Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01002567.1 Hibiscus syriacus cultivar Beakdansim tig00005210_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 322000
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
File 1 of 2
Found at i:1198 original size:20 final size:21
Alignment explanation
Indices: 1170--1229 Score: 97
Period size: 20 Copynumber: 3.0 Consensus size: 21
1160 CTTTGAAGGT
*
1170 GTTCATTGC-GAGAGAAGGAG
1 GTTCTTTGCAGAGAGAAGGAG
1190 GTTCTTTGCAGAGAGAA-GAG
1 GTTCTTTGCAGAGAGAAGGAG
1210 GTTCTTTGCAGAGAGAAGGA
1 GTTCTTTGCAGAGAGAAGGA
1230 TGCGGAAATA
Statistics
Matches: 37, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
20 28 0.76
21 9 0.24
ACGTcount: A:0.30, C:0.10, G:0.37, T:0.23
Consensus pattern (21 bp):
GTTCTTTGCAGAGAGAAGGAG
Found at i:6719 original size:19 final size:19
Alignment explanation
Indices: 6695--6732 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
6685 ACAGCCATAG
6695 AGAAACACTGAAAGAAGAT
1 AGAAACACTGAAAGAAGAT
6714 AGAAACACTGAAAGAAGAT
1 AGAAACACTGAAAGAAGAT
6733 TACATACCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.58, C:0.11, G:0.21, T:0.11
Consensus pattern (19 bp):
AGAAACACTGAAAGAAGAT
Found at i:12925 original size:27 final size:28
Alignment explanation
Indices: 12890--12948 Score: 68
Period size: 27 Copynumber: 2.1 Consensus size: 28
12880 CATTATTTTT
* *
12890 TAAAGATATTAGTAT-TAAATTATTAAAA
1 TAAAGATATAAGTATAT-AATTAATAAAA
*
12918 TAAA-ATATAATTATATAATTAATAAAA
1 TAAAGATATAAGTATATAATTAATAAAA
12945 TAAA
1 TAAA
12949 TTGAATTTCA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
27 22 0.81
28 5 0.19
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.37
Consensus pattern (28 bp):
TAAAGATATAAGTATATAATTAATAAAA
Found at i:17381 original size:20 final size:19
Alignment explanation
Indices: 17327--17372 Score: 56
Period size: 22 Copynumber: 2.2 Consensus size: 19
17317 TCAATTTTTT
17327 AAATATATTTTAAATAAAATTG
1 AAATATATTTT---TAAAATTG
17349 AAATATATTTTTAAAATTG
1 AAATATATTTTTAAAATTG
17368 CAAAT
1 -AAAT
17373 TTCTTTTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
19 8 0.35
20 4 0.17
22 11 0.48
ACGTcount: A:0.52, C:0.02, G:0.04, T:0.41
Consensus pattern (19 bp):
AAATATATTTTTAAAATTG
Found at i:18856 original size:21 final size:22
Alignment explanation
Indices: 18831--18878 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
18821 TAGTAATAAG
**
18831 AATTTTAATTTTTTTTAAT-AT
1 AATTTTAATACTTTTTAATGAT
*
18852 AATTTTAATACTTTTTATTGAT
1 AATTTTAATACTTTTTAATGAT
18874 AATTT
1 AATTT
18879 ATTTTCATCC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
21 16 0.70
22 7 0.30
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.62
Consensus pattern (22 bp):
AATTTTAATACTTTTTAATGAT
Found at i:19500 original size:21 final size:21
Alignment explanation
Indices: 19474--19518 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
19464 CATCAAAGTT
19474 GGCTAACTTTGCCAGTTTATC
1 GGCTAACTTTGCCAGTTTATC
19495 GGCTAACTTTGCCAGTTTATC
1 GGCTAACTTTGCCAGTTTATC
19516 GGC
1 GGC
19519 CACCTTCTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (21 bp):
GGCTAACTTTGCCAGTTTATC
Found at i:23695 original size:6 final size:6
Alignment explanation
Indices: 23684--23713 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
23674 CAACTCGGGG
23684 CCAGAA CCAGAA CCAGAA CCAGAA CCAGAA
1 CCAGAA CCAGAA CCAGAA CCAGAA CCAGAA
23714 ACAGCATTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.50, C:0.33, G:0.17, T:0.00
Consensus pattern (6 bp):
CCAGAA
Found at i:24207 original size:14 final size:14
Alignment explanation
Indices: 24182--24215 Score: 52
Period size: 13 Copynumber: 2.4 Consensus size: 14
24172 AAATAGTAAG
24182 AAAATTTAAATATTA
1 AAAATTTAAATA-TA
24197 AAAATTT-AATATA
1 AAAATTTAAATATA
24210 AAAATT
1 AAAATT
24216 ATTTTAATGT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 8 0.42
14 4 0.21
15 7 0.37
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (14 bp):
AAAATTTAAATATA
Found at i:56363 original size:954 final size:955
Alignment explanation
Indices: 54514--56423 Score: 3795
Period size: 954 Copynumber: 2.0 Consensus size: 955
54504 TACTATGGTT
54514 CCTATACTAGAAATGTTGTTAGCAAACAGATGTAATGACTATGAGCACCCCTGCATTAGAAATCA
1 CCTATACTAGAAATGTTGTTAGCAAACAGATGTAATGACTATGAGCACCCCTGCATTAGAAATCA
54579 AAGTCAAAGGTGTCTTAGTCATCGTGTTATACCAAAAGTCAAACATAAACTAATAGAGGCATACA
66 AAGTCAAAGGTGTCTTAGTCATCGTGTTATACCAAAAGTCAAACATAAACTAATAGAGGCATACA
54644 AAGTGAAGAAAAGAAAAGAAAAATGAACGTACTCCAAAAGGAATATTATGTTACTCGAAATGGCA
131 AAGTGAAGAAAAGAAAAGAAAAATGAACGTACTCCAAAAGGAATATTATGTTACTCGAAATGGCA
*
54709 AATAAATTACAGATGTGAGTGACTGCAGAAGATCCTATACTGATATATAGAAGAAAAATTCTTAT
196 AATAAATTACAGATGTGAGTGACTGCAGAAGATCCTATACTGATATATAGAAGAAAAATACTTAT
54774 TTCAGTAAAACCATCATAAAGATACAAGCTATTAGTTAAAGTAGGATTCTTCTTTTAGCAATATG
261 TTCAGTAAAACCATCATAAAGATACAAGCTATTAGTTAAAGTAGGATTCTTCTTTTAGCAATATG
54839 CTGATTTTAATTGGTCTAAATTTTAAGTGAATTGTTCATTATATAGATAGCCATCATGGTCCCAC
326 CTGATTTTAATTGGTCTAAATTTTAAGTGAATTGTTCATTATATAGATAGCCATCATGGTCCCAC
54904 CACCTGGTTGCAAAAACATTGGCTCCACAACACAACAAACCAAAAGAAAATTACATTTGACTAAT
391 CACCTGGTTGCAAAAACATTGGCTCCACAACACAACAAACCAAAAGAAAATTACATTTGACTAAT
54969 GCTTCAGTAGTGATGTGTTAGTGGCATGATCATCTTCCACAAAAAAAATTTGTTAGTCAAGAACT
456 GCTTCAGTAGTGATGTGTTAGTGGCATGATCATCTTCCACAAAAAAAATTTGTTAGTCAAGAACT
55034 GAAACTAAACCACAACAAGGAACTAAAGAGTCCTATTCCACATATAAATCCTACAATACTAACTA
521 GAAACTAAACCACAACAAGGAACTAAAGAGTCCTATTCCACATATAAATCCTACAATACTAACTA
55099 TATTGACATAAAAATATTACAAGCGGATTATGCACCTTCATATTCAAAATCATGTGCTAGTACAG
586 TATTGACATAAAAATATTACAAGCGGATTATGCACCTTCATATTCAAAATCATGTGCTAGTACAG
55164 CATGAGCAGCAATATGCCGTCTCAGCCATTTCCTAGATACTCAATATAAATGAGACAGTAACAGA
651 CATGAGCAGCAATATGCCGTCTCAGCCATTTCCTAGATACTCAATATAAATGAGACAGTAACAGA
55229 ACATGTTGCTTACATGATACAGTGGAACACCACAAATACTATAAAGCACAACCGTCATCTCAGGG
716 ACATGTTGCTTACATGATACAGTGGAACACCACAAATACTATAAAGCACAACCGTCATCTCAGGG
55294 GCTGATACAGTACATGTCCACATGATAACTTTGGATTCAGTTGATTGTGGCTTCTCCAGAGTATA
781 GCTGATACAGTACATGTCCACATGATAACTTTGGATTCAGTTGATTGTGGCTTCTCCAGAGTATA
55359 AGTTTCCTCTTGAAGAACCATTCCCTTCTTTTTGGAGGACTGCAACCTCAACCATGGCTTCAATC
846 AGTTTCCTCTTGAAGAACCATTCCCTTCTTTTTGGAGGACTGCAACCTCAACCATGGCTTCAATC
55424 TACTCATTATAATATTGCATTGGGTCCCTCCAAGCTTAACATCAA
911 TACTCATTATAATATTGCATTGGGTCCCTCCAAGCTTAACATCAA
55469 CCTATACTAGAAATGTTGTTAGCAAACAGATGTAATGACTATGAGCACCCCTGCATTAGAAATCA
1 CCTATACTAGAAATGTTGTTAGCAAACAGATGTAATGACTATGAGCACCCCTGCATTAGAAATCA
55534 AAGTCAAAGGTGTCTTAGTCATCGTGTTATACCAAAAGTCAAACATAAACTAATAGAGGCATACA
66 AAGTCAAAGGTGTCTTAGTCATCGTGTTATACCAAAAGTCAAACATAAACTAATAGAGGCATACA
55599 AAGTGAAGAAAAGAAAAGAAAAATGAACGTACTCCAAAAGGAATATTATG-TACTCGAAATGGCA
131 AAGTGAAGAAAAGAAAAGAAAAATGAACGTACTCCAAAAGGAATATTATGTTACTCGAAATGGCA
55663 AATAAATTACAGATGTGAGTGACTGCAGAAGATCCTATACTGATATATAGAAGAAAAATACTTAT
196 AATAAATTACAGATGTGAGTGACTGCAGAAGATCCTATACTGATATATAGAAGAAAAATACTTAT
55728 TTCAGTAAAACCATCATAAAGATACAAGCTATTAGTTAAAGTAGGATTCTTCTTTTAGCAATATG
261 TTCAGTAAAACCATCATAAAGATACAAGCTATTAGTTAAAGTAGGATTCTTCTTTTAGCAATATG
55793 CTGATTTTAATTGGTCTAAATTTTAAGTGAATTGTTCATTATATAGATAGCCATCATGGTCCCAC
326 CTGATTTTAATTGGTCTAAATTTTAAGTGAATTGTTCATTATATAGATAGCCATCATGGTCCCAC
55858 CACCTGGTTGCAAAAACATTGGCTCCACAACACAACAAACCAAAAGAAAATTACATTTGACTAAT
391 CACCTGGTTGCAAAAACATTGGCTCCACAACACAACAAACCAAAAGAAAATTACATTTGACTAAT
55923 GCTTCAGTAGTGATGTGTTAGTGGCATGATCATCTTCCACAAAAAAAATTTGTTAGTCAAGAACT
456 GCTTCAGTAGTGATGTGTTAGTGGCATGATCATCTTCCACAAAAAAAATTTGTTAGTCAAGAACT
55988 GAAACTAAACCACAACAAGGAACTAAAGAGTCCTATTCCACATATAAATCCTACAATACTAACTA
521 GAAACTAAACCACAACAAGGAACTAAAGAGTCCTATTCCACATATAAATCCTACAATACTAACTA
56053 TATTGACATAAAAATATTACAAGCGGATTATGCACCTTCATATTCAAAATCATGTGCTAGTACAG
586 TATTGACATAAAAATATTACAAGCGGATTATGCACCTTCATATTCAAAATCATGTGCTAGTACAG
56118 CATGAGCAGCAATATGCCGTCTCAGCCATTTCCTAGATACTCAATATAAATGAGACAGTAACAGA
651 CATGAGCAGCAATATGCCGTCTCAGCCATTTCCTAGATACTCAATATAAATGAGACAGTAACAGA
56183 ACATGTTGCTTACATGATACAGTGGAACACCACAAATACTATAAAGCACAACCGTCATCTCAGGG
716 ACATGTTGCTTACATGATACAGTGGAACACCACAAATACTATAAAGCACAACCGTCATCTCAGGG
*
56248 GTTGATACAGTACATGTCCACATGATAACTTTGGATTCAGTTGATTGTGGCTTCTCCAGAGTATA
781 GCTGATACAGTACATGTCCACATGATAACTTTGGATTCAGTTGATTGTGGCTTCTCCAGAGTATA
56313 AGTTTCCTCTTGAAGAACCATTCCCTTCTTTTTGGAGGACTGCAACCTCAACCATGGCTTCAATC
846 AGTTTCCTCTTGAAGAACCATTCCCTTCTTTTTGGAGGACTGCAACCTCAACCATGGCTTCAATC
56378 TACTCATTATAATATTGCATTGGGTCCCTCCAAGCTTAACATCAA
911 TACTCATTATAATATTGCATTGGGTCCCTCCAAGCTTAACATCAA
56423 C
1 C
56424 TTCTACTCTA
Statistics
Matches: 953, Mismatches: 2, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
954 773 0.81
955 180 0.19
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.28
Consensus pattern (955 bp):
CCTATACTAGAAATGTTGTTAGCAAACAGATGTAATGACTATGAGCACCCCTGCATTAGAAATCA
AAGTCAAAGGTGTCTTAGTCATCGTGTTATACCAAAAGTCAAACATAAACTAATAGAGGCATACA
AAGTGAAGAAAAGAAAAGAAAAATGAACGTACTCCAAAAGGAATATTATGTTACTCGAAATGGCA
AATAAATTACAGATGTGAGTGACTGCAGAAGATCCTATACTGATATATAGAAGAAAAATACTTAT
TTCAGTAAAACCATCATAAAGATACAAGCTATTAGTTAAAGTAGGATTCTTCTTTTAGCAATATG
CTGATTTTAATTGGTCTAAATTTTAAGTGAATTGTTCATTATATAGATAGCCATCATGGTCCCAC
CACCTGGTTGCAAAAACATTGGCTCCACAACACAACAAACCAAAAGAAAATTACATTTGACTAAT
GCTTCAGTAGTGATGTGTTAGTGGCATGATCATCTTCCACAAAAAAAATTTGTTAGTCAAGAACT
GAAACTAAACCACAACAAGGAACTAAAGAGTCCTATTCCACATATAAATCCTACAATACTAACTA
TATTGACATAAAAATATTACAAGCGGATTATGCACCTTCATATTCAAAATCATGTGCTAGTACAG
CATGAGCAGCAATATGCCGTCTCAGCCATTTCCTAGATACTCAATATAAATGAGACAGTAACAGA
ACATGTTGCTTACATGATACAGTGGAACACCACAAATACTATAAAGCACAACCGTCATCTCAGGG
GCTGATACAGTACATGTCCACATGATAACTTTGGATTCAGTTGATTGTGGCTTCTCCAGAGTATA
AGTTTCCTCTTGAAGAACCATTCCCTTCTTTTTGGAGGACTGCAACCTCAACCATGGCTTCAATC
TACTCATTATAATATTGCATTGGGTCCCTCCAAGCTTAACATCAA
Found at i:59390 original size:2 final size:2
Alignment explanation
Indices: 59383--59411 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
59373 GGTCCATAAC
59383 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
59412 TATTCCAGTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:63095 original size:15 final size:15
Alignment explanation
Indices: 63075--63155 Score: 54
Period size: 15 Copynumber: 4.9 Consensus size: 15
63065 AATATTAGTG
63075 AATAAAAATATAAAT
1 AATAAAAATATAAAT
* *
