Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002565.1 Hibiscus syriacus cultivar Beakdansim tig00005206_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54351

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
487--642
31
5.0
31
94
1
260
19
18
23
38
1.93
1417--1543
62
2.0
62
98
0
245
22
17
21
38
1.93
2428--2466
17
2.3
17
86
0
51
12
33
25
28
1.93
5136--5172
19
1.9
19
100
0
74
40
16
5
37
1.71
12834--12909
32
2.4
32
82
4
91
43
5
15
35
1.70
12969--13209
32
7.1
32
67
13
117
41
9
14
35
1.77
15539--15569
3
10.0
3
93
6
53
3
32
0
64
1.09
16162--16235
21
3.6
21
74
3
87
21
18
25
33
1.96
16142--16258
41
2.9
41
94
0
207
17
18
23
39
1.92
16268--16315
19
2.5
19
100
0
96
18
20
18
41
1.90
16142--16296
82
1.9
81
84
7
206
18
19
23
39
1.92
16227--16358
60
2.1
62
86
4
178
20
17
20
41
1.90
16287--16391
43
2.5
41
84
6
147
22
18
19
40
1.92
17470--17563
41
2.3
41
90
5
145
38
24
17
20
1.93
17470--17544
21
3.6
21
75
10
82
40
22
17
20
1.92
17470--17563
21
4.6
19
71
15
71
38
24
17
20
1.93
17556--17607
20
2.6
20
90
0
68
44
19
21
15
1.87
23241--23314
37
2.0
36
87
7
105
51
4
0
44
1.20
24204--24241
20
1.9
20
94
0
67
23
21
10
44
1.83
35268--35447
65
2.8
65
86
2
238
29
17
23
29
1.97
35288--35495
65
3.2
66
81
7
214
28
16
23
31
1.96

Tables:   1

The End!