genome.fa.s2566.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002566.1 Hibiscus syriacus cultivar Beakdansim tig00005209_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73291

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2514--2678	77	2.2	73	88	4	240	25	21	23	30	1.99
3431--3475	24	1.9	23	82	13	56	48	6	26	17	1.72
2741--3494	113	6.7	113	88	2	1054	37	15	19	27	1.92
3844--3897	19	2.8	19	85	0	72	31	0	1	66	1.02
3846--3897	22	2.4	22	86	0	68	32	0	1	65	1.04
3836--3897	3	22.0	3	78	18	62	30	0	1	67	1.00
5450--5682	118	2.0	117	83	5	292	36	8	8	45	1.65
8998--9042	24	2.0	22	86	8	63	31	0	4	64	1.13
10658--10723	2	33.0	2	100	0	132	50	0	0	50	1.00
11312--11354	17	2.6	17	80	20	56	53	0	6	39	1.28
16509--16630	20	5.9	20	68	14	70	38	20	18	22	1.93
16633--16824	20	9.4	21	75	6	139	39	24	17	19	1.92
16670--16826	61	2.6	59	83	6	206	39	26	17	17	1.91
16643--16826	41	4.5	40	80	8	160	38	25	17	19	1.92
16633--16824	101	1.9	102	89	1	296	39	24	17	19	1.92
16953--17023	20	3.5	20	96	3	126	38	19	19	22	1.94
17521--17612	33	2.8	33	89	1	139	17	21	16	44	1.86
19102--19213	42	2.6	42	73	8	109	25	17	36	20	1.94
19691--19777	20	4.3	20	92	0	138	39	20	19	20	1.93
19827--19912	19	4.8	19	77	13	92	9	17	25	47	1.77
19852--19878	14	1.9	14	100	0	54	7	14	29	48	1.71
19833--19896	33	1.9	33	93	0	110	9	15	26	48	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20000--20379	94	4.1	94	95	1	647	47	18	12	22	1.81
22060--22115	20	2.8	20	86	0	85	41	17	23	17	1.90
22100--22134	14	2.5	14	100	0	70	42	17	25	14	1.86
22127--22210	19	4.7	19	78	14	106	45	20	22	11	1.83
22113--22188	33	2.3	33	93	0	134	44	19	23	11	1.84
22100--22169	14	4.6	14	75	16	59	42	18	25	12	1.86
22222--22277	14	3.6	14	76	21	58	10	21	21	46	1.81
22206--22298	33	2.8	33	85	1	114	10	18	23	47	1.80
22237--22340	20	5.6	20	81	12	107	12	15	19	52	1.73
22898--23054	20	7.7	20	76	10	149	19	17	26	36	1.94
22900--23031	21	6.4	21	78	4	144	18	17	25	37	1.93
22900--23053	41	3.8	41	87	3	213	19	16	25	37	1.93
23038--23133	42	2.3	42	76	5	97	22	19	22	34	1.97
23060--23175	21	5.7	20	69	14	76	21	19	25	33	1.97
24048--24377	74	4.4	75	85	2	425	40	12	13	33	1.81
24048--24371	149	2.2	149	84	3	429	40	12	13	33	1.82
24353--24417	23	2.9	23	74	2	60	36	20	10	32	1.87
24454--24748	154	1.9	156	83	5	382	43	9	9	37	1.70
24927--25175	108	2.3	108	82	5	299	38	11	10	40	1.75
24927--25207	108	2.6	108	77	9	295	37	12	10	39	1.78
26655--26689	6	5.7	6	89	3	52	34	0	48	17	1.47
27498--27523	3	8.7	3	100	0	52	65	0	34	0	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28874--28930	23	2.5	23	85	0	78	42	7	14	36	1.72
28768--29026	87	3.0	87	93	0	428	44	10	11	33	1.75
28961--29010	23	2.2	23	88	0	73	38	10	18	34	1.84
28961--29017	23	2.5	23	82	0	60	42	8	15	33	1.78
29374--29742	112	3.4	101	84	11	459	43	13	11	31	1.79
29478--29742	112	2.4	112	95	0	476	45	13	10	30	1.77
29636--29832	92	2.1	92	93	0	331	46	11	11	30	1.75
29310--29914	204	2.9	205	86	5	788	43	12	11	33	1.78
31631--31695	31	2.1	31	100	0	130	32	15	21	30	1.94
32500--32552	26	2.0	26	88	0	79	13	13	22	50	1.75
36802--37392	121	4.8	120	86	2	729	26	15	24	34	1.95
37428--37673	64	3.9	63	87	4	259	29	12	21	36	1.90
37478--37673	64	3.1	64	94	0	338	30	12	21	35	1.90
39322--39369	15	3.3	14	80	16	53	2	14	6	77	1.06
42377--42445	30	2.3	29	78	9	77	59	10	10	20	1.58
45367--45397	4	7.8	4	92	0	53	25	45	0	29	1.54
50482--50545	12	5.6	11	75	18	60	76	6	1	15	1.06
50475--50541	30	2.2	30	79	12	75	76	7	1	14	1.08
52207--52273	34	2.0	34	90	0	107	38	10	13	37	1.79
56609--56664	28	2.0	29	86	10	80	51	3	0	44	1.18
57463--57503	21	2.0	20	85	4	55	39	0	4	56	1.21
63103--63168	30	2.2	30	94	0	114	13	28	33	24	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64059--64111	26	2.0	27	82	10	65	32	1	0	66	1.03
68661--68699	14	2.8	14	100	0	78	43	0	7	48	1.31
70578--70629	21	2.5	21	78	6	52	34	15	23	26	1.94
70593--70633	21	2.0	21	90	9	66	39	7	19	34	1.80

Tables:   1

The End!