63090 AATAAATATATGAAT
1 AATAAAAATATAAAT
*
63105 AAATAAATAAATAAAATACT
1 -AAT-AA-AAATATAA-A-T
*
63125 AATTTAAACATATAAAT
1 AA--TAAAAATATAAAT
*
63142 GATAAAAATATAAA
1 AATAAAAATATAAA
63156 AAATGACCAA
Statistics
Matches: 50, Mismatches: 9, Indels: 14
0.68 0.12 0.19
Matches are distributed among these distances:
15 24 0.48
16 3 0.06
17 4 0.08
18 6 0.12
19 9 0.18
20 3 0.06
21 1 0.02
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.28
Consensus pattern (15 bp):
AATAAAAATATAAAT
Found at i:63107 original size:27 final size:29
Alignment explanation
Indices: 63062--63118 Score: 84
Period size: 27 Copynumber: 2.0 Consensus size: 29
63052 TGCATTTCAT
63062 ATAAATATTAGTGAATAAA-AATATAAATA
1 ATAAATATTAGTGAATAAATAA-ATAAATA
63091 ATAAATA-TA-TGAATAAATAAATAAATA
1 ATAAATATTAGTGAATAAATAAATAAATA
63118 A
1 A
63119 AATACTAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
27 16 0.59
28 4 0.15
29 7 0.26
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (29 bp):
ATAAATATTAGTGAATAAATAAATAAATA
Found at i:66613 original size:20 final size:20
Alignment explanation
Indices: 66547--66617 Score: 72
Period size: 24 Copynumber: 3.4 Consensus size: 20
66537 TGATTTGTGT
*
66547 ATCGATGCA-TGTGTAATGC
1 ATCGATGCACTGTGGAATGC
*
66566 ATCGATGCACATGTTAAAGAATGC
1 ATCGATGCAC-TG-T--GGAATGC
*
66590 ATCGATGCACTGTGGAATGT
1 ATCGATGCACTGTGGAATGC
66610 ATCGATGC
1 ATCGATGC
66618 TCGATGCACT
Statistics
Matches: 43, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
19 9 0.21
20 13 0.30
21 2 0.05
22 2 0.05
23 2 0.05
24 15 0.35
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (20 bp):
ATCGATGCACTGTGGAATGC
Found at i:67497 original size:2 final size:2
Alignment explanation
Indices: 67492--67608 Score: 225
Period size: 2 Copynumber: 58.5 Consensus size: 2
67482 TATATATATA
67492 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
67534 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
*
67576 TG TG TG TG TG TG TG TG TA TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
67609 TTTGTGACAT
Statistics
Matches: 113, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
2 113 1.00
ACGTcount: A:0.01, C:0.00, G:0.49, T:0.50
Consensus pattern (2 bp):
TG
Found at i:68867 original size:21 final size:21
Alignment explanation
Indices: 68843--68882 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
68833 TGGGGTTACC
68843 AAAGTTATAAGGATCCAATCT
1 AAAGTTATAAGGATCCAATCT
* *
68864 AAAGTTATGAGGATGCAAT
1 AAAGTTATAAGGATCCAAT
68883 GAAGATTGGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.42, C:0.10, G:0.20, T:0.28
Consensus pattern (21 bp):
AAAGTTATAAGGATCCAATCT
Found at i:70932 original size:64 final size:64
Alignment explanation
Indices: 70862--71086 Score: 219
Period size: 64 Copynumber: 3.5 Consensus size: 64
70852 TTGTATGAAT
* **
70862 GTGCATCGATGCATTGGTAGTGCATCGATGCA-CTCTTTTAA-AATAAAGACATCGAATGCAATT
1 GTGCATCGATGCATAGGTAGTGCATCGATGCATC-CCATTAATAATAAA-ACATCGAATGCAA-T
70925 CA
63 CA
* * *
70927 -TGCATCGATGCATAAGTAGTGCATCGATGCATCCCATTAATAGTGAAACATCGAATGCAATCA
1 GTGCATCGATGCATAGGTAGTGCATCGATGCATCCCATTAATAATAAAACATCGAATGCAATCA
** ** * ** *
70990 GTGCATCGATGCATAAGG-AGTGCATCGATGCATCCCAGCAATAATACTACATCGAATACCTTTT
1 GTGCATCGATGCAT-AGGTAGTGCATCGATGCATCCCATTAATAATAAAACATCGAAT-GCAATC
71054 A
64 A
*
71055 -TGCACCGATGCATCA-GTAGTGCATCGATGCAT
1 GTGCATCGATGCAT-AGGTAGTGCATCGATGCAT
71087 ACCTTCATTA
Statistics
Matches: 135, Mismatches: 19, Indels: 13
0.81 0.11 0.08
Matches are distributed among these distances:
63 4 0.03
64 121 0.90
65 10 0.07
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (64 bp):
GTGCATCGATGCATAGGTAGTGCATCGATGCATCCCATTAATAATAAAACATCGAATGCAATCA
Found at i:77955 original size:64 final size:64
Alignment explanation
Indices: 77885--78109 Score: 208
Period size: 64 Copynumber: 3.5 Consensus size: 64
77875 TTATATGAAT
* **
77885 GTGCATCGATGCATTGGTAGTGCATCGATGCA-CTCTTTTAA-AATAAAGACATCGAATGCAATT
1 GTGCATCGATGCATAGGTAGTGCATCGATGCATC-CCATTAATAATAAA-ACATCGAATGCAA-T
77948 C-
63 CG
* * * *
77949 GTGCATCGATGCATAAGTAGTGCATCGATGCATCCCATTAATAGTGAAACATCGAATTCAATCG
1 GTGCATCGATGCATAGGTAGTGCATCGATGCATCCCATTAATAATAAAACATCGAATGCAATCG
** ** * ** **
78013 GTGCATCGATGCATAAGG-AGTGCATCGATGCATCCCAGCAATAATACTACATCGAATACCTTTT
1 GTGCATCGATGCAT-AGGTAGTGCATCGATGCATCCCATTAATAATAAAACATCGAATGCAATCG
* *
78077 ATGCACCGATGCATCA-GTAGTGCATCGATGCAT
1 GTGCATCGATGCAT-AGGTAGTGCATCGATGCAT
78110 ACCTTCATTA
Statistics
Matches: 134, Mismatches: 22, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
63 3 0.02
64 124 0.93
65 7 0.05
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.27
Consensus pattern (64 bp):
GTGCATCGATGCATAGGTAGTGCATCGATGCATCCCATTAATAATAAAACATCGAATGCAATCG
Found at i:78437 original size:12 final size:12
Alignment explanation
Indices: 78419--78454 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
78409 TATATATGTT
78419 CATGTGATATGA
1 CATGTGATATGA
*
78431 TATGTGATATGA
1 CATGTGATATGA
*
78443 CCTGTGATATGA
1 CATGTGATATGA
78455 GAACATGATA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.31, C:0.08, G:0.25, T:0.36
Consensus pattern (12 bp):
CATGTGATATGA
Found at i:78617 original size:15 final size:15
Alignment explanation
Indices: 78599--78661 Score: 108
Period size: 15 Copynumber: 4.2 Consensus size: 15
78589 GAGGGAATAA
*
78599 TAGTCCTTCGGAACG
1 TAGTCCTTCGGGACG
78614 TAGTCCTTCGGGACG
1 TAGTCCTTCGGGACG
78629 TAGTCCTTCGGGACG
1 TAGTCCTTCGGGACG
*
78644 TAGTCCTTCGGGATG
1 TAGTCCTTCGGGACG
78659 TAG
1 TAG
78662 GAGTCCTACG
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 46 1.00
ACGTcount: A:0.16, C:0.24, G:0.32, T:0.29
Consensus pattern (15 bp):
TAGTCCTTCGGGACG
Found at i:79603 original size:64 final size:67
Alignment explanation
Indices: 79494--79621 Score: 192
Period size: 64 Copynumber: 2.0 Consensus size: 67
79484 ATTTTCATCT
*
79494 TTTAATGGAGGTATGCATCGATGCACTGCACCATGAATCGATGCATAAATCCTATTCGATGTTTG
1 TTTAATGGAGGTATGCATCGATACACTGCACCATGAATCGATGCATAAATCCTATTCGATGTTTG
79559 TA
66 TA
* *
79561 TTTAATGG-GG-ATGCATCGATACACT-C-CTTATGCATCGATGCATAAATCCTATTCGATGTTT
1 TTTAATGGAGGTATGCATCGATACACTGCAC-CATGAATCGATGCATAAATCCTATTCGATGTTT
79622 TCTTTTTAAA
Statistics
Matches: 57, Mismatches: 3, Indels: 5
0.88 0.05 0.08
Matches are distributed among these distances:
63 1 0.02
64 32 0.56
65 14 0.25
66 2 0.04
67 8 0.14
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.34
Consensus pattern (67 bp):
TTTAATGGAGGTATGCATCGATACACTGCACCATGAATCGATGCATAAATCCTATTCGATGTTTG
TA
Found at i:79639 original size:64 final size:63
Alignment explanation
Indices: 79506--79666 Score: 171
Period size: 64 Copynumber: 2.5 Consensus size: 63
79496 TAATGGAGGT
* * * * * *
79506 ATGCATCGATGCACTGCACCATGAATCGATGCATAAATCCTATTCGATGTTTGTATTTAATGGGG
1 ATGCATCGATACACTCCA-TATGCATCGATGCATAAATCCTATTCGATGTTTCTATTTAAT-GGA
* * *
79571 ATGCATCGATACACTCCTTATGCATCGATGCATAAATCCTATTCGATGTTTTCTTTTTAAAT-TA
1 ATGCATCGATACACTCCATATGCATCGATGCATAAATCCTATTCGATG-TTTCTATTT-AATGGA
* * *
79635 ATGCATCGATGCACTGCATGTGCATCGATGCA
1 ATGCATCGATACACTCCATATGCATCGATGCA
79667 CCTTAAACAA
Statistics
Matches: 81, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
64 56 0.69
65 22 0.27
66 3 0.04
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.34
Consensus pattern (63 bp):
ATGCATCGATACACTCCATATGCATCGATGCATAAATCCTATTCGATGTTTCTATTTAATGGA
Found at i:85484 original size:20 final size:21
Alignment explanation
Indices: 85446--85484 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
85436 TGTGATTCCA
*
85446 TTGCTTCAGATTCATGAACTC
1 TTGCTTCAGATTCACGAACTC
*
85467 TTGCTTCA-TTTCACGAAC
1 TTGCTTCAGATTCACGAAC
85485 AAATTGATCT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.23, C:0.26, G:0.13, T:0.38
Consensus pattern (21 bp):
TTGCTTCAGATTCACGAACTC
Found at i:88428 original size:64 final size:67
Alignment explanation
Indices: 88320--88447 Score: 192
Period size: 64 Copynumber: 2.0 Consensus size: 67
88310 ATTTTCATCT
88320 TTTAATGGAGGTATGCATCGATGCACTACACCATGCATCAATGCATAAATCCTATTCGATGTTTG
1 TTTAATGGAGGTATGCATCGATGCACTACACCATGCATCAATGCATAAATCCTATTCGATGTTTG
88385 TA
66 TA
* * *
88387 TTTAATGG-GG-ATGTATCGATGCACT-C-CTTATGCATCGATGCATAAATCCTATTCGATGTTT
1 TTTAATGGAGGTATGCATCGATGCACTACAC-CATGCATCAATGCATAAATCCTATTCGATGTTT
88448 TCATTTTAAA
Statistics
Matches: 57, Mismatches: 3, Indels: 5
0.88 0.05 0.08
Matches are distributed among these distances:
63 1 0.02
64 32 0.56
65 14 0.25
66 2 0.04
67 8 0.14
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35
Consensus pattern (67 bp):
TTTAATGGAGGTATGCATCGATGCACTACACCATGCATCAATGCATAAATCCTATTCGATGTTTG
TA
Found at i:88469 original size:64 final size:62
Alignment explanation
Indices: 88332--88492 Score: 173
Period size: 64 Copynumber: 2.5 Consensus size: 62
88322 TAATGGAGGT
* * *
88332 ATGCATCGATGCACTACACCATGCATCAATGCATAAATCCTATTCGATGTTTGTATTTAATGGGG
1 ATGCATCGATGCACT-C-CTATGCATCGATGCATAAATCCTATTCGATGTTTGTATTTAAT-GGA
* *
88397 ATGTATCGATGCACTCCTTATGCATCGATGCATAAATCCTATTCGATGTTT-TCATTTTAAAT-T
1 ATGCATCGATGCACTCC-TATGCATCGATGCATAAATCCTATTCGATGTTTGT-A-TTT-AATGG
88460 A
62 A
* *
88461 ATGCATCGATGCACTGCATGTGCATCGATGCA
1 ATGCATCGATGCACT-CCTATGCATCGATGCA
88493 CCTTAAACAA
Statistics
Matches: 83, Mismatches: 8, Indels: 11
0.81 0.08 0.11
Matches are distributed among these distances:
63 2 0.02
64 60 0.72
65 18 0.22
66 3 0.04
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.34
Consensus pattern (62 bp):
ATGCATCGATGCACTCCTATGCATCGATGCATAAATCCTATTCGATGTTTGTATTTAATGGA
Found at i:93806 original size:2 final size:2
Alignment explanation
Indices: 93799--93851 Score: 56
Period size: 2 Copynumber: 26.5 Consensus size: 2
93789 ATTTAATAAT
* *
93799 TA TA TA TA TA TA TA TA TGA T- TA TA TA TG TG TA TA TA TGA T- TA
1 TA TA TA TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA T-A TA TA
93841 TA TA TA TA TA T
1 TA TA TA TA TA T
93852 TTGCTCCCAT
Statistics
Matches: 45, Mismatches: 2, Indels: 8
0.82 0.04 0.15
Matches are distributed among these distances:
1 2 0.04
2 39 0.87
3 4 0.09
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.51
Consensus pattern (2 bp):
TA
Found at i:93822 original size:20 final size:20
Alignment explanation
Indices: 93797--93851 Score: 92
