTATAATATTTT
***
205632 AGAAATAATATTTT
1 ATTTATAATATTTT
205646 A
1 A
205647 ATAAATTATT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53
Consensus pattern (14 bp):
ATTTATAATATTTT
Found at i:205688 original size:22 final size:24
Alignment explanation
Indices: 205658--205705 Score: 73
Period size: 22 Copynumber: 2.1 Consensus size: 24
205648 TAAATTATTC
205658 TAAGATTTTTAAAATAAA-AATAT
1 TAAGATTTTTAAAATAAATAATAT
*
205681 TAAG-TTTTTATAATAAATAATAT
1 TAAGATTTTTAAAATAAATAATAT
205704 TA
1 TA
205706 TTTATTATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 12 0.52
23 11 0.48
ACGTcount: A:0.52, C:0.00, G:0.04, T:0.44
Consensus pattern (24 bp):
TAAGATTTTTAAAATAAATAATAT
Found at i:205713 original size:22 final size:21
Alignment explanation
Indices: 205662--205714 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 21
205652 TTATTCTAAG
*
205662 ATTTTTAAAATAAAAATATTA
1 ATTTTTATAATAAAAATATTA
205683 AGTTTTTATAATAAATAATATT-
1 A-TTTTTATAATAAA-AATATTA
205705 ATTTATTATA
1 ATTT-TTATA
205715 TTTCATATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
21 4 0.14
22 18 0.64
23 6 0.21
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (21 bp):
ATTTTTATAATAAAAATATTA
Found at i:208552 original size:19 final size:19
Alignment explanation
Indices: 208530--208567 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
208520 CATCTGCACA
208530 ATAATTGAATTCATGCATC
1 ATAATTGAATTCATGCATC
208549 ATAATTGAATTCATGCATC
1 ATAATTGAATTCATGCATC
208568 GTCTAATTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.16, G:0.11, T:0.37
Consensus pattern (19 bp):
ATAATTGAATTCATGCATC
Found at i:215982 original size:25 final size:23
Alignment explanation
Indices: 215927--215994 Score: 77
Period size: 23 Copynumber: 3.0 Consensus size: 23
215917 TTTCAATAAG
*
215927 TCTGCTTATATGACATATTTTTT
1 TCTGCTTTTATGACATATTTTTT
* *
215950 TATGCTTTTATGACATGTTTTTTT
1 TCTGCTTTTATGACAT-ATTTTTT
215974 TCTG-TCTTT-TGACATATTTTT
1 TCTGCT-TTTATGACATATTTTT
215995 CGGTTGTTTG
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
22 5 0.13
23 21 0.55
24 12 0.32
ACGTcount: A:0.18, C:0.12, G:0.10, T:0.60
Consensus pattern (23 bp):
TCTGCTTTTATGACATATTTTTT
Found at i:225484 original size:15 final size:15
Alignment explanation
Indices: 225464--225494 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
225454 GTTACTTTGT
225464 CTACAAAGGTTATCC
1 CTACAAAGGTTATCC
*
225479 CTACAAGGGTTATCC
1 CTACAAAGGTTATCC
225494 C
1 C
225495 CGTGACTCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (15 bp):
CTACAAAGGTTATCC
Done.