Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01002564.1 Hibiscus syriacus cultivar Beakdansim tig00005203_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 75994
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32
Found at i:8285 original size:20 final size:20
Alignment explanation
Indices: 8256--8297 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
8246 ATTCCACCAC
8256 ATGCAACTATATGCTCCTAA
1 ATGCAACTATATGCTCCTAA
* * *
8276 ATGCATCTATGTGGTCCTAA
1 ATGCAACTATATGCTCCTAA
8296 AT
1 AT
8298 AAGCTCTTAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.31, C:0.21, G:0.14, T:0.33
Consensus pattern (20 bp):
ATGCAACTATATGCTCCTAA
Found at i:11243 original size:107 final size:107
Alignment explanation
Indices: 11107--11329 Score: 403
Period size: 107 Copynumber: 2.1 Consensus size: 107
11097 CGTCTTCATA
11107 AGATTAATTTTTTGAATTAAAGTTTCTTTATTCTTCTGTGATGCGTAACATGGAAGAGCCGGTAG
1 AGATTAA--TTTTGAATTAAAGTTTCTTTATTCTTCTGTGATGCGTAACATGGAAGAGCCGGTAG
*
11172 ATTTTGTTTCCAAAATTAGGCCAACCAGGCTTCAATAATTAATT
64 ATTTTGTTTCCAAAACTAGGCCAACCAGGCTTCAATAATTAATT
11216 AGATTAATTTTGAATTAAAGTTTCTTTATTCTTCTGTGATGCGTAACATGGAAGAGCCGGTAGAT
1 AGATTAATTTTGAATTAAAGTTTCTTTATTCTTCTGTGATGCGTAACATGGAAGAGCCGGTAGAT
*
11281 TTTGTTTCCAAAACTAGGCCAACCGGGCTTCAATAATTAATT
66 TTTGTTTCCAAAACTAGGCCAACCAGGCTTCAATAATTAATT
11323 A-ATTAAT
1 AGATTAAT
11330 GGTATCGCTT
Statistics
Matches: 112, Mismatches: 2, Indels: 3
0.96 0.02 0.03
Matches are distributed among these distances:
106 6 0.05
107 99 0.88
109 7 0.06
ACGTcount: A:0.31, C:0.14, G:0.17, T:0.38
Consensus pattern (107 bp):
AGATTAATTTTGAATTAAAGTTTCTTTATTCTTCTGTGATGCGTAACATGGAAGAGCCGGTAGAT
TTTGTTTCCAAAACTAGGCCAACCAGGCTTCAATAATTAATT
Found at i:12142 original size:20 final size:20
Alignment explanation
Indices: 12085--12142 Score: 57
Period size: 20 Copynumber: 2.9 Consensus size: 20
12075 CTCTAGAGTT
12085 CTCTAGAATATTT-TAGAAAA
1 CTCTAGAAT-TTTCTAGAAAA
* * *
12105 TTCTA-AACTTATCCAGAAAA
1 CTCTAGAA-TTTTCTAGAAAA
12125 CTCTAGAATTTTCTAGAA
1 CTCTAGAATTTTCTAGAA
12143 TCTCTCCAAT
Statistics
Matches: 29, Mismatches: 6, Indels: 6
0.71 0.15 0.15
Matches are distributed among these distances:
19 4 0.14
20 23 0.79
21 2 0.07
ACGTcount: A:0.41, C:0.16, G:0.09, T:0.34
Consensus pattern (20 bp):
CTCTAGAATTTTCTAGAAAA
Found at i:12640 original size:19 final size:19
Alignment explanation
Indices: 12616--12652 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
12606 TATTGGAATA
*
12616 TGCATTCTAGAATATGCAG
1 TGCATTCTAGAACATGCAG
12635 TGCATTCTAGAACATGCA
1 TGCATTCTAGAACATGCA
12653 CTGCTAATGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30
Consensus pattern (19 bp):
TGCATTCTAGAACATGCAG
Found at i:13884 original size:36 final size:36
Alignment explanation
Indices: 13695--13878 Score: 296
Period size: 36 Copynumber: 5.1 Consensus size: 36
13685 GGTGCACAGA
* *
13695 CGATTCAAATCGAACGGAATGAAGCATCGGCACTTT
1 CGATTCAAATCGAACGGAAGGAAGCATCGGCACTTC
*
13731 CGATTCAAATCGAATGGAAGGAAGCATCGGCACTTC
1 CGATTCAAATCGAACGGAAGGAAGCATCGGCACTTC
*
13767 CGATTCAAATCGAACGGAAGGAAGCATCGGCAATTC
1 CGATTCAAATCGAACGGAAGGAAGCATCGGCACTTC
* *
13803 TGATTCAAGTCGAACGGAAGGAAGCATCGGCACTTC
1 CGATTCAAATCGAACGGAAGGAAGCATCGGCACTTC
* *
13839 CGATTCAAGTCGAACGGAAGGAAGAATCGGCACTTC
1 CGATTCAAATCGAACGGAAGGAAGCATCGGCACTTC
13875 CGAT
1 CGAT
13879 CCAAGTGTTC
Statistics
Matches: 138, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
36 138 1.00
ACGTcount: A:0.33, C:0.22, G:0.26, T:0.19
Consensus pattern (36 bp):
CGATTCAAATCGAACGGAAGGAAGCATCGGCACTTC
Found at i:13963 original size:19 final size:19
Alignment explanation
Indices: 13939--13975 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
13929 TATTGGAATA
*
13939 TGCATTCTAGAATATGCAG
1 TGCATTCTAGAACATGCAG
13958 TGCATTCTAGAACATGCA
1 TGCATTCTAGAACATGCA
13976 CTGCTAATGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30
