Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002563.1 Hibiscus syriacus cultivar Beakdansim tig00005202_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52439

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9513--9561
22
2.2
22
100
0
98
44
8
18
28
1.78
11329--11373
3
15.3
3
82
13
58
66
0
0
33
0.92
12275--12320
23
2.2
20
88
11
65
13
17
15
54
1.71
12279--12377
37
2.8
36
75
14
98
13
13
16
57
1.65
12365--12412
14
3.4
14
85
0
69
8
16
18
56
1.65
12354--12412
28
2.1
28
80
0
64
10
16
18
54
1.70
12972--13014
14
3.0
14
79
3
50
46
4
0
48
1.22
14394--14426
2
16.5
2
93
0
57
48
3
0
48
1.17
16624--16700
39
2.0
38
94
2
136
25
15
10
48
1.77
17138--17179
20
2.0
21
86
4
59
33
2
2
61
1.21
17769--17840
34
2.2
33
85
9
94
48
1
1
48
1.18
17985--18011
2
13.5
2
100
0
54
48
0
0
51
1.00
26052--26229
41
4.4
41
91
2
270
41
16
2
40
1.61
26061--26229
81
2.1
83
94
2
297
40
15
2
40
1.61
34390--34424
15
2.2
16
90
5
54
71
0
8
20
1.11
34475--34563
21
4.1
22
72
8
67
60
2
4
32
1.29
35668--35760
39
2.4
39
89
1
134
26
8
22
41
1.82
35746--35862
36
3.2
36
79
13
132
42
15
16
25
1.87
35780--35970
102
1.9
103
83
7
255
41
12
18
27
1.86
35877--35979
36
2.8
36
81
8
136
39
11
19
29
1.87
36044--36116
37
2.0
37
94
0
128
41
13
19
26
1.88
36046--36130
37
2.3
37
84
6
111
44
12
17
24
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36039--36406
93
3.9
93
78
8
363
39
12
18
30
1.87
36063--36334
87
3.1
87
84
4
321
38
12
18
31
1.87
36665--36869
106
1.9
106
89
5
317
21
17
24
36
1.95
37447--37560
32
3.5
32
84
2
138
35
19
13
31
1.90
41930--41995
3
21.7
3
83
11
64
68
1
4
25
1.18
41934--41960
14
1.9
14
100
0
54
66
0
0
33
0.92

Tables:   1

The End!