Period size: 20 Copynumber: 2.8 Consensus size: 20
93787 AAATTTAATA
93797 ATTATATATATATATATATG
1 ATTATATATATATATATATG
* *
93817 ATTATATATGTGTATATATG
1 ATTATATATATATATATATG
93837 ATTATATATATATAT
1 ATTATATATATATAT
93852 TTGCTCCCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.42, C:0.00, G:0.07, T:0.51
Consensus pattern (20 bp):
ATTATATATATATATATATG
Found at i:96905 original size:56 final size:56
Alignment explanation
Indices: 96845--96954 Score: 202
Period size: 56 Copynumber: 2.0 Consensus size: 56
96835 CTAAAATTAA
* *
96845 CAGTTACAAAACCACCACATAACAGTTCAAATCAGAATAAGTTCAAACAAGTGTAG
1 CAGTTACAAAACCACCACATAACAGTTCAAATCAGAATAAATTAAAACAAGTGTAG
96901 CAGTTACAAAACCACCACATAACAGTTCAAATCAGAATAAATTAAAACAAGTGT
1 CAGTTACAAAACCACCACATAACAGTTCAAATCAGAATAAATTAAAACAAGTGT
96955 GCACTCCGCA
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 52 1.00
ACGTcount: A:0.48, C:0.21, G:0.11, T:0.20
Consensus pattern (56 bp):
CAGTTACAAAACCACCACATAACAGTTCAAATCAGAATAAATTAAAACAAGTGTAG
Found at i:97380 original size:47 final size:47
Alignment explanation
Indices: 97326--97421 Score: 192
Period size: 47 Copynumber: 2.0 Consensus size: 47
97316 CCTTCAATAA
97326 GCATATCAAAGTTAAGTCCCTAGCTTCTTGAAGCGGCTAAACTTCAT
1 GCATATCAAAGTTAAGTCCCTAGCTTCTTGAAGCGGCTAAACTTCAT
97373 GCATATCAAAGTTAAGTCCCTAGCTTCTTGAAGCGGCTAAACTTCAT
1 GCATATCAAAGTTAAGTCCCTAGCTTCTTGAAGCGGCTAAACTTCAT
97420 GC
1 GC
97422 TTATATAGGT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 49 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (47 bp):
GCATATCAAAGTTAAGTCCCTAGCTTCTTGAAGCGGCTAAACTTCAT
Found at i:101924 original size:56 final size:56
Alignment explanation
Indices: 101864--101976 Score: 217
Period size: 56 Copynumber: 2.0 Consensus size: 56
101854 AAACTAAAAT
*
101864 TAGCAGTTACAAAACCACCACATAACAGTTCAAATCAGAATAAGTTCAAACAAGTG
1 TAGCAGTTACAAAACCACCACATAACAGTTCAAATCAGAATAAATTCAAACAAGTG
101920 TAGCAGTTACAAAACCACCACATAACAGTTCAAATCAGAATAAATTCAAACAAGTG
1 TAGCAGTTACAAAACCACCACATAACAGTTCAAATCAGAATAAATTCAAACAAGTG
101976 T
1 T
101977 GCACTCCGCA
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 56 1.00
ACGTcount: A:0.47, C:0.21, G:0.12, T:0.20
Consensus pattern (56 bp):
TAGCAGTTACAAAACCACCACATAACAGTTCAAATCAGAATAAATTCAAACAAGTG
Found at i:106254 original size:11 final size:11
Alignment explanation
Indices: 106240--106299 Score: 77
Period size: 11 Copynumber: 5.5 Consensus size: 11
106230 TCTTTCATAA
106240 ATTTAATAATT
1 ATTTAATAATT
*
106251 ATTTAATAATA
1 ATTTAATAATT
*
106262 ATTTAATAA-A
1 ATTTAATAATT
*
106272 ATTTAATGATT
1 ATTTAATAATT
*
106283 ATTTTATAATT
1 ATTTAATAATT
106294 ATTTAA
1 ATTTAA
106300 AACGTTTAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
10 9 0.21
11 33 0.79
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.52
Consensus pattern (11 bp):
ATTTAATAATT
Found at i:106264 original size:22 final size:22
Alignment explanation
Indices: 106239--106299 Score: 79
Period size: 21 Copynumber: 2.8 Consensus size: 22
106229 ATCTTTCATA
106239 AATTTAATAATTATTTAATAAT
1 AATTTAATAATTATTTAATAAT
* *
106261 AATTTAATAA-AATTTAATGAT
1 AATTTAATAATTATTTAATAAT
* *
106282 TATTTTATAATTATTTAA
1 AATTTAATAATTATTTAA
106300 AACGTTTAAT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
21 17 0.52
22 16 0.48
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.51
Consensus pattern (22 bp):
AATTTAATAATTATTTAATAAT
Found at i:106274 original size:32 final size:31
Alignment explanation
Indices: 106238--106322 Score: 107
Period size: 32 Copynumber: 2.7 Consensus size: 31
106228 AATCTTTCAT
*
106238 AAATTTAATAATTATTTAATAATAATTTAATA
1 AAATTTAATAATTATTTTATAATAATTTAA-A
* *
106270 AAATTTAATGATTATTTTATAATTATTTAAA
1 AAATTTAATAATTATTTTATAATAATTTAAA
** *
106301 ACGTTTAATTATTATTTTATAA
1 AAATTTAATAATTATTTTATAA
106323 CCTTTAAAAT
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
31 20 0.43
32 27 0.57
ACGTcount: A:0.46, C:0.01, G:0.02, T:0.51
Consensus pattern (31 bp):
AAATTTAATAATTATTTTATAATAATTTAAA
Found at i:106328 original size:21 final size:20
Alignment explanation
Indices: 106291--106329 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
106281 TTATTTTATA
*
106291 ATTATTTAAAACGTTTAATT
1 ATTATTTAAAACCTTTAATT
*
106311 ATTATTTTATAACCTTTAA
1 ATTA-TTTAAAACCTTTAA
106330 AATTCTAGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.38, C:0.08, G:0.03, T:0.51
Consensus pattern (20 bp):
ATTATTTAAAACCTTTAATT
Found at i:106745 original size:16 final size:16
Alignment explanation
Indices: 106721--106759 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
106711 AATTAATACA
*
106721 TTCATCTCACCTTCTT
1 TTCAGCTCACCTTCTT
106737 TTCAGCTCACCTTCTT
1 TTCAGCTCACCTTCTT
106753 TTCAGCT
1 TTCAGCT
106760 TACCAAAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.13, C:0.36, G:0.05, T:0.46
Consensus pattern (16 bp):
TTCAGCTCACCTTCTT
Found at i:107407 original size:16 final size:17
Alignment explanation
Indices: 107373--107418 Score: 58
Period size: 16 Copynumber: 2.7 Consensus size: 17
107363 TTCAATATTT
* *
107373 TAATAATATTATTATTA
1 TAATAATATAATTAATA
107390 TAATAA-ATAATTAATA
1 TAATAATATAATTAATA
107406 TAATAATCATAAT
1 TAATAAT-ATAAT
107419 ATTTTATTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 14 0.56
17 6 0.24
18 5 0.20
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.43
Consensus pattern (17 bp):
TAATAATATAATTAATA
Found at i:107455 original size:39 final size:39
Alignment explanation
Indices: 107335--107458 Score: 98
Period size: 39 Copynumber: 3.2 Consensus size: 39
107325 TCCTTAAAAT
* * *
107335 ATAATATTTTTATTTA-AATATTATA-AGTTTCAATATTTTA
1 ATAATA-TTTTATTTATAAAATTATATA-TAT-AATATTTTC
* *
107375 ATAATATTATTA-TTATAATAAATA-ATTAATATAATA--ATC
1 ATAATATT-TTATTTATAA-AATTATA-T-ATATAATATTTTC
107414 ATAATATTTTATTTATAAAATTATATATATAATATTTTC
1 ATAATATTTTATTTATAAAATTATATATATAATATTTTC
107453 ATAATA
1 ATAATA
107459 ATATTGACAT
Statistics
Matches: 67, Mismatches: 7, Indels: 21
0.71 0.07 0.22
Matches are distributed among these distances:
37 8 0.12
38 8 0.12
39 29 0.43
40 12 0.18
41 7 0.10
42 2 0.03
43 1 0.01
ACGTcount: A:0.47, C:0.02, G:0.01, T:0.50
Consensus pattern (39 bp):
ATAATATTTTATTTATAAAATTATATATATAATATTTTC
Found at i:107459 original size:28 final size:29
Alignment explanation
Indices: 107414--107478 Score: 71
Period size: 28 Copynumber: 2.3 Consensus size: 29
107404 TATAATAATC
* * *
107414 ATAATATTTTATTTATAAAATT-ATATAT
1 ATAATATTTTATTAATAAAATTGACATAA
*
107442 ATAATATTTTCA-TAATAATATTGACATAA
1 ATAATATTTT-ATTAATAAAATTGACATAA
107471 ATAATATT
1 ATAATATT
107479 AAATAAATTA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
28 18 0.58
29 13 0.42
ACGTcount: A:0.48, C:0.03, G:0.02, T:0.48
Consensus pattern (29 bp):
ATAATATTTTATTAATAAAATTGACATAA
Found at i:107502 original size:78 final size:79
Alignment explanation
Indices: 107334--107502 Score: 181
Period size: 78 Copynumber: 2.2 Consensus size: 79
107324 CTCCTTAAAA
* * * *
107334 TATAATATTTTTATTTAAATATTATAAGTTTCAATATTTTAATAATATTATTATTATAATAAATA
1 TATAATATTTTTATTTAAAAATTATAAGTATCAATATTTTAATAATAATATTAATATAATAAATA
107399 ATTAATATAATAAT
66 ATTAATATAATAAT
* *
107413 CATAATA-TTTTATTTATAAAATTATATA-TAT-AATATTTTCATAATAATATTGACATA-AAT-
1 TATAATATTTTTATTTA-AAAATTATA-AGTATCAATATTTTAATAATAATATT-A-ATATAATA
*
107473 AAT-ATTAA-ATAAATTAT
62 AATAATTAATAT-AATAAT
107490 TATAATATTTTTA
1 TATAATATTTTTA
107503 AAAAAAATAT
Statistics
Matches: 76, Mismatches: 8, Indels: 13
0.78 0.08 0.13
Matches are distributed among these distances:
76 2 0.03
77 16 0.21
78 35 0.46
79 20 0.26
80 3 0.04
ACGTcount: A:0.47, C:0.02, G:0.01, T:0.49
Consensus pattern (79 bp):
TATAATATTTTTATTTAAAAATTATAAGTATCAATATTTTAATAATAATATTAATATAATAAATA
ATTAATATAATAAT
Found at i:107503 original size:23 final size:22
Alignment explanation
Indices: 107477--107531 Score: 74
Period size: 23 Copynumber: 2.5 Consensus size: 22
107467 ATAAATAATA
107477 TTAAATAAATTATTATAATATTT
1 TTAAATAAATTATTATAATA-TT
* * *
107500 TTAAAAAAAATATTATTATATT
1 TTAAATAAATTATTATAATATT
107522 TTAAATAAAT
1 TTAAATAAAT
107532 AATATTATTT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
22 10 0.37
23 17 0.63
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (22 bp):
TTAAATAAATTATTATAATATT
Found at i:107537 original size:21 final size:22
Alignment explanation
Indices: 107477--107539 Score: 74
Period size: 21 Copynumber: 2.8 Consensus size: 22
107467 ATAAATAATA
*
107477 TTAAATAAATTATTATAATATTT
1 TTAAATAAA-TATTATTATATTT
*
107500 TTAAAAAAAATATTATTATA-TT
1 TT-AAATAAATATTATTATATTT
*
107522 TTAAATAAATAATATTAT
1 TTAAATAAATATTATTAT
107540 TTATTGTACA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
21 14 0.40
22 4 0.11
23 11 0.31
24 6 0.17
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
TTAAATAAATATTATTATATTT
Found at i:107544 original size:23 final size:23
Alignment explanation
Indices: 107477--107544 Score: 72
Period size: 23 Copynumber: 3.0 Consensus size: 23
107467 ATAAATAATA
*
107477 TTAAATAAAT--TATTATAATATTT
1 TTAAATAAATAATATTAT-TTA-TT
107500 TTAAA-AAA-AATATTATTATATT
1 TTAAATAAATAATATTATT-TATT
107522 TTAAATAAATAATATTATTTATT
1 TTAAATAAATAATATTATTTATT
107545 GTACATGATG
Statistics
Matches: 39, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
22 10 0.26
23 20 0.51
24 9 0.23
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (23 bp):
TTAAATAAATAATATTATTTATT
Found at i:116098 original size:21 final size:21
Alignment explanation
Indices: 116072--116208 Score: 190
Period size: 21 Copynumber: 6.6 Consensus size: 21
116062 GTTTCCAGAT
*
116072 TCGCAACGCGAACTTCGACTA
1 TCGCAATGCGAACTTCGACTA
116093 TCGCAATGCGAACTTCGACTA
1 TCGCAATGCGAACTTCGACTA
*
116114 TCGCAATGCAAACTTCGACTA
1 TCGCAATGCGAACTTCGACTA
*
116135 TCGCAATGCGAACTTGGACTA
1 TCGCAATGCGAACTTCGACTA
*
116156 TCGCAATGCGAA-TAT-GTA-AA
1 TCGCAATGCGAACT-TCG-ACTA
*
116176 TCGCAATGCGAACTTGGACTA
1 TCGCAATGCGAACTTCGACTA
116197 TCGCAATGCGAA
1 TCGCAATGCGAA
116209 TATATAAATC
Statistics
Matches: 105, Mismatches: 6, Indels: 10
0.87 0.05 0.08
Matches are distributed among these distances:
20 17 0.16
21 88 0.84
ACGTcount: A:0.31, C:0.26, G:0.20, T:0.23
Consensus pattern (21 bp):
TCGCAATGCGAACTTCGACTA
Found at i:116180 original size:20 final size:20