Consensus pattern (19 bp):
TGCATTCTAGAACATGCAG
Found at i:16180 original size:17 final size:17
Alignment explanation
Indices: 16133--16180 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
16123 CACTAGTTGA
**
16133 TTAAATATTTAATAAAT
1 TTAAATATTTTTTAAAT
*
16150 TT-TATATTTTTTTAAAT
1 TTAAATA-TTTTTTAAAT
16167 TTAAATATTTTTTA
1 TTAAATATTTTTTA
16181 CAGGAACCAA
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
16 3 0.12
17 19 0.76
18 3 0.12
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
TTAAATATTTTTTAAAT
Found at i:17816 original size:2 final size:2
Alignment explanation
Indices: 17809--17853 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
17799 GTCCACGTAT
17809 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
17851 TA T
1 TA T
17854 TCTAGCTTTT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:22527 original size:17 final size:17
Alignment explanation
Indices: 22505--22548 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
22495 AATTCGTATC
22505 ATTTTTATATAATTAAT
1 ATTTTTATATAATTAAT
* * *
22522 ATTTTTAAATTATTATT
1 ATTTTTATATAATTAAT
22539 ATATTTTATA
1 AT-TTTTATA
22549 ATATAATTGT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 16 0.73
18 6 0.27
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (17 bp):
ATTTTTATATAATTAAT
Found at i:22729 original size:25 final size:25
Alignment explanation
Indices: 22676--22729 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
22666 ATTACCGTAT
*
22676 TTATATTTTATTGAAAACTAAATAT
1 TTATATTTTATTGAAAACTAAATAA
*
22701 TTATATTTTATTGGAAAC-AATATAA
1 TTATATTTTATTGAAAACTAA-ATAA
22726 TTAT
1 TTAT
22730 TATGATTTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
24 2 0.08
25 24 0.92
ACGTcount: A:0.43, C:0.04, G:0.06, T:0.48
Consensus pattern (25 bp):
TTATATTTTATTGAAAACTAAATAA
Found at i:24928 original size:16 final size:17
Alignment explanation
Indices: 24907--24941 Score: 63
Period size: 16 Copynumber: 2.1 Consensus size: 17
24897 TTACTATTCA
24907 CGTGAATAGTG-AATTT
1 CGTGAATAGTGAAATTT
24923 CGTGAATAGTGAAATTT
1 CGTGAATAGTGAAATTT
24940 CG
1 CG
24942 GTCGGCGATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 11 0.61
17 7 0.39
ACGTcount: A:0.31, C:0.09, G:0.26, T:0.34
Consensus pattern (17 bp):
CGTGAATAGTGAAATTT
Found at i:25709 original size:15 final size:16
Alignment explanation
Indices: 25691--25723 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
25681 GTGGCAGATC
25691 AAAATCCAG-ACGGGA
1 AAAATCCAGAACGGGA
*
25706 AAAATCTAGAACGGGA
1 AAAATCCAGAACGGGA
25722 AA
1 AA
25724 GAAAGATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.52, C:0.15, G:0.24, T:0.09
Consensus pattern (16 bp):
AAAATCCAGAACGGGA
Found at i:30033 original size:20 final size:21
Alignment explanation
Indices: 29989--30044 Score: 60
Period size: 20 Copynumber: 2.7 Consensus size: 21
29979 CAGTTTCCAA
* *
29989 ATTCGCAACGCGAATATCCAG
1 ATTCGCAACGCGATTATCAAG
*
30010 ATTCGCAACGCGATTGT-AAG
1 ATTCGCAACGCGATTATCAAG
* *
30030 ATTCACAAAGCGATT
1 ATTCGCAACGCGATT
30045 TTGAAAAATG
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
20 15 0.50
21 15 0.50
ACGTcount: A:0.34, C:0.23, G:0.20, T:0.23
Consensus pattern (21 bp):
ATTCGCAACGCGATTATCAAG
Found at i:30121 original size:44 final size:41
Alignment explanation
Indices: 30044--30125 Score: 110
Period size: 44 Copynumber: 1.9 Consensus size: 41
30034 ACAAAGCGAT
* *
30044 TTTGAAAAATGTGTTGCGATAGTTAAAATGTGTTGCGAGAG
1 TTTGAAAAATGTGTTGCGATAGTGAAAAAGTGTTGCGAGAG
*
30085 TTTGAAAAACGTGTTGTTGTGATAGTGAAAAAGTGTTGCGA
1 TTTGAAAAA--TG-TGTTGCGATAGTGAAAAAGTGTTGCGA
30126 TAGTGAAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
41 9 0.26
43 2 0.06
44 24 0.69
ACGTcount: A:0.32, C:0.05, G:0.29, T:0.34
Consensus pattern (41 bp):
TTTGAAAAATGTGTTGCGATAGTGAAAAAGTGTTGCGAGAG
Found at i:30135 original size:19 final size:20
Alignment explanation
Indices: 30046--30136 Score: 96
Period size: 19 Copynumber: 4.4 Consensus size: 20
30036 AAAGCGATTT
30046 TGAAAAATGTGTTGCGATAG
1 TGAAAAATGTGTTGCGATAG
* *
30066 T-TAAAATGTGTTGCGAGAG
1 TGAAAAATGTGTTGCGATAG
*
30085 TTTGAAAAACGTGTTGTTGTGATAG
1 --TGAAAAA--TG-TGTTGCGATAG
30110 TGAAAAA-GTGTTGCGATAG
1 TGAAAAATGTGTTGCGATAG
30129 TGAAAAAT
1 TGAAAAAT
30137 CCAAAATAAG
Statistics
Matches: 58, Mismatches: 6, Indels: 14
0.74 0.08 0.18
Matches are distributed among these distances:
19 33 0.57
20 2 0.03
21 1 0.02
22 4 0.07
23 7 0.12
24 2 0.03
25 9 0.16
ACGTcount: A:0.35, C:0.04, G:0.29, T:0.32
Consensus pattern (20 bp):
TGAAAAATGTGTTGCGATAG
Found at i:30436 original size:6 final size:6
Alignment explanation
Indices: 30426--30467 Score: 75
Period size: 6 Copynumber: 7.0 Consensus size: 6
30416 TCCCGTCTCG
*
30426 GGTCGG GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT
1 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT
30468 TGTCTGGGGT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.00, C:0.17, G:0.52, T:0.31
Consensus pattern (6 bp):
GGTCGT
Found at i:37008 original size:21 final size:21
Alignment explanation
Indices: 36982--37022 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
36972 CTAATATTGT
36982 AATGTCAAAATTAGGTGCAAC
1 AATGTCAAAATTAGGTGCAAC
37003 AATGTCAAAATTAGGTGCAA
1 AATGTCAAAATTAGGTGCAA
37023 TAATATTTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.44, C:0.12, G:0.20, T:0.24
Consensus pattern (21 bp):
AATGTCAAAATTAGGTGCAAC
Found at i:41653 original size:21 final size:21
Alignment explanation
Indices: 41627--41667 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
41617 CTAATATTGT
41627 AATGTCAAAATTAGGTGCAAC
1 AATGTCAAAATTAGGTGCAAC
41648 AATGTCAAAATTAGGTGCAA
1 AATGTCAAAATTAGGTGCAA
41668 TAATATTTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.44, C:0.12, G:0.20, T:0.24
Consensus pattern (21 bp):
AATGTCAAAATTAGGTGCAAC
Found at i:46384 original size:20 final size:20
Alignment explanation
Indices: 46359--46401 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
46349 CTTAAACGGC
46359 TCCAATAACTTCATTAATGA
1 TCCAATAACTTCATTAATGA
46379 TCCAATAACTTCATTAATGA
1 TCCAATAACTTCATTAATGA
46399 TCC
1 TCC
46402 CCAACGTTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.37, C:0.23, G:0.05, T:0.35
Consensus pattern (20 bp):
TCCAATAACTTCATTAATGA
Found at i:51705 original size:23 final size:23
Alignment explanation
Indices: 51679--51750 Score: 69
Period size: 23 Copynumber: 3.2 Consensus size: 23
51669 GGAACCGATA
51679 CCCCCTTGAAGAGGATCTGATTC
1 CCCCCTTGAAGAGGATCTGATTC
* *
51702 CCCCTTTGAATG-GGAACTGATTC
1 CCCCCTTGAA-GAGGATCTGATTC
* * *
51725 CCTCCTTG-AGAGAATC-GATAC
1 CCCCCTTGAAGAGGATCTGATTC
51746 CCCCC
1 CCCCC
51751 ACGGGTTCTG
Statistics
Matches: 39, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
21 9 0.23
22 4 0.10
23 25 0.64
24 1 0.03
ACGTcount: A:0.22, C:0.33, G:0.19, T:0.25
Consensus pattern (23 bp):
CCCCCTTGAAGAGGATCTGATTC
Found at i:71037 original size:13 final size:14
Alignment explanation
Indices: 71009--71037 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
70999 ATATTTTATA
71009 ATATTTTTACTATT
1 ATATTTTTACTATT
71023 ATATTTTTACT-TT
1 ATATTTTTACTATT
71036 AT
1 AT
71038 TTAATATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.27
14 11 0.73
ACGTcount: A:0.28, C:0.07, G:0.00, T:0.66
Consensus pattern (14 bp):
ATATTTTTACTATT
Found at i:73001 original size:144 final size:144
Alignment explanation
Indices: 72810--73162 Score: 354
Period size: 144 Copynumber: 2.5 Consensus size: 144
72800 TCTGGATTTG
* * * * * * * * *
72810 TTTTCTCCGATTCACCACCGTCTA-CGGTCCGATCGTCATGAAATTTCAGTATGCTGTTCGTGTT
1 TTTTCTCCGATCCACCGCCGTCCACCGTTCTGATCGTCCTGAATTTTCAGTATGTTGTTCGTGAT
* * * ** * * * *
72874 TATATTACACAACTTTTCACTATTTGAAGTATTGATCGGAGAACCCGATCGCCGGAAAAAAGGCT