Alignment explanation
Indices: 116155--116227 Score: 94
Period size: 20 Copynumber: 3.6 Consensus size: 20
116145 AACTTGGACT
116155 ATCGCAATGCGAATATGTAA
1 ATCGCAATGCGAATATGTAA
* *
116175 ATCGCAATGCGAACT-TGGACT
1 ATCGCAATGCGAA-TATGTA-A
*
116196 ATCGCAATGCGAATATATAA
1 ATCGCAATGCGAATATGTAA
116216 ATCGCAATGCGA
1 ATCGCAATGCGA
116228 TAGTCCAAGT
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
20 29 0.64
21 16 0.36
ACGTcount: A:0.37, C:0.19, G:0.21, T:0.23
Consensus pattern (20 bp):
ATCGCAATGCGAATATGTAA
Found at i:116191 original size:41 final size:41
Alignment explanation
Indices: 116092--116227 Score: 195
Period size: 41 Copynumber: 3.3 Consensus size: 41
116082 AACTTCGACT
* * *
116092 ATCGCAATGCGAACTTCGACTATCGCAATGCAAACT-TCG-ACT
1 ATCGCAATGCGAACTTGGACTATCGCAATGCGAA-TAT-GTA-A
116134 ATCGCAATGCGAACTTGGACTATCGCAATGCGAATATGTAA
1 ATCGCAATGCGAACTTGGACTATCGCAATGCGAATATGTAA
*
116175 ATCGCAATGCGAACTTGGACTATCGCAATGCGAATATATAA
1 ATCGCAATGCGAACTTGGACTATCGCAATGCGAATATGTAA
116216 ATCGCAATGCGA
1 ATCGCAATGCGA
116228 TAGTCCAAGT
Statistics
Matches: 88, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
41 54 0.61
42 34 0.39
ACGTcount: A:0.34, C:0.23, G:0.20, T:0.24
Consensus pattern (41 bp):
ATCGCAATGCGAACTTGGACTATCGCAATGCGAATATGTAA
Found at i:116242 original size:62 final size:62
Alignment explanation
Indices: 116072--116227 Score: 167
Period size: 62 Copynumber: 2.5 Consensus size: 62
116062 GTTTCCAGAT
* * * * *
116072 TCGCAACGCGAACTTCGACTATCGCAATGCGAACT-TCG-ACTATCGCAATGCAAACTTCGACTA
1 TCGCAATGCGAACTTAGACAATCGCAATGCGAA-TAT-GTA-AATCGCAATGCGAACTTCGACTA
* * *
116135 TCGCAATGCGAACTTGGACTATCGCAATGCGAATATGTAAATCGCAATGCGAACTTGGACTA
1 TCGCAATGCGAACTTAGACAATCGCAATGCGAATATGTAAATCGCAATGCGAACTTCGACTA
*
116197 TCGCAATGCGAA-TATATA-AATCGCAATGCGA
1 TCGCAATGCGAACT-TAGACAATCGCAATGCGA
116228 TAGTCCAAGT
Statistics
Matches: 82, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
61 13 0.16
62 36 0.44
63 33 0.40
ACGTcount: A:0.33, C:0.24, G:0.20, T:0.23
Consensus pattern (62 bp):
TCGCAATGCGAACTTAGACAATCGCAATGCGAATATGTAAATCGCAATGCGAACTTCGACTA
Found at i:116247 original size:21 final size:21
Alignment explanation
Indices: 116217--116270 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
116207 AATATATAAA
*
116217 TCGCAATGCGATAGTCCAAGT
1 TCGCATTGCGATAGTCCAAGT
*
116238 TCGCATTGCGATAGTCGAAGT
1 TCGCATTGCGATAGTCCAAGT
*
116259 TTGCATTGCGAT
1 TCGCATTGCGAT
116271 TTATTCCAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (21 bp):
TCGCATTGCGATAGTCCAAGT
Found at i:116452 original size:93 final size:93
Alignment explanation
Indices: 116293--116475 Score: 366
Period size: 93 Copynumber: 2.0 Consensus size: 93
116283 CGTTGCGATA
116293 GTTCAAAATCGCAACGACTGGTGGTATTGCATTTGTTTCTTAAGAATTTTCTCTAAAAAGATAGT
1 GTTCAAAATCGCAACGACTGGTGGTATTGCATTTGTTTCTTAAGAATTTTCTCTAAAAAGATAGT
116358 ATTCGCGCGGACGTGTCGAAGACACGTG
66 ATTCGCGCGGACGTGTCGAAGACACGTG
116386 GTTCAAAATCGCAACGACTGGTGGTATTGCATTTGTTTCTTAAGAATTTTCTCTAAAAAGATAGT
1 GTTCAAAATCGCAACGACTGGTGGTATTGCATTTGTTTCTTAAGAATTTTCTCTAAAAAGATAGT
116451 ATTCGCGCGGACGTGTCGAAGACAC
66 ATTCGCGCGGACGTGTCGAAGACAC
116476 ATATTACCAC
Statistics
Matches: 90, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
93 90 1.00
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.31
Consensus pattern (93 bp):
GTTCAAAATCGCAACGACTGGTGGTATTGCATTTGTTTCTTAAGAATTTTCTCTAAAAAGATAGT
ATTCGCGCGGACGTGTCGAAGACACGTG
Found at i:117157 original size:21 final size:21
Alignment explanation
Indices: 117105--117207 Score: 129
Period size: 21 Copynumber: 4.9 Consensus size: 21
117095 CGTTGCGATT
*
117105 TTGGACTATCGCAA--CGAAT
1 TTGGACTATCGCAATGCGAAC
* *
117124 TTGGAATAAATCGCAACGCGAAC
1 TTGGACT--ATCGCAATGCGAAC
117147 TTGGACTATCGCAATGCGAAC
1 TTGGACTATCGCAATGCGAAC
117168 TTGGACTATCGCAATGCGAAC
1 TTGGACTATCGCAATGCGAAC
* *
117189 TTCGACTATCGCATTGCGA
1 TTGGACTATCGCAATGCGA
117208 TTTACATATT
Statistics
Matches: 74, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
19 6 0.08
21 58 0.78
23 10 0.14
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.24
Consensus pattern (21 bp):
TTGGACTATCGCAATGCGAAC
Found at i:117268 original size:21 final size:21
Alignment explanation
Indices: 117242--117402 Score: 177
Period size: 21 Copynumber: 7.7 Consensus size: 21
117232 CCAAGTTCGC
*
117242 AAGTTCGCATTGCAATAGTCG
1 AAGTTCGCATTGCGATAGTCG
* *
117263 AAGTTCGCGTTGCGATAGTCC
1 AAGTTCGCATTGCGATAGTCG
*
117284 AAGTTCGTATTGCGATAGTCG
1 AAGTTCGCATTGCGATAGTCG
* *
117305 -ACTATCGCATTGCGAT-TTAC-
1 AAGT-TCGCATTGCGATAGT-CG
* *
117325 ATA-TTCGCATTGTGATAGTCC
1 A-AGTTCGCATTGCGATAGTCG
*
117346 AAGTTCGCATTGCGATAGTCT
1 AAGTTCGCATTGCGATAGTCG
117367 AAGTTCGCATTGCGATAGTCG
1 AAGTTCGCATTGCGATAGTCG
*
117388 AAGTTCGCGTTGCGA
1 AAGTTCGCATTGCGA
117403 ATCTGGAAAC
Statistics
Matches: 118, Mismatches: 15, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
20 16 0.14
21 101 0.86
22 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.32
Consensus pattern (21 bp):
AAGTTCGCATTGCGATAGTCG
Found at i:117302 original size:42 final size:42
Alignment explanation
Indices: 117241--117402 Score: 195
Period size: 42 Copynumber: 3.9 Consensus size: 42
117231 TCCAAGTTCG
* *
117241 CAAGTTCGCATTGCAATAGTCGAAGTTCGCGTTGCGATAGTC
1 CAAGTTCGCATTGCGATAGTCGAAGTTCGCATTGCGATAGTC
* * * *
117283 CAAGTTCGTATTGCGATAGTCG-ACTATCGCATTGCGAT-TTA
1 CAAGTTCGCATTGCGATAGTCGAAGT-TCGCATTGCGATAGTC
* *
117324 CATA-TTCGCATTGTGATAGTCCAAGTTCGCATTGCGATAGTC
1 CA-AGTTCGCATTGCGATAGTCGAAGTTCGCATTGCGATAGTC
* *
117366 TAAGTTCGCATTGCGATAGTCGAAGTTCGCGTTGCGA
1 CAAGTTCGCATTGCGATAGTCGAAGTTCGCATTGCGA
117403 ATCTGGAAAC
Statistics
Matches: 99, Mismatches: 16, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
41 33 0.33
42 66 0.67
ACGTcount: A:0.23, C:0.20, G:0.25, T:0.31
Consensus pattern (42 bp):
CAAGTTCGCATTGCGATAGTCGAAGTTCGCATTGCGATAGTC
Found at i:117344 original size:62 final size:62
Alignment explanation
Indices: 117266--117382 Score: 173
Period size: 62 Copynumber: 1.9 Consensus size: 62
117256 ATAGTCGAAG
* * *
117266 TTCGCGTTGCGATAGTCCAAGTTCGTATTGCGATAGTC-GACTATCGCATTGCGATTTACATA
1 TTCGCATTGCGATAGTCCAAGTTCGCATTGCGATAGTCTAACT-TCGCATTGCGATTTACATA
* *
117328 TTCGCATTGTGATAGTCCAAGTTCGCATTGCGATAGTCTAAGTTCGCATTGCGAT
1 TTCGCATTGCGATAGTCCAAGTTCGCATTGCGATAGTCTAACTTCGCATTGCGAT
117383 AGTCGAAGTT
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
62 47 0.96
63 2 0.04
ACGTcount: A:0.22, C:0.21, G:0.23, T:0.34
Consensus pattern (62 bp):
TTCGCATTGCGATAGTCCAAGTTCGCATTGCGATAGTCTAACTTCGCATTGCGATTTACATA
Found at i:120682 original size:2 final size:2
Alignment explanation
Indices: 120675--120741 Score: 134
Period size: 2 Copynumber: 33.5 Consensus size: 2
120665 ACGTACAAAT
120675 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
120717 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
120742 TAATAGAAGT
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 65 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:121342 original size:20 final size:20
Alignment explanation
Indices: 121313--121356 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
121303 TTATAAAATA
*
121313 TATTTTTATTATTATATTTT
1 TATTTGTATTATTATATTTT
*
121333 TATTTGTATTTTTATATTTT
1 TATTTGTATTATTATATTTT
121353 TATT
1 TATT
121357 ATAATTTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.75
Consensus pattern (20 bp):
TATTTGTATTATTATATTTT
Found at i:121344 original size:12 final size:13
Alignment explanation
Indices: 121311--121350 Score: 55
Period size: 12 Copynumber: 3.1 Consensus size: 13
121301 TATTATAAAA
121311 TATATTTTTATTAT
1 TATATTTTTA-TAT
121325 TATATTTTTAT-T
1 TATATTTTTATAT
*
121337 TGTATTTTTATAT
1 TATATTTTTATAT
121350 T
1 T
121351 TTTATTATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
12 11 0.46
13 3 0.12
14 10 0.42
ACGTcount: A:0.25, C:0.00, G:0.03, T:0.72
Consensus pattern (13 bp):
TATATTTTTATAT
Found at i:121399 original size:29 final size:30
Alignment explanation
Indices: 121345--121428 Score: 77
Period size: 32 Copynumber: 2.9 Consensus size: 30
121335 TTTGTATTTT
*
121345 TATATTTT-TAT-T-ATAATTTAAATTG-A
1 TATATTTTATATATAATAATTTTAATTGAA
*
121371 TATATTTTATATATAATAATTTTATTTGAA
1 TATATTTTATATATAATAATTTTAATTGAA
* * *
121401 TTTATTTATAATATATATTATTTTTAAT
1 TATATTT-T-ATATATAATAATTTTAAT
121429 GATTAAATTA
Statistics
Matches: 46, Mismatches: 6, Indels: 6
0.79 0.10 0.10
Matches are distributed among these distances:
26 8 0.17
27 3 0.07
28 1 0.02
29 11 0.24
30 7 0.15
31 1 0.02
32 15 0.33
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (30 bp):
TATATTTTATATATAATAATTTTAATTGAA
Found at i:134606 original size:29 final size:29
Alignment explanation
Indices: 134559--134617 Score: 102
Period size: 29 Copynumber: 2.0 Consensus size: 29
134549 ATTTTCTCCT
134559 AACTAAATTGATGATAGCAATGACATCAA
1 AACTAAATTGATGATAGCAATGACATCAA
134588 AACTAAATTGATG-TAAGCAATGACATCAA
1 AACTAAATTGATGAT-AGCAATGACATCAA
134617 A
1 A
134618 TTAATTTAGG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
28 1 0.03
29 28 0.97
ACGTcount: A:0.49, C:0.14, G:0.14, T:0.24
Consensus pattern (29 bp):
AACTAAATTGATGATAGCAATGACATCAA
Found at i:146332 original size:29 final size:29
Alignment explanation
Indices: 146290--146348 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
146280 ATTTTCACCT
146290 AACTAAATTGATGTAAGCAATGACATCAA
1 AACTAAATTGATGTAAGCAATGACATCAA
146319 AACTAAATTGATGTAAGCAATGACATCAA
1 AACTAAATTGATGTAAGCAATGACATCAA
146348 A
1 A
146349 TTAATTTAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.49, C:0.14, G:0.14, T:0.24
Consensus pattern (29 bp):
AACTAAATTGATGTAAGCAATGACATCAA
Found at i:146991 original size:30 final size:31
Alignment explanation
Indices: 146957--147015 Score: 102
Period size: 30 Copynumber: 1.9 Consensus size: 31
146947 GACTATCAAG
146957 AACTAGCATAGTTACTAGCAGAG-ACTATAT
1 AACTAGCATAGTTACTAGCAGAGTACTATAT
*
146987 AACTAGTATAGTTACTAGCAGAGTACTAT
1 AACTAGCATAGTTACTAGCAGAGTACTAT
147016 CAAGTAGCAG
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
30 22 0.81
31 5 0.19
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.29
Consensus pattern (31 bp):
AACTAGCATAGTTACTAGCAGAGTACTATAT
Found at i:147408 original size:17 final size:17