66 GATATCACACAAC-TTTCACCATCGGAA-TATTAATCGGAGAACCCGATCGCAGG-AAAAAGACC
72939 AAAAACCGTTCGACTTA
128 AAAAACCGTTCGACTTA
** * *
72956 -TTTCTCCGAT-CTGCGTCGTCCACCG-TCTGATTGTCCTGAATTTTCAGTATGTTGTTCGTGAT
1 TTTTCTCCGATCCACCGCCGTCCACCGTTCTGATCGTCCTGAATTTTCAGTATGTTGTTCGTGAT
* * * * * * * * *
73018 GGTCTCGCGCAACTTTGACCGTCGGAATGTTAATCGGAGATCCCGATCGCAGGAAAGAGACCAAA
66 GATATCACACAACTTTCACCATCGGAATATTAATCGGAGAACCCGATCGCAGGAAAAAGACCAAA
*
73083 AACCGTTCGGCTTA
131 AACCGTTCGACTTA
*
73097 TTTTCTCTGATCCACCGCCGTCCACCGTTCTGATCGTCCTGAATTTTCAGTATGTTGTTCGTGAT
1 TTTTCTCCGATCCACCGCCGTCCACCGTTCTGATCGTCCTGAATTTTCAGTATGTTGTTCGTGAT
73162 G
66 G
73163 GTCTTGTGCA
Statistics
Matches: 168, Mismatches: 35, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
141 22 0.13
142 31 0.18
143 21 0.12
144 82 0.49
145 12 0.07
ACGTcount: A:0.22, C:0.25, G:0.21, T:0.32
Consensus pattern (144 bp):
TTTTCTCCGATCCACCGCCGTCCACCGTTCTGATCGTCCTGAATTTTCAGTATGTTGTTCGTGAT
GATATCACACAACTTTCACCATCGGAATATTAATCGGAGAACCCGATCGCAGGAAAAAGACCAAA
AACCGTTCGACTTA
Found at i:73102 original size:142 final size:146
Alignment explanation
Indices: 72908--73211 Score: 411
Period size: 144 Copynumber: 2.1 Consensus size: 146
72898 TGAAGTATTG
* * * * ** *
72908 ATCGGAGAACCCGATCGCCGGAAAAAAGGCTAAAAACCGTTCGACTTATTTCTCCGAT-CTGCGT
1 ATCGGAGATCCCGATCGCAGGAAAAAAGACCAAAAACCGTTCGACTTATTTCTCCGATCCACCGC
*
72972 CGTCCACCG-TCTGATTGTCCTGAATTTTCAGTATGTTGTTCGTGATGGTCTCGCGCAAC-TTTG
66 CGTCCACCGTTCTGATCGTCCTGAATTTTCAGTATGTTGTTCGTGATGGTCTCGCGCAACTTTTG
*
73035 ACCG-TCGGAATGTTA
131 ACCGTTCGGAATGGTA
* * *
73050 ATCGGAGATCCCGATCGCAGG-AAAGAGACCAAAAACCGTTCGGCTTATTTTCTCTGATCCACCG
1 ATCGGAGATCCCGATCGCAGGAAAAAAGACCAAAAACCGTTCGACTTA-TTTCTCCGATCCACCG
* *
73114 CCGTCCACCGTTCTGATCGTCCTGAATTTTCAGTATGTTGTTCGTGATGGTCTTGTGCAACTTTT
65 CCGTCCACCGTTCTGATCGTCCTGAATTTTCAGTATGTTGTTCGTGATGGTCTCGCGCAACTTTT
*
73179 GACCGTTCGGAATGGTG
130 GACCGTTCGGAATGGTA
* *
73196 ATCGAAGATTCCGATC
1 ATCGGAGATCCCGATC
73212 AACGACGAGA
Statistics
Matches: 140, Mismatches: 17, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
141 22 0.16
142 28 0.20
143 12 0.09
144 47 0.34
145 8 0.06
146 23 0.16
ACGTcount: A:0.22, C:0.25, G:0.23, T:0.30
Consensus pattern (146 bp):
ATCGGAGATCCCGATCGCAGGAAAAAAGACCAAAAACCGTTCGACTTATTTCTCCGATCCACCGC
CGTCCACCGTTCTGATCGTCCTGAATTTTCAGTATGTTGTTCGTGATGGTCTCGCGCAACTTTTG
ACCGTTCGGAATGGTA
Found at i:73870 original size:111 final size:111
Alignment explanation
Indices: 73694--73944 Score: 359
Period size: 111 Copynumber: 2.3 Consensus size: 111
73684 TGTCACTCAG
* * *
73694 GGAATATCAGATCTGGG-GATGTTTATTCATTGAATCGTGGCAAGACTTGTTCCGCTGTCACTCA
1 GGAATATCAGATCTGGGAGA-GTTGATCCATTGAATCGTGGCAAGACTTGTTCCACTGTCACTCA
* * *
73758 GGGAATATC-AATCCTGAAAAAGAGGGATATGTTCCGCTTCTTCTGAA
65 GGGAATATCAAATCCTAAAAAAAAGGGATATGTTCCGC-TCTTCTAAA
73805 GGAATATCAGATCTGGGAGAGTTGATCCATTGAATCGTGGCAAGACTTGTTCCACTGTCACTCAG
1 GGAATATCAGATCTGGGAGAGTTGATCCATTGAATCGTGGCAAGACTTGTTCCACTGTCACTCAG
* *
73870 GGAATATCAAATCTTAAAAAAAAGGGATCTGTTCCGCTCTTCTAAA
66 GGAATATCAAATCCTAAAAAAAAGGGATATGTTCCGCTCTTCTAAA
*
73916 GGGA-ATCA-ATCT-GGATGAGTTGATCCATT
1 GGAATATCAGATCTGGGA-GAGTTGATCCATT
73945 CCACTGTCAC
Statistics
Matches: 128, Mismatches: 9, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
108 3 0.02
109 17 0.13
110 4 0.03
111 78 0.61
112 26 0.20
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (111 bp):
GGAATATCAGATCTGGGAGAGTTGATCCATTGAATCGTGGCAAGACTTGTTCCACTGTCACTCAG
GGAATATCAAATCCTAAAAAAAAGGGATATGTTCCGCTCTTCTAAA
Found at i:74183 original size:134 final size:134
Alignment explanation
Indices: 73833--74651 Score: 1153
Period size: 134 Copynumber: 6.2 Consensus size: 134
73823 GAGTTGATCC
* * * * * *
73833 ATTGAATCGTGGCAAGACTTGTTCCACTGTCACTCAGGGAATATCAAATCTT-AAAAAAAAGGGA
1 ATTGAATCATGG-TAGACTTGTTCCGCTGTCACTCAGGGAATATCAAATCTTGAAAGAGAA-TGA
* *