Alignment explanation
Indices: 147345--147401 Score: 55
Period size: 17 Copynumber: 3.4 Consensus size: 17
147335 TATTTGCTTA
147345 ATATAT-AAATA-TATAT
1 ATATATGAAATATTA-AT
* *
147361 TTATTTGAAGATATTAAT
1 ATATATGAA-ATATTAAT
*
147379 ATATATGAAATATTAGT
1 ATATATGAAATATTAAT
147396 ATATAT
1 ATATAT
147402 TATATATACA
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
16 4 0.12
17 15 0.45
18 12 0.36
19 2 0.06
ACGTcount: A:0.47, C:0.00, G:0.07, T:0.46
Consensus pattern (17 bp):
ATATATGAAATATTAAT
Found at i:148414 original size:21 final size:21
Alignment explanation
Indices: 148388--148440 Score: 97
Period size: 21 Copynumber: 2.5 Consensus size: 21
148378 ATTTACCGTG
148388 ATTGCGGCCGTCGCGGACGCT
1 ATTGCGGCCGTCGCGGACGCT
*
148409 ATTGCGGTCGTCGCGGACGCT
1 ATTGCGGCCGTCGCGGACGCT
148430 ATTGCGGCCGT
1 ATTGCGGCCGT
148441 TGTGGGTAAC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.09, C:0.30, G:0.38, T:0.23
Consensus pattern (21 bp):
ATTGCGGCCGTCGCGGACGCT
Found at i:149701 original size:20 final size:20
Alignment explanation
Indices: 149673--149711 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
149663 TTTATGTTGT
*
149673 ATCTAGTATTGGGTTCGTGG
1 ATCTAGTATTAGGTTCGTGG
*
149693 ATCTTGTATTAGGTTCGTG
1 ATCTAGTATTAGGTTCGTG
149712 TACCTTGTGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.15, C:0.10, G:0.31, T:0.44
Consensus pattern (20 bp):
ATCTAGTATTAGGTTCGTGG
Found at i:149718 original size:20 final size:20
Alignment explanation
Indices: 149678--149719 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
149668 GTTGTATCTA
* *
149678 GTATTGGGTTCGTGGATCTT
1 GTATTAGGTTCGTGGACCTT
*
149698 GTATTAGGTTCGTGTACCTT
1 GTATTAGGTTCGTGGACCTT
149718 GT
1 GT
149720 GATGCTTATA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.12, C:0.12, G:0.31, T:0.45
Consensus pattern (20 bp):
GTATTAGGTTCGTGGACCTT
Found at i:159935 original size:29 final size:29
Alignment explanation
Indices: 159873--159948 Score: 80
Period size: 29 Copynumber: 2.6 Consensus size: 29
159863 CCCGTTGATC
** ** *
159873 GGTGCTATTCAAGGAATTAATTCGATTTT
1 GGTGCTATTCTGGGAATTAATTCGAAATG
*
159902 TGTGCTATTCTGGGAATTAATTCGAAATG
1 GGTGCTATTCTGGGAATTAATTCGAAATG
* *
159931 GGTGCTATTTTGGTAATT
1 GGTGCTATTCTGGGAATT
159949 TTTTTAAAAG
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 38 1.00
ACGTcount: A:0.25, C:0.09, G:0.24, T:0.42
Consensus pattern (29 bp):
GGTGCTATTCTGGGAATTAATTCGAAATG
Found at i:166748 original size:19 final size:19
Alignment explanation
Indices: 166724--166765 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
166714 CGCTGGAAAT
* *
166724 CGGTTTTGATCTGTTTAAC
1 CGGTTTTGACCGGTTTAAC
*
166743 CGGTTTTGACCGGTTTGAC
1 CGGTTTTGACCGGTTTAAC
166762 CGGT
1 CGGT
166766 CACGACCTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.12, C:0.19, G:0.29, T:0.40
Consensus pattern (19 bp):
CGGTTTTGACCGGTTTAAC
Found at i:166814 original size:18 final size:18
Alignment explanation
Indices: 166791--166838 Score: 78
Period size: 18 Copynumber: 2.7 Consensus size: 18
166781 CCGTTTACCT
*
166791 GACCCGTTGACCCGACCC
1 GACCCGTTGACCAGACCC
*
166809 GACCCGTTGACCAGACCT
1 GACCCGTTGACCAGACCC
166827 GACCCGTTGACC
1 GACCCGTTGACC
166839 GTTGACCGGT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.19, C:0.44, G:0.23, T:0.15
Consensus pattern (18 bp):
GACCCGTTGACCAGACCC
Found at i:171163 original size:20 final size:21
Alignment explanation
Indices: 171138--171177 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
171128 CTTTGTATAG
171138 TAGTATTA-ATACCAT-AGGCA
1 TAGTA-TAGATACCATCAGGCA
171158 TAGTATAGATACCATCAGGC
1 TAGTATAGATACCATCAGGC
171178 CCCAACGACT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 2 0.11
20 12 0.67
21 4 0.22
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28
Consensus pattern (21 bp):
TAGTATAGATACCATCAGGCA
Found at i:171236 original size:21 final size:21
Alignment explanation
Indices: 171212--171251 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
171202 TAACAAAGGT
171212 AGTACCGATACTCCT-TGTAGG
1 AGTACCGATAC-CCTCTGTAGG
*
171233 AGTATCGATACCCTCTGTA
1 AGTACCGATACCCTCTGTA
171252 TTGGGCAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 3 0.18
21 14 0.82
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (21 bp):
AGTACCGATACCCTCTGTAGG
Found at i:175141 original size:275 final size:275
Alignment explanation
Indices: 174643--175193 Score: 1084
Period size: 275 Copynumber: 2.0 Consensus size: 275
174633 GGAGTACCAA
*
174643 TACCCTTTGTACTGGGTAGTTTTATTTTGTAGAGATTTCATCCCCAAACGGCTAGAAATCATCCC
1 TACCCTCTGTACTGGGTAGTTTTATTTTGTAGAGATTTCATCCCCAAACGGCTAGAAATCATCCC
174708 CAACGGATAAAAACAACCACAACTTCATTCTAACACATAAATACAAGTTAAAGACATTTAAAGAA
66 CAACGGATAAAAACAACCACAACTTCATTCTAACACATAAATACAAGTTAAAGACATTTAAAGAA
174773 GGGTTGAACACCTATCCAAGCAATCAAACACGAGAAAAATTTTCATTCTTATTTTTCTATTCTCT
131 GGGTTGAACACCTATCCAAGCAATCAAACACGAGAAAAATTTTCATTCTTATTTTTCTATTCTCT
174838 TGTAAATATTTTGTTTTAGTAAGCTTAAATTTGTAAACACCTACCTTGTAAAGGTTTTCTTGTTT
196 TGTAAATATTTTGTTTTAGTAAGCTTAAATTTGTAAACACCTACCTTGTAAAGGTTTTCTTGTTT
174903 ATACTATTTTTCCTT
261 ATACTATTTTTCCTT
174918 TACCCTCTGTACTGGGTAGTTTTATTTTGTAGAGATTTCATCCCCAAACGGCTAGAAATCATCCC
1 TACCCTCTGTACTGGGTAGTTTTATTTTGTAGAGATTTCATCCCCAAACGGCTAGAAATCATCCC
174983 CAACGGATAAAAACAACCACAACTTCATTCTAACACATAAATACAAGTTAAAGACATTTAAAGAA
66 CAACGGATAAAAACAACCACAACTTCATTCTAACACATAAATACAAGTTAAAGACATTTAAAGAA
175048 GGGTTGAACACCTATCCAAGCAATCAAACACGAGAAAAATTTTCATTCTTATTTTTCTATTCTCT
131 GGGTTGAACACCTATCCAAGCAATCAAACACGAGAAAAATTTTCATTCTTATTTTTCTATTCTCT
*
175113 TGTAAATATTTTGTTTTAGTGAGCTTAAATTTGTAAACACCTACCTTGTAAAGGTTTTCTTGTTT
196 TGTAAATATTTTGTTTTAGTAAGCTTAAATTTGTAAACACCTACCTTGTAAAGGTTTTCTTGTTT
175178 ATACTATTTTTCCTT
261 ATACTATTTTTCCTT
175193 T
1 T
175194 TATAAAAGGG
Statistics
Matches: 274, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
275 274 1.00
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36
Consensus pattern (275 bp):
TACCCTCTGTACTGGGTAGTTTTATTTTGTAGAGATTTCATCCCCAAACGGCTAGAAATCATCCC
CAACGGATAAAAACAACCACAACTTCATTCTAACACATAAATACAAGTTAAAGACATTTAAAGAA
GGGTTGAACACCTATCCAAGCAATCAAACACGAGAAAAATTTTCATTCTTATTTTTCTATTCTCT
TGTAAATATTTTGTTTTAGTAAGCTTAAATTTGTAAACACCTACCTTGTAAAGGTTTTCTTGTTT
ATACTATTTTTCCTT
Found at i:181159 original size:21 final size:20
Alignment explanation
Indices: 181113--181159 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 20
181103 TTTGACCAGA
*
181113 AGTTTCAAAACTTCAACAAG
1 AGTTTCAAAACTTCAACAAC
181133 AGTTTCAAAACTTTCCAA-AAC
1 AGTTTCAAAAC-TT-CAACAAC
181154 AGTTTC
1 AGTTTC
181160 CCAAAAAGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 11 0.46
21 10 0.42
22 3 0.12
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (20 bp):
AGTTTCAAAACTTCAACAAC
Found at i:181228 original size:20 final size:20
Alignment explanation
Indices: 181175--181238 Score: 69
Period size: 20 Copynumber: 3.2 Consensus size: 20
181165 AAGTTCCGAT
*
181175 ACTTTC-CAATAGTTTCGAA
1 ACTTTCTCAAGAGTTTCGAA
*
181194 ACTATCTCAAGAGTTTCGAA
1 ACTTTCTCAAGAGTTTCGAA
* *
181214 ACTTTCATTAA-AGTTTCGAT
1 ACTTTC-TCAAGAGTTTCGAA
181234 ACTTT
1 ACTTT
181239 AGATCCAACG
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
19 5 0.13
20 30 0.79
21 3 0.08
ACGTcount: A:0.31, C:0.19, G:0.11, T:0.39
Consensus pattern (20 bp):
ACTTTCTCAAGAGTTTCGAA
Found at i:184827 original size:30 final size:32
Alignment explanation
Indices: 184793--184854 Score: 83
Period size: 30 Copynumber: 2.0 Consensus size: 32
184783 AGAAAAATGC
184793 TTATTTAACCCTTCT-AATTT-TATTTTAGTT
1 TTATTTAACCCTTCTCAATTTCTATTTTAGTT
* * *
184823 TTATTTTACCTTTCTCAGTTTCTATTTTAGTT
1 TTATTTAACCCTTCTCAATTTCTATTTTAGTT
184855 ATACTTTGTC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
30 13 0.48
31 4 0.15
32 10 0.37
ACGTcount: A:0.19, C:0.15, G:0.05, T:0.61
Consensus pattern (32 bp):
TTATTTAACCCTTCTCAATTTCTATTTTAGTT
Found at i:186061 original size:18 final size:18
Alignment explanation
Indices: 186010--186063 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
186000 TTTAACATGT
* *
186010 TTATGCATTTATATTTAT-
1 TTAT-CATTTTTAATTATA
*
186028 TTAT-ATTTTTCA-TATA
1 TTATCATTTTTAATTATA
186044 TTATCATTTTTAATTATA
1 TTATCATTTTTAATTATA
186062 TT
1 TT
186064 TGATTTAGAA
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
15 3 0.10
16 9 0.31
17 7 0.24
18 10 0.34
ACGTcount: A:0.30, C:0.06, G:0.02, T:0.63
Consensus pattern (18 bp):
TTATCATTTTTAATTATA
Found at i:188899 original size:20 final size:19
Alignment explanation
Indices: 188874--188927 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 19
188864 GCGAAATAAA
188874 AATCGCAACGCGATCTCCAG
1 AATCGCAACGCGATC-CCAG
** *
188894 AATCGCAAATCAGTTCCCAG
1 AATCGCAACGC-GATCCCAG
188914 AATCGCAACGCGAT
1 AATCGCAACGCGAT
188928 TATGAATAAT
Statistics
Matches: 27, Mismatches: 6, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
19 2 0.07
20 22 0.81
21 3 0.11
ACGTcount: A:0.33, C:0.31, G:0.19, T:0.17
Consensus pattern (19 bp):
AATCGCAACGCGATCCCAG
Found at i:188940 original size:21 final size:20
Alignment explanation
Indices: 188914--189031 Score: 80
Period size: 20 Copynumber: 5.8 Consensus size: 20
188904 CAGTTCCCAG
188914 AATCGCAACGCGATTATGAA
1 AATCGCAACGCGATTATGAA
*
188934 TAATCGCAATGCGA-TA-GTACA
1 -AATCGCAACGCGATTATG-A-A
** * * *
188955 AATTCGCATTGCGATTTTCCAG
1 AA-TCGCAACGCGATTAT-GAA
*
188977 AATCGCAACGCGAATATGAA
1 AATCGCAACGCGATTATGAA
**
188997 AATCGCAACGCGAACAT-ATA
1 AATCGCAACGCGATTATGA-A
189017 AATCGCAACGCGATT
1 AATCGCAACGCGATT
189032 CTGACTATCT
Statistics
Matches: 76, Mismatches: 14, Indels: 15
0.72 0.13 0.14
Matches are distributed among these distances:
19 2 0.03
20 36 0.47
21 34 0.45
22 3 0.04
23 1 0.01
ACGTcount: A:0.37, C:0.22, G:0.19, T:0.22
Consensus pattern (20 bp):
AATCGCAACGCGATTATGAA
Found at i:189002 original size:20 final size:20
Alignment explanation
Indices: 188977--189211 Score: 197
Period size: 20 Copynumber: 11.7 Consensus size: 20
188967 GATTTTCCAG
** *
188977 AATCGCAACGCGAATATGAA
1 AATCGCAACGCGAATCCGTA
**
188997 AATCGCAACGCGAA-CATATA
1 AATCGCAACGCGAATC-CGTA
* *
189017 AATCGCAACGCGATTCTG-A
1 AATCGCAACGCGAATCCGTA
* * * *
189036 CTATCTCAACGAGTATCCGTAA
1 -AATCGCAACGCGAATCCGT-A
* *
189058 AATCGCAACGTGTATCCGTA
1 AATCGCAACGCGAATCCGTA
* *
189078 AATCGCAACGAGAATACGTA
1 AATCGCAACGCGAATCCGTA
*
189098 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGAATCCGTA
* *
189118 AATCGCAACGAGAATACGTA
1 AATCGCAACGCGAATCCGTA
* *
189138 AATCGCAATGCGTATCCGTA
1 AATCGCAACGCGAATCCGTA
* *
189158 AATCGTAACGAC-AATACGTAA
1 AATCGCAACG-CGAATCCGT-A
*
189179 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGAATCCGTA
189199 AATCGCAACGCGA
1 AATCGCAACGCGA
189212 TTTTTAAAGC
Statistics
Matches: 172, Mismatches: 35, Indels: 16
0.77 0.16 0.07
Matches are distributed among these distances:
19 1 0.01
20 137 0.80
21 33 0.19
22 1 0.01
ACGTcount: A:0.37, C:0.25, G:0.19, T:0.19
Consensus pattern (20 bp):
AATCGCAACGCGAATCCGTA
Found at i:189081 original size:81 final size:80
Alignment explanation
Indices: 188977--189208 Score: 236
Period size: 81 Copynumber: 2.9 Consensus size: 80
188967 GATTTTCCAG
* ** * * *
188977 AATCGCAACGCGAATATGAAAATCGCAACGCGAACATATAAATCGCAACGCG-ATTC-TGACTAT
1 AATCGCAACGCGTATCCGTAAATCGCAACGCGAACATATAAATCGCAACGCGTATCCGT-A-AAT
* * *
189040 CTCAACGAGTATCCGTAA
64 CGCAACGAGAATACGT-A
* * * **
189058 AATCGCAACGTGTATCCGTAAATCGCAACGAGAATACGTAAATCGCAACGCGTATCCGTAAATCG
1 AATCGCAACGCGTATCCGTAAATCGCAACGCGAACATATAAATCGCAACGCGTATCCGTAAATCG
189123 CAACGAGAATACGTA
66 CAACGAGAATACGTA
* * * *
189138 AATCGCAATGCGTATCCGTAAATCGTAACGACAATACGTA-AAATCGCAACGCGTATCCGTAAAT
1 AATCGCAACGCGTATCCGTAAATCGCAACG-CGA-ACATATAAATCGCAACGCGTATCCGTAAAT
189202 CGCAACG
64 CGCAACG
189209 CGATTTTTAA
Statistics
Matches: 124, Mismatches: 23, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
80 28 0.23
81 90 0.73
82 5 0.04
83 1 0.01
ACGTcount: A:0.38, C:0.25, G:0.19, T:0.19
Consensus pattern (80 bp):
AATCGCAACGCGTATCCGTAAATCGCAACGCGAACATATAAATCGCAACGCGTATCCGTAAATCG
CAACGAGAATACGTA
Found at i:189113 original size:40 final size:41
Alignment explanation
Indices: 189042--189208 Score: 266
Period size: 40 Copynumber: 4.1 Consensus size: 41
189032 CTGACTATCT
* * *
189042 CAACGAGTATCCGTAAAATCGCAACGTGTATCCGTAAATCG
1 CAACGAGAATACGTAAAATCGCAACGCGTATCCGTAAATCG
189083 CAACGAGAATACGT-AAATCGCAACGCGTATCCGTAAATCG
1 CAACGAGAATACGTAAAATCGCAACGCGTATCCGTAAATCG
*
189123 CAACGAGAATACGT-AAATCGCAATGCGTATCCGTAAATCG
1 CAACGAGAATACGTAAAATCGCAACGCGTATCCGTAAATCG
* *
189163 TAACGACAATACGTAAAATCGCAACGCGTATCCGTAAATCG
1 CAACGAGAATACGTAAAATCGCAACGCGTATCCGTAAATCG
189204 CAACG
1 CAACG
189209 CGATTTTTAA
Statistics
Matches: 117, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
40 76 0.65
41 41 0.35
ACGTcount: A:0.37, C:0.25, G:0.19, T:0.19
Consensus pattern (41 bp):
CAACGAGAATACGTAAAATCGCAACGCGTATCCGTAAATCG
Found at i:189838 original size:21 final size:20
Alignment explanation
Indices: 189768--189876 Score: 85
Period size: 20 Copynumber: 5.8 Consensus size: 20
189758 TTCTAAACTT
189768 AAAATCGCAACATGA-AAATG
1 AAAATCGCAACA-GAGAAATG
189788 AAAATCGCAACACGA-AAATG
1 AAAATCGCAACA-GAGAAATG
**
189808 ACTATCGCAACGAGAGAAATG
1 AAAATCGCAAC-AGAGAAATG
*
189829 AAAATAGCAACA-AG--A-G
1 AAAATCGCAACAGAGAAATG
*
189845 --AATCGCAAC-GCGAAATG
1 AAAATCGCAACAGAGAAATG
189862 AAAATCGCAAC-GAGA
1 AAAATCGCAACAGAGA
189877 TAATCGCAAC
Statistics
Matches: 72, Mismatches: 9, Indels: 17
0.73 0.09 0.17
Matches are distributed among these distances:
14 9 0.12
16 2 0.03
17 2 0.03
19 14 0.19
20 31 0.43
21 14 0.19
ACGTcount: A:0.51, C:0.18, G:0.19, T:0.11
Consensus pattern (20 bp):
AAAATCGCAACAGAGAAATG
Found at i:189864 original size:33 final size:33
Alignment explanation
Indices: 189823--189892 Score: 113
Period size: 33 Copynumber: 2.1 Consensus size: 33
189813 CGCAACGAGA
189823 GAAATGAAAATAGCAACAAGAGAATCGCAACGC
1 GAAATGAAAATAGCAACAAGAGAATCGCAACGC
* * *
189856 GAAATGAAAATCGCAACGAGATAATCGCAACGC
1 GAAATGAAAATAGCAACAAGAGAATCGCAACGC
189889 GAAA
1 GAAA
189893 CCAAAATCGC
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.50, C:0.19, G:0.21, T:0.10
Consensus pattern (33 bp):
GAAATGAAAATAGCAACAAGAGAATCGCAACGC
Found at i:189899 original size:33 final size:33
Alignment explanation
Indices: 189829--189903 Score: 105
Period size: 33 Copynumber: 2.3 Consensus size: 33
189819 GAGAGAAATG
* **
189829 AAAATAGCAACAAGAGAATCGCAACGCGAAATG
1 AAAATCGCAACAAGAGAATCGCAACGCGAAACC
* *
189862 AAAATCGCAACGAGATAATCGCAACGCGAAACC
1 AAAATCGCAACAAGAGAATCGCAACGCGAAACC
189895 AAAATCGCA
1 AAAATCGCA
189904 TTGCGATTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.49, C:0.23, G:0.19, T:0.09
Consensus pattern (33 bp):
AAAATCGCAACAAGAGAATCGCAACGCGAAACC
Found at i:189955 original size:38 final size:39
Alignment explanation
Indices: 189899--189977 Score: 97
Period size: 39 Copynumber: 2.1 Consensus size: 39
189889 GAAACCAAAA
** *
189899 TCGCATTGCGATTTTCATT-TCGCGTTGTGATTTTAATT
1 TCGCATTGCGATAGTCATTCTCGCGTTGCGATTTTAATT
* * *
189937 TCGCGTTGCGATAGTCATTCTCTCGTTGCGATTTTCATT
1 TCGCATTGCGATAGTCATTCTCGCGTTGCGATTTTAATT
189976 TC
1 TC
189978 AACCAAAAGA
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
38 16 0.47
39 18 0.53
ACGTcount: A:0.14, C:0.20, G:0.19, T:0.47
Consensus pattern (39 bp):
TCGCATTGCGATAGTCATTCTCGCGTTGCGATTTTAATT
Found at i:189974 original size:20 final size:19
Alignment explanation
Indices: 189899--189977 Score: 95
Period size: 19 Copynumber: 4.1 Consensus size: 19
189889 GAAACCAAAA
*
189899 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
* *
189918 TCGCGTTGTGATTTTAATT
1 TCGCGTTGCGATTTTCATT
**
189937 TCGCGTTGCGATAGTCATT
1 TCGCGTTGCGATTTTCATT
*
189956 CTCTCGTTGCGATTTTCATT
1 -TCGCGTTGCGATTTTCATT
189976 TC
1 TC
189978 AACCAAAAGA
Statistics
Matches: 49, Mismatches: 10, Indels: 2
0.80 0.16 0.03
Matches are distributed among these distances:
19 33 0.67
20 16 0.33
ACGTcount: A:0.14, C:0.20, G:0.19, T:0.47
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:191833 original size:94 final size:94
Alignment explanation
Indices: 191672--192033 Score: 618
Period size: 94 Copynumber: 3.9 Consensus size: 94
191662 TAGATTGCTT
* *
191672 AGTAAATTTATTCGATTGCTGCCAATACTGCTAAACTGTTTATTCTTTAACACTGTGAAGTTAGT
1 AGTAAATTTATTCGATTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
191737 ATTTGTCTTTTGTTTTGTCTTTTGGTTG-A
66 ATTTGTC-TTTGTTTTGTCTTTTGGTTGAA
191766 AGTAAATTTATTCGATTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
1 AGTAAATTTATTCGATTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
*
191831 ATTTGTCTTTGTTTTATCTTTTGGTTGAA
66 ATTTGTCTTTGTTTTGTCTTTTGGTTGAA
* *
191860 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
1 AGTAAATTTATTCGATTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
191925 ATTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 ATTTGTCTTTGTTTTGTCTTTTGGTTGAA
* * * * *
191954 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAATTGTGTATTCTTTAATACTCTGAAGTTAGT
1 AGTAAATTTATTCGATTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
192019 ATTTGTCTTTGTTTT
66 ATTTGTCTTTGTTTT
192034 CACTGTTTAA
Statistics
Matches: 258, Mismatches: 9, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
93 19 0.07
94 239 0.93
ACGTcount: A:0.22, C:0.13, G:0.18, T:0.48
Consensus pattern (94 bp):
AGTAAATTTATTCGATTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
ATTTGTCTTTGTTTTGTCTTTTGGTTGAA
Found at i:193872 original size:33 final size:33
Alignment explanation
Indices: 193824--193917 Score: 161
Period size: 33 Copynumber: 2.8 Consensus size: 33
193814 AAAAATGACT
*
193824 ATCGTAATGCGAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
*
193857 ATCGCAATGCAAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
*
193890 ATTGCAATGCGAAATGAAAATCGCAACG
1 ATCGCAATGCGAAATGAAAATCGCAACG
193918 CGAAACTAAA
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 57 1.00
ACGTcount: A:0.46, C:0.17, G:0.22, T:0.15
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
Found at i:193920 original size:19 final size:18
Alignment explanation
Indices: 193832--193922 Score: 63
Period size: 19 Copynumber: 5.3 Consensus size: 18
193822 CTATCGTAAT
193832 GCGAAATGAAAATCGCAA
1 GCGAAATGAAAATCGCAA
*
193850 -CG--A-GAGAATCGCAA
1 GCGAAATGAAAATCGCAA
*
193864 TGCAAAATGAAAATCGCAA
1 -GCGAAATGAAAATCGCAA
* *
193883 -CG--A-GAGAATTGCAA
1 GCGAAATGAAAATCGCAA
193897 TGCGAAATGAAAATCGCAA
1 -GCGAAATGAAAATCGCAA
193916 CGCGAAA
1 -GCGAAA
193923 CTAAATTCGC
Statistics
Matches: 54, Mismatches: 9, Indels: 19
0.66 0.11 0.23
Matches are distributed among these distances:
14 19 0.35
15 2 0.04
16 3 0.06
17 3 0.06
18 2 0.04
19 25 0.46
ACGTcount: A:0.47, C:0.18, G:0.23, T:0.12
Consensus pattern (18 bp):
GCGAAATGAAAATCGCAA
Found at i:193950 original size:19 final size:19
Alignment explanation
Indices: 193928--194085 Score: 111
Period size: 19 Copynumber: 8.7 Consensus size: 19
193918 CGAAACTAAA
193928 TTCGCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
*
193947 TTCGCTTTGCGA--TTC--
1 TTCGCGTTGCGATTTTCAT
* **
193962 -CCTAGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
* *
193980 TTCGCATTGCGATTCTC--
1 TTCGCGTTGCGATTTTCAT
*
193997 TT---GTTGTGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
* **
194013 TTCGCATTGCGATAGTCATT
1 TTCGCGTTGCGATTTTCA-T
* *
194033 TTCACGTTGCGATATTCAT
1 TTCGCGTTGCGATTTTCAT
194052 ATTCGCGTTGCGATTTTCAT
1 -TTCGCGTTGCGATTTTCAT
*
194072 TTCGCATTGCGATT
1 TTCGCGTTGCGATT
194086 CTCTCGTTGC
Statistics
Matches: 104, Mismatches: 23, Indels: 24
0.69 0.15 0.16
Matches are distributed among these distances:
14 16 0.15
16 5 0.05
17 5 0.05
19 45 0.43
20 33 0.32
ACGTcount: A:0.15, C:0.21, G:0.19, T:0.46
Consensus pattern (19 bp):
TTCGCGTTGCGATTTTCAT
Found at i:193975 original size:33 final size:33
Alignment explanation
Indices: 193933--194025 Score: 150
Period size: 33 Copynumber: 2.8 Consensus size: 33
193923 CTAAATTCGC
*
193933 GTTGCGATTTTCATTTCGCTTTGCGATTCCCTA
1 GTTGCGATTTTCATTTCGCATTGCGATTCCCTA
* *
193966 GTTGCGATTTTCATTTCGCATTGCGATTCTCTT
1 GTTGCGATTTTCATTTCGCATTGCGATTCCCTA
*
193999 GTTGTGATTTTCATTTCGCATTGCGAT
1 GTTGCGATTTTCATTTCGCATTGCGAT
194026 AGTCATTTTC
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 56 1.00
ACGTcount: A:0.13, C:0.20, G:0.19, T:0.47
Consensus pattern (33 bp):
GTTGCGATTTTCATTTCGCATTGCGATTCCCTA
Found at i:194042 original size:20 final size:20
Alignment explanation