73897 TCTGTTCCGC-TCTTCTAAAGGG-A-ATCA-ATCTGGATGAGTTGATCCATTCCACTGTCACTCA
64 TCTGTTCCGCTTCTTCTGAAGGGAATATCAGATCTGGATGAGTTGATCCATTCCGCTGTCACTCA
73958 GGGAAG
129 GGGAAG
* * * * *
73964 ATTGAATCGTGGTAGACTTGTTCTGCTGTCACTCAGGGAATATCAAGTCTTGAAA-AAAATCATC
1 ATTGAATCATGGTAGACTTGTTCCGCTGTCACTCAGGGAATATCAAATCTTGAAAGAGAATGATC
* * * *
74028 TATTTCGCTTCTTCTAAAGGGAATATCAGAACTGGATGAGTTGATCCATTCCGCTGTCACTCAGG
66 TGTTCCGCTTCTTCTGAAGGGAATATCAGATCTGGATGAGTTGATCCATTCCGCTGTCACTCAGG
74093 GAAG
131 GAAG
*
74097 ATTGAATCATGGTTAGACTTGTTCCGATGTCACTCAGGGAATATCAAATCTTGAAAGAGAATGAT
1 ATTGAATCATGG-TAGACTTGTTCCGCTGTCACTCAGGGAATATCAAATCTTGAAAGAGAATGAT
*
74162 ATGTTCCGC-T-TTCTTGAAGGGAATATCAGATCTGGATGAGTTGATCCATTCCGCTGTCACTCA
65 CTGTTCCGCTTCTTC-TGAAGGGAATATCAGATCTGGATGAGTTGATCCATTCCGCTGTCACTCA
74225 GGGAAG
129 GGGAAG
* *
74231 ATTGAATCATGGTAGACGTGTTCCGCTGTCACTCAGGGAATATCAAATCTTGAAAGAGAATGATA
1 ATTGAATCATGGTAGACTTGTTCCGCTGTCACTCAGGGAATATCAAATCTTGAAAGAGAATGATC
* * *
74296 TGTTCCGCTTCTTCTGAAGGGAATATCAGATTTGGATGAGTTGATTCATTCCACTGTCACTCAAG
66 TGTTCCGCTTCTTCTGAAGGGAATATCAGATCTGGATGAGTTGATCCATTCCGCTGTCACTC-AG
*
74361 GAAAG
130 GGAAG
* * *
74366 ATTGAATCATGGTAGACTTGTTCTGCTGTCACTCAAGGAATATCAAATCTTGAAAGAGAATGATT
1 ATTGAATCATGGTAGACTTGTTCCGCTGTCACTCAGGGAATATCAAATCTTGAAAGAGAATGATC
* * * * * *
74431 TGTT-CGCTTATTCTGAAGGGAA-ATCATATCTGAATGAGTTAATTCATTCCGCTGT--CGC--G
66 TGTTCCGCTTCTTCTGAAGGGAATATCAGATCTGGATGAGTTGATCCATTCCGCTGTCACTCAGG
74490 GAAG
131 GAAG
*
74494 ATTGAATCATGGTAGACTTGTTCCGCTGTCACTCAGGGAATATCAAATCGTGAAAGAGAATGATC
1 ATTGAATCATGGTAGACTTGTTCCGCTGTCACTCAGGGAATATCAAATCTTGAAAGAGAATGATC
* * *
74559 TGTTCCGCTTCTTCTGAAGGGAATATCAGATCTGAATGAGTTGATTCATTCCGCAGTCACTCAGG
66 TGTTCCGCTTCTTCTGAAGGGAATATCAGATCTGGATGAGTTGATCCATTCCGCTGTCACTCAGG
74624 GAAG
131 GAAG
74628 ATTGAATCATGGTAGACTTGTTCC
1 ATTGAATCATGGTAGACTTGTTCC
74652 ACTTCTTTGT
Statistics
Matches: 623, Mismatches: 48, Indels: 31
0.89 0.07 0.04
Matches are distributed among these distances:
128 69 0.11
129 26 0.04
130 81 0.13
131 18 0.03
132 6 0.01
133 139 0.22
134 198 0.32
135 86 0.14
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (134 bp):
ATTGAATCATGGTAGACTTGTTCCGCTGTCACTCAGGGAATATCAAATCTTGAAAGAGAATGATC
TGTTCCGCTTCTTCTGAAGGGAATATCAGATCTGGATGAGTTGATCCATTCCGCTGTCACTCAGG
GAAG
Found at i:74585 original size:263 final size:263
Alignment explanation
Indices: 73833--74651 Score: 1141
Period size: 263 Copynumber: 3.1 Consensus size: 263
73823 GAGTTGATCC
* * * * * *
73833 ATTGAATCGTGGCAAGACTTGTTCCACTGTCACTCAGGGAATATCAAATCTT-AAAAAAAAGGGA
1 ATTGAATCATGGCTAGACTTGTTCCGCTGTCACTCAGGGAATATCAAATCTTGAAAGAGAA-TGA
* * *
73897 TCTGTTCCGCTCTTCTAAAGGG-AATCAATCTGGATGAGTTGATCCATTCCACTGTCACTCAGGG
65 TATGTTCCGCT-TTCTGAAGGGAAATCAATCTGGATGAGTTGATCCATTCCGCTGT-ACTCA-GG
* * * * *
73961 AAGATTGAATCGTGGTAGACTTGTTCTGCTGTCACTCAGGGAATATCAAGTCTTGAAA-AAAATC
127 AAGATTGAATCATGGTAGACTTGTTCCGCTGTCACTCAGGGAATATCAAATCTTGAAAGAGAATG
* * * * *
74025 ATCTATTTCGCTTCTTCTAAAGGGAATATCAGAACTGGATGAGTTGATCCATTCCGCTGTCACTC
192 ATCTGTTCCGCTTCTTCTGAAGGGAATATCAGATCTGGATGAGTTGATTCATTCCGCTGTCACTC
74090 AGGGAAG
257 AGGGAAG
* *
74097 ATTGAATCATGGTTAGACTTGTTCCGATGTCACTCAGGGAATATCAAATCTTGAAAGAGAATGAT
1 ATTGAATCATGGCTAGACTTGTTCCGCTGTCACTCAGGGAATATCAAATCTTGAAAGAGAATGAT
74162 ATGTTCCGCTTTCTTGAAGGGAATATCAGATCTGGATGAGTTGATCCATTCCGCTGTCACTCAGG
66 ATGTTCCGCTTTC-TGAAGGGAA-ATCA-ATCTGGATGAGTTGATCCATTCCGCTGT-ACTCA-G
*
74227 GAAGATTGAATCATGGTAGACGTGTTCCGCTGTCACTCAGGGAATATCAAATCTTGAAAGAGAAT
126 GAAGATTGAATCATGGTAGACTTGTTCCGCTGTCACTCAGGGAATATCAAATCTTGAAAGAGAAT
* * *
74292 GATATGTTCCGCTTCTTCTGAAGGGAATATCAGATTTGGATGAGTTGATTCATTCCACTGTCACT
191 GATCTGTTCCGCTTCTTCTGAAGGGAATATCAGATCTGGATGAGTTGATTCATTCCGCTGTCACT
*
74357 CAAGGAAAG
256 C-AGGGAAG
* *
74366 ATTGAATCATGG-TAGACTTGTTCTGCTGTCACTCAAGGAATATCAAATCTTGAAAGAGAATGAT
1 ATTGAATCATGGCTAGACTTGTTCCGCTGTCACTCAGGGAATATCAAATCTTGAAAGAGAATGAT
* * * * *