Indices: 194019--194065 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
194009 TCATTTCGCA
*
194019 TTGCGATAGTCATTTTCACG
1 TTGCGATAGTCATATTCACG
* *
194039 TTGCGATATTCATATTCGCG
1 TTGCGATAGTCATATTCACG
194059 TTGCGAT
1 TTGCGAT
194066 TTTCATTTCG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.19, C:0.19, G:0.21, T:0.40
Consensus pattern (20 bp):
TTGCGATAGTCATATTCACG
Found at i:194073 original size:40 final size:39
Alignment explanation
Indices: 193966--194065 Score: 104
Period size: 33 Copynumber: 2.7 Consensus size: 39
193956 CGATTCCCTA
* *
193966 GTTGCGATTTTCATTTCGCATTGCGAT--TC-TCTT---
1 GTTGCGATATTCATTTCGCATTGCGATAGTCATTTTCAC
* *
193999 GTTGTGATTTTCATTTCGCATTGCGATAGTCATTTTCAC
1 GTTGCGATATTCATTTCGCATTGCGATAGTCATTTTCAC
*
194038 GTTGCGATATTCATATTCGCGTTGCGAT
1 GTTGCGATATTCAT-TTCGCATTGCGAT
194066 TTTCATTTCG
Statistics
Matches: 55, Mismatches: 5, Indels: 7
0.82 0.07 0.10
Matches are distributed among these distances:
33 26 0.47
35 2 0.04
36 3 0.05
39 12 0.22
40 12 0.22
ACGTcount: A:0.16, C:0.19, G:0.20, T:0.45
Consensus pattern (39 bp):
GTTGCGATATTCATTTCGCATTGCGATAGTCATTTTCAC
Found at i:196597 original size:24 final size:24
Alignment explanation
Indices: 196563--196616 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
196553 CTGAAAAATC
196563 ATCAAAATCCGAGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
* *
196587 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
196611 ATCAAA
1 ATCAAA
196617 TTTCGAATAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.41, C:0.20, G:0.19, T:0.20
Consensus pattern (24 bp):
ATCAAAATCCGAGTATTGACCAAG
Found at i:196630 original size:24 final size:24
Alignment explanation
Indices: 196563--196630 Score: 64
Period size: 24 Copynumber: 2.8 Consensus size: 24
196553 CTGAAAAATC
* * *
196563 ATCAAAATCCGAGTATTGACCAAG
1 ATCAAAGTCCGAATACTGACCAAG
** *
196587 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAGTCCGAATACTGACCAAG
* *
196611 ATCAAATTTCGAATACTGAC
1 ATCAAAGTCCGAATACTGAC
196631 TAGTACTCAC
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.18, T:0.24
Consensus pattern (24 bp):
ATCAAAGTCCGAATACTGACCAAG
Found at i:197501 original size:20 final size:19
Alignment explanation
Indices: 197476--197827 Score: 231
Period size: 20 Copynumber: 17.5 Consensus size: 19
197466 GTCAGAATCT
197476 CGTTGCGATTTACAGATTCG
1 CGTTGCGATTTAC-GATTCG
* **
197496 CATTGCGATTTACGTATTTA
1 CGTTGCGATTTACG-ATTCG
*
197516 CATTGCGATTTACGTATTCG
1 CGTTGCGATTTACG-ATTCG
** * *
197536 TATTGCGATTTACTAAATCG
1 CGTTGCGATTTAC-GATTCG
*
197556 CATTGCGATTTACGTATTCG
1 CGTTGCGATTTACG-ATTCG
* *
197576 CATTGCGATTTATGTATTCG
1 CGTTGCGATTTACG-ATTCG
* * *
197596 CATTGCAATTTACGTATTCT
1 CGTTGCGATTTACG-ATTCG
*
197616 CGTTGCGATTTACGTATTCT
1 CGTTGCGATTTACG-ATTCG
*
197636 CGTTGCGATTTACAGATACG
1 CGTTGCGATTTAC-GATTCG
* *
197656 CGTTGCTATTTACGTATTCT
1 CGTTGCGATTTACG-ATTCG
*
197676 CGTTGCGATTTACGGATACG
1 CGTTGCGATTTAC-GATTCG
*
197696 CGTTGCGATTTTATGTATT-G
1 CGTTGCGA-TTTACG-ATTCG
*
197716 TCGTTGCGATTTACGGATACG
1 -CGTTGCGATTTAC-GATTCG
* *
197737 CGTTGCGATTTTACGGATACT
1 CGTTGCGA-TTTAC-GATTCG
* * *
197758 CGTTGTGATAGT-CAGAATCG
1 CGTTGCGAT-TTAC-GATTCG
**
197778 CGTTGCGATTTATATATTCG
1 CGTTGCGATTTA-CGATTCG
* *
197798 CGTTGCGATTTTCATATTCG
1 CGTTGCGATTTAC-GATTCG
197818 CGTTGCGATT
1 CGTTGCGATT
197828 CTGGAAAATC
Statistics
Matches: 273, Mismatches: 43, Indels: 32
0.78 0.12 0.09
Matches are distributed among these distances:
19 3 0.01
20 233 0.85
21 37 0.14
ACGTcount: A:0.20, C:0.18, G:0.22, T:0.40
Consensus pattern (19 bp):
CGTTGCGATTTACGATTCG
Found at i:197535 original size:40 final size:40
Alignment explanation
Indices: 197473--197827 Score: 290
Period size: 40 Copynumber: 8.8 Consensus size: 40
197463 ATAGTCAGAA
* *
197473 TCTCGTTGCGATTTACAG-ATTCGCATTGCGATTTACGTAT
1 TCTCATTGCGATTTAC-GTATTCGCGTTGCGATTTACGTAT
** *
197513 T-TACATTGCGATTTACGTATTCGTATTGCGATTTAC-TAAA
1 TCT-CATTGCGATTTACGTATTCGCGTTGCGATTTACGT-AT
* * *
197553 TCGCATTGCGATTTACGTATTCGCATTGCGATTTATGTAT
1 TCTCATTGCGATTTACGTATTCGCGTTGCGATTTACGTAT
* * *
197593 TCGCATTGCAATTTACGTATTCTCGTTGCGATTTACGTAT
1 TCTCATTGCGATTTACGTATTCGCGTTGCGATTTACGTAT
* * *
197633 TCTCGTTGCGATTTACAG-ATACGCGTTGCTATTTACGTAT
1 TCTCATTGCGATTTAC-GTATTCGCGTTGCGATTTACGTAT
* * * *
197673 TCTCGTTGCGATTTACGGATACGCGTTGCGATTTTATGTAT
1 TCTCATTGCGATTTACGTATTCGCGTTGCGA-TTTACGTAT
* * * * *
197714 TGTCGTTGCGATTTACGGATACGCGTTGCGATTTTACGGAT
1 TCTCATTGCGATTTACGTATTCGCGTTGCGA-TTTACGTAT
* * * * * **
197755 ACTCGTTGTGATAGT-CAG-AATCGCGTTGCGATTTATATAT
1 TCTCATTGCGAT-TTAC-GTATTCGCGTTGCGATTTACGTAT
* * * *
197795 TCGCGTTGCGATTTTCATATTCGCGTTGCGATT
1 TCTCATTGCGATTTACGTATTCGCGTTGCGATT
197828 CTGGAAAATC
Statistics
Matches: 266, Mismatches: 37, Indels: 24
0.81 0.11 0.07
Matches are distributed among these distances:
39 5 0.02
40 190 0.71
41 69 0.26
42 2 0.01
ACGTcount: A:0.20, C:0.18, G:0.21, T:0.41
Consensus pattern (40 bp):
TCTCATTGCGATTTACGTATTCGCGTTGCGATTTACGTAT
Found at i:197700 original size:60 final size:60
Alignment explanation
Indices: 197476--197827 Score: 277
Period size: 60 Copynumber: 5.8 Consensus size: 60
197466 GTCAGAATCT
* ** * *
197476 CGTTGCGATTTACAG-ATTCGCATTGCGATTTACGTATTTACATTGCGATTTACG-TATTCG
1 CGTTGCGATTTAC-GTATTCGCGTTGCGATTTACGTATTCGCGTTGCGATTTAAGATA-TCG
** * * * *
197536 TATTGCGATTTAC-TAAATCGCATTGCGATTTACGTATTCGCATTGCGATTTATG-TATTCG
1 CGTTGCGATTTACGT-ATTCGCGTTGCGATTTACGTATTCGCGTTGCGATTTAAGATA-TCG
* * * *
197596 CATTGCAATTTACGTATTCTCGTTGCGATTTACGTATTCTCGTTGCGATTTACAGATA-CG
1 CGTTGCGATTTACGTATTCGCGTTGCGATTTACGTATTCGCGTTGCGATTTA-AGATATCG
* * * * * *
197656 CGTTGCTATTTACGTATTCTCGTTGCGATTTACGGATACGCGTTGCGATTTTATG-TATTG
1 CGTTGCGATTTACGTATTCGCGTTGCGATTTACGTATTCGCGTTGCGA-TTTAAGATATCG
* * * * * * * *
197716 TCGTTGCGATTTACGGATACGCGTTGCGATTTTACGGATACTCGTTGTGATAGTCAGA-ATCG
1 -CGTTGCGATTTACGTATTCGCGTTGCGA-TTTACGTATTCGCGTTGCGAT-TTAAGATATCG
** * *
197778 CGTTGCGATTTATATATTCGCGTTGCGATTTTCATATTCGCGTTGCGATT
1 CGTTGCGATTTACGTATTCGCGTTGCGATTTACGTATTCGCGTTGCGATT
197828 CTGGAAAATC
Statistics
Matches: 239, Mismatches: 42, Indels: 23
0.79 0.14 0.08
Matches are distributed among these distances:
59 2 0.01
60 157 0.66
61 55 0.23
62 25 0.10
ACGTcount: A:0.20, C:0.18, G:0.22, T:0.40
Consensus pattern (60 bp):
CGTTGCGATTTACGTATTCGCGTTGCGATTTACGTATTCGCGTTGCGATTTAAGATATCG
Found at i:197820 original size:81 final size:81
Alignment explanation
Indices: 197616--197827 Score: 243
Period size: 81 Copynumber: 2.6 Consensus size: 81
197606 TACGTATTCT
* * * * *
197616 CGTTGCGATTTACGTATTCTCGTTGCGATTTACAGATACGCGTTGCTA-TTTACGTATTCTCGTT
1 CGTTGCGATTTATGTATTCGCGTTGCGATTTACAGATACGCGTTGCGATTTTACGGATACTCGTT
* *
197680 GCGATTTACGGATACG
66 GCGATTCACGAATACG
*
197696 CGTTGCGATTTTATGTATT-GTCGTTGCGATTTACGGATACGCGTTGCGATTTTACGGATACTCG
1 CGTTGCGA-TTTATGTATTCG-CGTTGCGATTTACAGATACGCGTTGCGATTTTACGGATACTCG
*
197760 TTGTGATAGTCA-GAAT-CG
64 TTGCGAT--TCACGAATACG
* * * *
197778 CGTTGCGATTTATATATTCGCGTTGCGATTTTCATATTCGCGTTGCGATT
1 CGTTGCGATTTATGTATTCGCGTTGCGATTTACAGATACGCGTTGCGATT
197828 CTGGAAAATC
Statistics
Matches: 112, Mismatches: 14, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
80 8 0.07
81 70 0.62
82 29 0.26
83 3 0.03
84 2 0.02
ACGTcount: A:0.18, C:0.18, G:0.24, T:0.40
Consensus pattern (81 bp):
CGTTGCGATTTATGTATTCGCGTTGCGATTTACAGATACGCGTTGCGATTTTACGGATACTCGTT
GCGATTCACGAATACG
Found at i:198969 original size:2 final size:2
Alignment explanation
Indices: 198962--198994 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
198952 CTGTTTTCCG
198962 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
198995 AGGGTAAATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:203814 original size:4 final size:4
Alignment explanation
Indices: 203805--203839 Score: 70
Period size: 4 Copynumber: 8.8 Consensus size: 4
203795 ACCATTGGTT
203805 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
203840 AATATATATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.51, C:0.23, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:203904 original size:19 final size:20
Alignment explanation
Indices: 203869--203906 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
203859 TGTTAGATTT
*
203869 CAGTTATTTAGTTTGTTAGG
1 CAGTTATTTAATTTGTTAGG
203889 CAGTTA-TTAATTTGTTAG
1 CAGTTATTTAATTTGTTAG
203907 TTTGTTAGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.24, C:0.05, G:0.21, T:0.50
Consensus pattern (20 bp):
CAGTTATTTAATTTGTTAGG
Found at i:208430 original size:19 final size:20
Alignment explanation
Indices: 208395--208432 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
208385 TGTTAGATTT
*
208395 CAGTTATTTAGTTTGTTAGG
1 CAGTTATTTAATTTGTTAGG
208415 CAGTTA-TTAATTTGTTAG
1 CAGTTATTTAATTTGTTAG
208433 TTTGTTAGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.24, C:0.05, G:0.21, T:0.50
Consensus pattern (20 bp):
CAGTTATTTAATTTGTTAGG
Found at i:208545 original size:2 final size:2
Alignment explanation
Indices: 208538--208563 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
208528 ACCTTTTAAC
208538 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
208564 CCACTTTTGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:208998 original size:12 final size:12
Alignment explanation
Indices: 208981--209014 Score: 68
Period size: 12 Copynumber: 2.8 Consensus size: 12
208971 GTGACATCTA
208981 ATCAATTTGAAG
1 ATCAATTTGAAG
208993 ATCAATTTGAAG
1 ATCAATTTGAAG
209005 ATCAATTTGA
1 ATCAATTTGA
209015 GAAATGAGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.41, C:0.09, G:0.15, T:0.35
Consensus pattern (12 bp):
ATCAATTTGAAG
Found at i:217644 original size:52 final size:52
Alignment explanation
Indices: 217548--217646 Score: 146
Period size: 52 Copynumber: 1.9 Consensus size: 52
217538 AAAAACTAAG
* *
217548 CATTCAGTCTGTTTCTATACATACAAATGGTGAATTGGAACCAAAAAAATTT
1 CATTCAGTCTGTTTCTATACATACAAATGGTGAACTAGAACCAAAAAAATTT
* *
217600 CATTCAGTTTGTTTCTATACATGA-AAATGGTGAACTAGACCCAAAAA
1 CATTCAGTCTGTTTCTATACAT-ACAAATGGTGAACTAGAACCAAAAA
217647 GCCTTTTTTT
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
52 41 0.98
53 1 0.02
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.31
Consensus pattern (52 bp):