74430 TTGTT-CGCTTATTCTGAAGGGAAATCATATCTGAATGAGTTAATTCATTCCGCTGT-CGC-GGA
66 ATGTTCCGC-T-TTCTGAAGGGAAATCA-ATCTGGATGAGTTGATCCATTCCGCTGTACTCAGGA
*
74492 AGATTGAATCATGGTAGACTTGTTCCGCTGTCACTCAGGGAATATCAAATCGTGAAAGAGAATGA
128 AGATTGAATCATGGTAGACTTGTTCCGCTGTCACTCAGGGAATATCAAATCTTGAAAGAGAATGA
* *
74557 TCTGTTCCGCTTCTTCTGAAGGGAATATCAGATCTGAATGAGTTGATTCATTCCGCAGTCACTCA
193 TCTGTTCCGCTTCTTCTGAAGGGAATATCAGATCTGGATGAGTTGATTCATTCCGCTGTCACTCA
74622 GGGAAG
258 GGGAAG
74628 ATTGAATCATGG-TAGACTTGTTCC
1 ATTGAATCATGGCTAGACTTGTTCC
74652 ACTTCTTTGT
Statistics
Matches: 502, Mismatches: 44, Indels: 20
0.89 0.08 0.04
Matches are distributed among these distances:
262 29 0.06
263 128 0.25
264 65 0.13
265 9 0.02
266 4 0.01
267 122 0.24
268 124 0.25
269 21 0.04
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (263 bp):
ATTGAATCATGGCTAGACTTGTTCCGCTGTCACTCAGGGAATATCAAATCTTGAAAGAGAATGAT
ATGTTCCGCTTTCTGAAGGGAAATCAATCTGGATGAGTTGATCCATTCCGCTGTACTCAGGAAGA
TTGAATCATGGTAGACTTGTTCCGCTGTCACTCAGGGAATATCAAATCTTGAAAGAGAATGATCT
GTTCCGCTTCTTCTGAAGGGAATATCAGATCTGGATGAGTTGATTCATTCCGCTGTCACTCAGGG
AAG
Found at i:74592 original size:397 final size:395
Alignment explanation
Indices: 73833--74654 Score: 1192
Period size: 397 Copynumber: 2.1 Consensus size: 395
73823 GAGTTGATCC
* *
73833 ATTGAATCGTGGCAAGACTTGTTCCACTGTCACTCAGGGAATATCAAATCTTAAAAAAAAGGGAT
1 ATTGAATCATGG-TAGACTTGTTCCACTGTCACTCAGGGAATATCAAATCTTAAAAAAAAGGGAT
* *
73898 CTGTTCCGCTCTTCTAAAGGGAATCAATCTGGATGAGTTGATCCATTCCACTGTCACTCAGGGAA
65 ATGTTCCGCTCTTCTAAAGGGAATCAATCTGGATGAGTTGATCCATTCCACTGTCACTCAGGAAA
* * *
73963 GATTGAATCGTGGTAGACTTGTTCTGCTGTCACTCAGGGAATATCAAGTCTTGAAAAAAATCATC
130 GATTGAATCATGGTAGACTTGTTCTGCTGTCACTCAAGGAATATCAAATCTTGAAAAAAATCATC
* * * *
74028 TATTTCGCTTCTTCTAAAGGGAATATCAGAACTGGATGAGTTGATCCATTCCGCTGTCACTCAGG
195 TATTTCGCTTATTCTAAAGGGAATATCAGAACTGAATGAGTTAATCCATTCCGCTGT-ACGCA-G
*
74093 GAAGATTGAATCATGGTTAGACTTGTTCCGATGTCACTCAGGGAATATCAAATCTTGAAAGAGAA
258 GAAGATTGAATCATGGTTAGACTTGTTCCGATGTCACTCAGGGAATATCAAATCGTGAAAGAGAA
* *
74158 TGATATGTTCCGCTTTCTTGAAGGGAATATCAGATCTGGATGAGTTGATCCATTCCGCTGTCACT
323 TGATATGTTCCGCTTTCTTGAAGGGAATATCAGATCTGAATGAGTTGATCCATTCCGCAGTCACT
74223 CAGGGAAG
388 CAGGGAAG
* * * * *
74231 ATTGAATCATGGTAGACGTGTTCCGCTGTCACTCAGGGAATATCAAATCTTGAAAGAGAA-TGAT
1 ATTGAATCATGGTAGACTTGTTCCACTGTCACTCAGGGAATATCAAATCTT-AAAAAAAAGGGAT
* * *
74295 ATGTTCCGCTTCTTCTGAAGGGAATATCAGATTTGGATGAGTTGATTCATTCCACTGTCACTCAA
65 ATGTTCCGC-TCTTCTAAAGGG-A-ATCA-ATCTGGATGAGTTGATCCATTCCACTGTCACTC-A
*
74360 GGAAAGATTGAATCATGGTAGACTTGTTCTGCTGTCACTCAAGGAATATCAAATCTTGAAAGAGA
125 GGAAAGATTGAATCATGGTAGACTTGTTCTGCTGTCACTCAAGGAATATCAAATCTTGAAA-AAA
* * * * *
74425 ATGAT-T-TGTTCGCTTATTCTGAAGGGAA-ATCATATCTGAATGAGTTAATTCATTCCGCTGT-
189 ATCATCTAT-TTCGCTTATTCTAAAGGGAATATCAGAACTGAATGAGTTAATCCATTCCGCTGTA
*
74486 CGC-GGAAGATTGAATCATGG-TAGACTTGTTCCGCTGTCACTCAGGGAATATCAAATCGTGAAA
253 CGCAGGAAGATTGAATCATGGTTAGACTTGTTCCGATGTCACTCAGGGAATATCAAATCGTGAAA
* *
74549 GAGAATGATCTGTTCCGC-TTCTTCTGAAGGGAATATCAGATCTGAATGAGTTGATTCATTCCGC
318 GAGAATGATATGTTCCGCTTTC-T-TGAAGGGAATATCAGATCTGAATGAGTTGATCCATTCCGC
74613 AGTCACTCAGGGAAG
381 AGTCACTCAGGGAAG
74628 ATTGAATCATGGTAGACTTGTTCCACT
1 ATTGAATCATGGTAGACTTGTTCCACT
74655 TCTTTGTACC
Statistics
Matches: 381, Mismatches: 33, Indels: 21
0.88 0.08 0.05
Matches are distributed among these distances:
395 3 0.01
396 59 0.15
397 141 0.37
398 28 0.07
399 3 0.01
400 4 0.01
401 60 0.16
402 77 0.20
403 6 0.02
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (395 bp):
ATTGAATCATGGTAGACTTGTTCCACTGTCACTCAGGGAATATCAAATCTTAAAAAAAAGGGATA
TGTTCCGCTCTTCTAAAGGGAATCAATCTGGATGAGTTGATCCATTCCACTGTCACTCAGGAAAG
ATTGAATCATGGTAGACTTGTTCTGCTGTCACTCAAGGAATATCAAATCTTGAAAAAAATCATCT
ATTTCGCTTATTCTAAAGGGAATATCAGAACTGAATGAGTTAATCCATTCCGCTGTACGCAGGAA
GATTGAATCATGGTTAGACTTGTTCCGATGTCACTCAGGGAATATCAAATCGTGAAAGAGAATGA
TATGTTCCGCTTTCTTGAAGGGAATATCAGATCTGAATGAGTTGATCCATTCCGCAGTCACTCAG
GGAAG
Found at i:74999 original size:20 final size:20
Alignment explanation
Indices: 74961--75011 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
74951 GGATGGCCCG
* *
74961 AAGGACTTATCATCTTGCTCTA
1 AAGG-CTTA-CATCATGCTCGA
74983 AAGGCTTACATCATGCTCGA
1 AAGGCTTACATCATGCTCGA
*
75003 AAGACTTAC
1 AAGGCTTAC
75012 TGATGGCCCG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
20 18 0.69
21 4 0.15
22 4 0.15
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (20 bp):
AAGGCTTACATCATGCTCGA
Found at i:75087 original size:180 final size:175
Alignment explanation
Indices: 74812--75170 Score: 488
Period size: 180 Copynumber: 2.0 Consensus size: 175
74802 ATGATTTTTT
*
74812 CATCATGTTGAAAGACTTACTGAGGCCCGAAGGACTTATAAATTGTGAATTTGAAAATCACATTC
1 CATCATGTCGAAAGACTTACTGAGGCCCGAAGGACTTATAAATTGTGAATTTGAAAATCACATTC
** * * * * *
74877 TTCGTTTTAAAAAAAATTCCCTCTTCATTTTTTCATTTTC-ATTTCATGTGAAACATCATACCCG
66 TTCGTTTT--AAAAAATTCCAACATCA-TTTTTCATTCTCAAATTCATGTGAAAAATCAGACCCG
74941 AAGGTTTTATGGATGGCCCGAAGGACTTATCATCTTGCTCTAAAGGCTTA
128 AAGGTTTTATGGATGGCCCGAAGGACTT-T-ATCTTGCTCTAAAGGCTTA
* * *
74991 CATCATGCTCGAAAGACTTACTGATGGCCCGAATGACTTATAAATTGTGAAATTTTGAAACTCGC
1 CATCATG-TCGAAAGACTTACTGA-GGCCCGAAGGACTTATAAATTGTG-AA-TTTGAAAATCAC
* * *
75056 ATTCTTCGTTTT-CAAAATTCCAACATCATTTTTCATTCTCAAATTCATGTGAAAAATCCGACCT
62 ATTCTTCGTTTTAAAAAATTCCAACATCATTTTTCATTCTCAAATTCATGTGAAAAATCAGACCC
*
75120 GAAGGTTTTATGGATGGCTCGAAGGACTTTATCTTGCTCTAAAGGCTTA
127 GAAGGTTTTATGGATGGCCCGAAGGACTTTATCTTGCTCTAAAGGCTTA
75169 CA
1 CA
75171 GATGACACGA
Statistics
Matches: 160, Mismatches: 15, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
178 21 0.13
179 19 0.12
180 73 0.46
181 23 0.14
182 2 0.01
183 22 0.14
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.35
Consensus pattern (175 bp):
CATCATGTCGAAAGACTTACTGAGGCCCGAAGGACTTATAAATTGTGAATTTGAAAATCACATTC
TTCGTTTTAAAAAATTCCAACATCATTTTTCATTCTCAAATTCATGTGAAAAATCAGACCCGAAG
GTTTTATGGATGGCCCGAAGGACTTTATCTTGCTCTAAAGGCTTA
Found at i:75340 original size:205 final size:206
Alignment explanation
Indices: 74991--75768 Score: 979
Period size: 213 Copynumber: 3.7 Consensus size: 206
74981 TAAAGGCTTA
* * *
74991 CATCATGCTCGAAAGACTTACTGATGGCCCGAATGACTTATAAATTGTGAAATTTTGAAACTCGC
1 CATCATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCAC
* * *
75056 ATTCTTCGTTTTC--AAAATTC-CAACATCATTTTTCATTCTCAAATTCATGTGAAAA-ATCCGA
66 ATTCTTCATTTTCAAAAAATTCACAACATCATTTTTCATTTTCAAATTCATGTGAAAACATCCTA
* * * *
75117 CCTGAAGGTTTTATGGATGGCTCGAAGGACTT-T-ATCTTGCTCTAAAGGCTTACAGATGACACG
131 CCCGAAGGTTTTATGGATGGCCCAAAGGACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCG
75180 AAAAGGATTTAAG
196 --AAGGATTTAAG
*
75193 CATCATGCTTGAAAGACTTACTGATGGCCCG-AGGACTTATAAATTGTGAAATTTTGAAAATCAC
1 CATCATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCAC
* * * *
75257 ATTCTTCATTTTCAAAAAAAATTC-CATCTTCATTTTTTATTTTCAATTTCATGTGAAAA-ATCC
66 ATTCTTCATTTTC--AAAAAATTCACAACATCATTTTTCATTTTCAAATTCATGTGAAAACATCC
*
75320 TACCCGAAGGTTTTATGGATGGCCCAAAGGACTTATCATCTTGCTCTAAAGGCTTAAAGATGACC
129 TACCCGAAGGTTTTATGGATGGCCCAAAGGACTTATCATCTTGCTCTAAAGGCTTACAGATGACC
75385 CGAAGGATTTAAG
194 CGAAGGATTTAAG
* * *
75398 CATCATGCTCGAAAGACTTACTGAT-G-CCGAAGAACTTATAAATCGTGAATTTTTGAAAAT-AT
1 CATCATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCA-
* * *
75460 CATTCTTCGTTTTCAAAAATTTCATCTTCGTAAAACATCATTTTTTTCATTTTCAAATTCA-ATG
65 CATTCTTCATTTTCAAAAA----A--TTC--ACAACATCA--TTTTTCATTTTCAAATTCATGTG
* * *
75524 AAAATATCCTACCCGAAGGTTTTATGGATGACCCAAAGGACTTGTCATCTTGCTCTAAAGGCTTA
120 AAAACATCCTACCCGAAGGTTTTATGGATGGCCCAAAGGACTTATCATCTTGCTCTAAAGGCTTA
75589 CAGATGACCCGAAGGATTTAAG
185 CAGATGACCCGAAGGATTTAAG
* * *
75611 CATCATGCTCGAAAGACTTACTGATGGCCCAAAGGACTTATAAATTGTGAAATTTTGAAACTCGC
1 CATCATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCAC
* * *
75676 ATTCTTCATTTTCAAAAATTTCATCATCTTAAAACATCAATTTTCATTTCCAAATTCATGTGAAA
66 ATTCTTCATTTTCAAAAA----AT--TC--ACAACATCATTTTTCATTTTCAAATTCATGTGAAA
75741 ACATCCTACCCGAAGGTTTTATGGATGG
123 ACATCCTACCCGAAGGTTTTATGGATGG
75769 ATTTGCTTCA
Statistics
Matches: 507, Mismatches: 43, Indels: 40
0.86 0.07 0.07
Matches are distributed among these distances:
201 42 0.08
202 35 0.07
203 4 0.01
204 41 0.08
205 106 0.21
206 2 0.00
207 28 0.06
208 3 0.01
211 5 0.01
212 6 0.01
213 139 0.27
214 32 0.06
215 64 0.13
ACGTcount: A:0.33, C:0.19, G:0.15, T:0.33
Consensus pattern (206 bp):
CATCATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCAC
ATTCTTCATTTTCAAAAAATTCACAACATCATTTTTCATTTTCAAATTCATGTGAAAACATCCTA
CCCGAAGGTTTTATGGATGGCCCAAAGGACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCG
AAGGATTTAAG
Found at i:75810 original size:36 final size:36
Alignment explanation
Indices: 75764--75963 Score: 201
Period size: 36 Copynumber: 5.9 Consensus size: 36
75754 AGGTTTTATG
*
75764 GATGGATTTGCTTCACTACACTTTGGTGAAGGCTTAA
1 GATGG-TTTGCTTCACTACTCTTTGGTGAAGGCTTAA
* *
75801 GATGGTTTGCTTCACTCCTCTTCGGTGAAGGCTTAA
1 GATGGTTTGCTTCACTACTCTTTGGTGAAGGCTTAA
75837 GATGGTTTGCTTCACTACTC--T-GTGAAGGC-TAA
1 GATGGTTTGCTTCACTACTCTTTGGTGAAGGCTTAA
75869 GATGG--TG-TTCACTACTCTTCT-GTGAAGGCTTAA
1 GATGGTTTGCTTCACTACTCTT-TGGTGAAGGCTTAA
* ** **
75902 AAT-AATTGCTT--CTACTCTCCGGTGAAGGCTTAA
1 GATGGTTTGCTTCACTACTCTTTGGTGAAGGCTTAA
**
75935 GATGG--TGCTTCACTACTCTCCGGTGAAGG
1 GATGGTTTGCTTCACTACTCTTTGGTGAAGG
75964 TTAGGATTGA
Statistics
Matches: 141, Mismatches: 11, Indels: 25
0.80 0.06 0.14
Matches are distributed among these distances:
29 10 0.07
30 2 0.01
32 22 0.16
33 34 0.24
34 19 0.13
35 2 0.01
36 47 0.33
37 5 0.04
ACGTcount: A:0.21, C:0.20, G:0.24, T:0.34
Consensus pattern (36 bp):
GATGGTTTGCTTCACTACTCTTTGGTGAAGGCTTAA
Found at i:75897 original size:65 final size:67
Alignment explanation
Indices: 75764--75963 Score: 228
Period size: 65 Copynumber: 2.9 Consensus size: 67
75754 AGGTTTTATG
* *
75764 GATGGATTTGCTTCACTACACTTTGGTGAAGGCTTAAGATGGTTTGCTTCACTCCTCTTCGGTGA
1 GATGG-TTTGCTTCACT--ACTCT-GTGAAGGCTTAAGATGG--TGCTTCACTACTCTTCGGTGA
75829 AGGCTTAA
60 AGGCTTAA
*
75837 GATGGTTTGCTTCACTACTCTGTGAAGGC-TAAGATGGTG-TTCACTACTCTTCTGTGAAGGCTT
1 GATGGTTTGCTTCACTACTCTGTGAAGGCTTAAGATGGTGCTTCACTACTCTTCGGTGAAGGCTT
75900 AA
66 AA
* ** * *
75902 AAT-AATTGCTTCTACT-CTCCGGTGAAGGCTTAAGATGGTGCTTCACTACTCTCCGGTGAAGG
1 GATGGTTTGCTTC-ACTACT-CTGTGAAGGCTTAAGATGGTGCTTCACTACTCTTCGGTGAAGG
75964 TTAGGATTGA
Statistics
Matches: 114, Mismatches: 9, Indels: 14
0.83 0.07 0.10
Matches are distributed among these distances:
64 9 0.08
65 38 0.33
66 12 0.11
67 19 0.17
68 8 0.07
69 8 0.07
70 4 0.04
72 11 0.10
73 5 0.04
ACGTcount: A:0.21, C:0.20, G:0.24, T:0.34
Consensus pattern (67 bp):
GATGGTTTGCTTCACTACTCTGTGAAGGCTTAAGATGGTGCTTCACTACTCTTCGGTGAAGGCTT
AA
Found at i:75927 original size:33 final size:33
Alignment explanation
Indices: 75788--75963 Score: 112
Period size: 33 Copynumber: 5.2 Consensus size: 33
75778 ACTACACTTT
* * * *
75788 GGTGAAGGCTTAAGATGGTTTGCTTCACTCCTCTTC
1 GGTGAAGGCTTAAAATAG--TGCTT-ACTACTCTCC
* *
75824 GGTGAAGGCTTAAGATGGTTTGCTTCACTACTCT--
1 GGTGAAGGCTTAAAATAG--TGCTT-ACTACTCTCC
* * *
75858 -GTGAAGGC-TAAGATGGTG-TTCACTACTCTTC
1 GGTGAAGGCTTAAAATAGTGCTT-ACTACTCTCC
* *
75889 TGTGAAGGCTTAAAATAATTGCTT-CTACTCTCC
1 GGTGAAGGCTTAAAAT-AGTGCTTACTACTCTCC
* *
75922 GGTGAAGGCTTAAGATGGTGCTTCACTACTCTCC
1 GGTGAAGGCTTAAAATAGTGCTT-ACTACTCTCC
75956 GGTGAAGG
1 GGTGAAGG
75964 TTAGGATTGA
Statistics
Matches: 123, Mismatches: 9, Indels: 18
0.82 0.06 0.12
Matches are distributed among these distances:
29 11 0.09
30 2 0.02
32 21 0.17
33 35 0.28
34 19 0.15
35 2 0.02
36 33 0.27
ACGTcount: A:0.22, C:0.20, G:0.26, T:0.33
Consensus pattern (33 bp):
GGTGAAGGCTTAAAATAGTGCTTACTACTCTCC
Done.