CATTCAGTCTGTTTCTATACATACAAATGGTGAACTAGAACCAAAAAAATTT
Found at i:220194 original size:159 final size:159
Alignment explanation
Indices: 219905--220215 Score: 550
Period size: 159 Copynumber: 2.0 Consensus size: 159
219895 GAAGTGTACT
219905 AGGTGGTTCCACAAATTCTGGAGCCACAGAGACAACAGGAGAATTAACAGCATTACCATGAATTA
1 AGGTGGTTCCACAAATTCTGGAGCCACAGAGACAACAGGAGAATTAACAGCATTACCATGAATTA
* *
219970 TCTCTTCATTGTTCGAAAGAGCAACAACTTCAGTGCTATGACCAACATCATAAGCAGAATCATTA
66 TCTCTTCATTGTTCGAAAGAACAACAACATCAGTGCTATGACCAACATCATAAGCAGAATCATTA
*
220035 GCAATACGAGGAACAATAACAGATTGCAC
131 GCAATACGAGGAACAACAACAGATTGCAC
* * *
220064 AGGTGGTTCCACAAATTCTGGAGCCACAGAGACTACAGGGGAATTAACAGTATTACCATGAATTA
1 AGGTGGTTCCACAAATTCTGGAGCCACAGAGACAACAGGAGAATTAACAGCATTACCATGAATTA
* *
220129 TCTCTTCATTGTTCGAAGGAACAACAACATCAGTGCTATGACCAGCATCATAAGCAGAATCATTA
66 TCTCTTCATTGTTCGAAAGAACAACAACATCAGTGCTATGACCAACATCATAAGCAGAATCATTA
220194 GCAATACGAGGAACAACAACAG
131 GCAATACGAGGAACAACAACAG
220216 GCAGTACGCT
Statistics
Matches: 144, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
159 144 1.00
ACGTcount: A:0.38, C:0.21, G:0.19, T:0.22
Consensus pattern (159 bp):
AGGTGGTTCCACAAATTCTGGAGCCACAGAGACAACAGGAGAATTAACAGCATTACCATGAATTA
TCTCTTCATTGTTCGAAAGAACAACAACATCAGTGCTATGACCAACATCATAAGCAGAATCATTA
GCAATACGAGGAACAACAACAGATTGCAC
Found at i:231463 original size:12 final size:12
Alignment explanation
Indices: 231446--231477 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
231436 GAGCATTTTG
*
231446 TATGTTCCGACA
1 TATGTTCCGAAA
231458 TATGTTCCGAAA
1 TATGTTCCGAAA
231470 TATGTTCC
1 TATGTTCC
231478 ATTGGTGGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.38
Consensus pattern (12 bp):
TATGTTCCGAAA
Found at i:236563 original size:112 final size:113
Alignment explanation
Indices: 236426--236648 Score: 360
Period size: 112 Copynumber: 2.0 Consensus size: 113
236416 AACTTTCAAC
* **
236426 AAAGTATCGATACATTTTTAT-AAAAAGTATCTATAATTTCAACATATTAGGTAAATTTTACTGG
1 AAAGTATCGATACATTTTTATAAAAAAG-ATCGATAATTTCAACATATTAGGTAAATTTTACCAG
* *
236490 TTTTATTATAATGAAACTGGTTTTGTCATATTTTTACTTGTTATATTAT
65 TTTTATCATAATGAAACTGGTTTTGTCATATTTTTACCTGTTATATTAT
*
236539 AAAGTATCGAT-CATTTTTATAAAAAAGATCGATACTTTCAACATATTAGGTAAATTTTACCAGT
1 AAAGTATCGATACATTTTTATAAAAAAGATCGATAATTTCAACATATTAGGTAAATTTTACCAGT
*
236603 TTTGTCATAATGAAACTGGTTTTGTCATATTTTTACCTGTTATATT
66 TTTATCATAATGAAACTGGTTTTGTCATATTTTTACCTGTTATATT
236649 GTAATAACAA
Statistics
Matches: 102, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
112 85 0.83
113 17 0.17
ACGTcount: A:0.34, C:0.10, G:0.11, T:0.45
Consensus pattern (113 bp):
AAAGTATCGATACATTTTTATAAAAAAGATCGATAATTTCAACATATTAGGTAAATTTTACCAGT
TTTATCATAATGAAACTGGTTTTGTCATATTTTTACCTGTTATATTAT
Found at i:236811 original size:87 final size:87
Alignment explanation
Indices: 236665--236871 Score: 353
Period size: 87 Copynumber: 2.4 Consensus size: 87
236655 ACAAATTAAA
* * *
236665 TAATTAACCTATTTTATTATATAAGCGTTACATATTACGTTATATAAGTGCTACCTAATATGTTA
1 TAATTAACCTATTTTATTATATAAGCGCTACCTATTACATTATATAAGTGCTACCTAATATGTTA
*
236730 TTGTGCTTGATAATGTTTCTAG
66 TTGTGCTTGATAATGTTTCCAG
*
236752 TAATTAACCTATTTTATTATATAAGCGCTACCTATTACATTATATGAGTGGC-ACCTAATATGTT
1 TAATTAACCTATTTTATTATATAAGCGCTACCTATTACATTATATAAGT-GCTACCTAATATGTT
236816 ATTGTGCTTGATAATGTTTCCAG
65 ATTGTGCTTGATAATGTTTCCAG
236839 TAATTAACCTATTTTATTATATAAGCGCTACCT
1 TAATTAACCTATTTTATTATATAAGCGCTACCT
236872 CTGTGGAAAA
Statistics
Matches: 114, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
87 112 0.98
88 2 0.02
ACGTcount: A:0.31, C:0.14, G:0.12, T:0.43
Consensus pattern (87 bp):
TAATTAACCTATTTTATTATATAAGCGCTACCTATTACATTATATAAGTGCTACCTAATATGTTA
TTGTGCTTGATAATGTTTCCAG
Found at i:237390 original size:113 final size:113
Alignment explanation
Indices: 237192--237787 Score: 875
Period size: 113 Copynumber: 5.3 Consensus size: 113
237182 TTCAACAAAA
** * *
237192 TATCGATACATTTTTATAAAAA-GTATTTATACTTTCAACATATCAGGTGAATTTTACTGGTTTT
1 TATCGATACATTTTTATAAAAATG-ATCGATACTTTCAACATATTAGGTAAATTTTACTGGTTTT
* * *
237256 ATCATAATGAAACTAGTTTTGTCATATTTTTACCTGCTATATTGTAAAG
65 GTCATAATGAAACTGGTTTTGTCATATTTTTACCTGTTATATTGTAAAG
* *
237305 TATCGAT-CCTTTTTATAAAAAATGATCGATACTTTCAACATATTAGGTAAATTTTACTAGTTTT
1 TATCGATACATTTTTAT-AAAAATGATCGATACTTTCAACATATTAGGTAAATTTTACTGGTTTT
237369 GTCATAATGAAACTGGTTTTGTCATATTTTTACCTGTTATATTGTAAAG
65 GTCATAATGAAACTGGTTTTGTCATATTTTTACCTGTTATATTGTAAAG
* *
237418 TATAGAT-CATTTTTATAAAAA-GAATAGATACTTTCAACATATTAGGTAAATTTTA-TCGGTTT
1 TATCGATACATTTTTATAAAAATG-ATCGATACTTTCAACATATTAGGTAAATTTTACT-GGTTT
* **
237480 TATCATAATGAAACTGGTTTTGTCATATTTTTACAAGTTATATTGTAAAG
64 TGTCATAATGAAACTGGTTTTGTCATATTTTTACCTGTTATATTGTAAAG
* * * *
237530 TATCAAT-CATTTTTATATAAAGGATCGATACTTTCAACATATTAGGTAAATTTTACCGGTTTTG
1 TATCGATACATTTTTATAAAAATGATCGATACTTTCAACATATTAGGTAAATTTTACTGGTTTTG
* *
237594 TCATAATAAAACTGGTTTTATCATATTTTTACCTGTTATATTGTAAAG
66 TCATAATGAAACTGGTTTTGTCATATTTTTACCTGTTATATTGTAAAG
** *
237642 TATCGATACATTTTTATAAAAATGATCGATACTTTCAACATATCCGGTAAATTTTACCGGTTTTG
1 TATCGATACATTTTTATAAAAATGATCGATACTTTCAACATATTAGGTAAATTTTACTGGTTTTG
*
237707 TTATAATGAAACTGGTTTTGTCATATTTTTACCTGTTATATTGTAAAG
66 TCATAATGAAACTGGTTTTGTCATATTTTTACCTGTTATATTGTAAAG
*
237755 TATCGATACATTTTTAT-AAAGT-ATCGATACTTT
1 TATCGATACATTTTTATAAAAATGATCGATACTTT
237788 ATAGACGCTA
Statistics
Matches: 441, Mismatches: 35, Indels: 16
0.90 0.07 0.03
Matches are distributed among these distances:
111 13 0.03
112 204 0.46
113 223 0.51
114 1 0.00
ACGTcount: A:0.33, C:0.11, G:0.12, T:0.44
Consensus pattern (113 bp):
TATCGATACATTTTTATAAAAATGATCGATACTTTCAACATATTAGGTAAATTTTACTGGTTTTG
TCATAATGAAACTGGTTTTGTCATATTTTTACCTGTTATATTGTAAAG
Found at i:237656 original size:225 final size:223
Alignment explanation
Indices: 237192--237787 Score: 901
Period size: 225 Copynumber: 2.7 Consensus size: 223
237182 TTCAACAAAA
** *
237192 TATCGATACATTTTTATAAAAAGTATTTATACTTTCAACATATCAGGTGAATTTTACTGGTTTTA
1 TATCGATACATTTTTATAAAAAG-ATAGATACTTTCAACATATCAGGTAAATTTTAC-GGTTTTA
* * *
237257 TCATAATGAAACTAGTTTTGTCATATTTTTACCTGCTATATTGTAAAGTATCGATCCTTTTTATA
64 TCATAATGAAACTGGTTTTGTCATATTTTTACCTGTTATATTGTAAAGTATCGATCATTTTTAT-
* * * *
237322 AAAAATGATCGATACTTTCAACATATTAGGTAAATTTTACTAGTTTTGTCATAATGAAACTGGTT
128 ATAAAGGATCGATACTTTCAACATATTAGGTAAATTTTACCAGTTTTGTCATAATAAAACTGGTT
*
237387 TTGTCATATTTTTACCTGTTATATTGTAAAG
193 TTATCATATTTTTACCTGTTATATTGTAAAG
* *
237418 TATAGAT-CATTTTTATAAAAAGAATAGATACTTTCAACATATTAGGTAAATTTTATCGGTTTTA
1 TATCGATACATTTTTATAAAAAG-ATAGATACTTTCAACATATCAGGTAAATTTTA-CGGTTTTA
** *
237482 TCATAATGAAACTGGTTTTGTCATATTTTTACAAGTTATATTGTAAAGTATCAATCATTTTTATA
64 TCATAATGAAACTGGTTTTGTCATATTTTTACCTGTTATATTGTAAAGTATCGATCATTTTTATA
*
237547 TAAAGGATCGATACTTTCAACATATTAGGTAAATTTTACCGGTTTTGTCATAATAAAACTGGTTT
129 TAAAGGATCGATACTTTCAACATATTAGGTAAATTTTACCAGTTTTGTCATAATAAAACTGGTTT
237612 TATCATATTTTTACCTGTTATATTGTAAAG
194 TATCATATTTTTACCTGTTATATTGTAAAG
* * *
237642 TATCGATACATTTTTATAAAAATGATCGATACTTTCAACATATCCGGTAAATTTTACCGGTTTTG
1 TATCGATACATTTTTATAAAAA-GATAGATACTTTCAACATATCAGGTAAATTTTA-CGGTTTTA
*
237707 TTATAATGAAACTGGTTTTGTCATATTTTTACCTGTTATATTGTAAAGTATCGATACA-TTTT-T
64 TCATAATGAAACTGGTTTTGTCATATTTTTACCTGTTATATTGTAAAGTATCGAT-CATTTTTAT
*
237770 ATAAAGTATCGATACTTT
128 ATAAAGGATCGATACTTT
237788 ATAGACGCTA
Statistics
Matches: 337, Mismatches: 29, Indels: 10
0.90 0.08 0.03
Matches are distributed among these distances:
224 114 0.34
225 213 0.63
226 10 0.03
ACGTcount: A:0.33, C:0.11, G:0.12, T:0.44
Consensus pattern (223 bp):
TATCGATACATTTTTATAAAAAGATAGATACTTTCAACATATCAGGTAAATTTTACGGTTTTATC
ATAATGAAACTGGTTTTGTCATATTTTTACCTGTTATATTGTAAAGTATCGATCATTTTTATATA
AAGGATCGATACTTTCAACATATTAGGTAAATTTTACCAGTTTTGTCATAATAAAACTGGTTTTA
TCATATTTTTACCTGTTATATTGTAAAG
Found at i:238186 original size:87 final size:87
Alignment explanation
Indices: 238040--238216 Score: 293
Period size: 87 Copynumber: 2.0 Consensus size: 87
238030 TTATTATTGC
* * *
238040 TACCTAATATTTTATTGTACTTTATAATGTTTCCAGTAATTAACCTATTTTATTATATAAGCGCT
1 TACCTAATATGTTATTGTACTTGATAATATTTCCAGTAATTAACCTATTTTATTATATAAGCGCT
*
238105 ACCTATTACATTATATAAGTTG
66 ACCTATTACATTATATAAGTGG
*
238127 TACCTAATATGTTATTGTGA-TTGATAATATTTCTAGTAATTAACCTATTTTATTATATAAGCGC
1 TACCTAATATGTTATTGT-ACTTGATAATATTTCCAGTAATTAACCTATTTTATTATATAAGCGC
238191 TACCTATTACATTATATAAGTGG
65 TACCTATTACATTATATAAGTGG
238214 TAC
1 TAC
238217 ATACACTGTG
Statistics
Matches: 84, Mismatches: 5, Indels: 2
0.92 0.05 0.02
Matches are distributed among these distances:
87 83 0.99
88 1 0.01
ACGTcount: A:0.33, C:0.13, G:0.10, T:0.45
Consensus pattern (87 bp):
TACCTAATATGTTATTGTACTTGATAATATTTCCAGTAATTAACCTATTTTATTATATAAGCGCT
ACCTATTACATTATATAAGTGG
Found at i:238751 original size:112 final size:113
Alignment explanation
Indices: 238550--239011 Score: 703
Period size: 112 Copynumber: 4.1 Consensus size: 113
238540 GTATATATAT
* * *
238550 ATTTTTATAAAAAGTATCTATACTTTCAACATATCAGGTAAATTTTACCGGTTTTATCATAATGA
1 ATTTTTATAAAAAGGATCGATACTTTCAACATATCAGGTAAATTTTACCGGTTTTGTCATAATGA
*
238615 AACTGATTTTGTCATATTTGTACCTGTTATATTGTAAAGTATCGAT-C
66 AACTGATTTTGTCATATTTTTACCTGTTATATTGTAAAGTATCGATAC
* * * *
238662 ATTTTTATAAAAAGGTTCGATAATTTCAACATATCAGGTAAATTTTACTGGTTTTGTCATAATAA
1 ATTTTTATAAAAAGGATCGATACTTTCAACATATCAGGTAAATTTTACCGGTTTTGTCATAATGA
* * * *
238727 AATTGGTTTTGTCATATTTTTACCTGTTATATTGTAAAATATCAAT-C
66 AACTGATTTTGTCATATTTTTACCTGTTATATTGTAAAGTATCGATAC
* ** *
238774 ATTTTTATAAAAATGATCGATACTTTCAACATATCAGGTAAATTTTACTAGTTCTGTCATAATGA
1 ATTTTTATAAAAAGGATCGATACTTTCAACATATCAGGTAAATTTTACCGGTTTTGTCATAATGA
* * *
238839 AACTGATTTTGTCATACTTTTACATGTTATATTTTAAAGTATCGATAC
66 AACTGATTTTGTCATATTTTTACCTGTTATATTGTAAAGTATCGATAC
* *
238887 ATTTTTATAAAAAGGATCGATGCTTTCAACATATCATGTAAATTTTACCGGTTTTGTCATAATGA
1 ATTTTTATAAAAAGGATCGATACTTTCAACATATCAGGTAAATTTTACCGGTTTTGTCATAATGA
*
238952 AACTGGTTTTTGTCATATTTTTACCTGTTATATTGTAAAGTATCGATAC
66 AACT-GATTTTGTCATATTTTTACCTGTTATATTGTAAAGTATCGATAC
239001 ATTTTTATAAA
1 ATTTTTATAAA
239012 GTATAGATAC
Statistics
Matches: 313, Mismatches: 35, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
112 198 0.63
113 64 0.20
114 51 0.16
ACGTcount: A:0.33, C:0.11, G:0.12, T:0.44
Consensus pattern (113 bp):
ATTTTTATAAAAAGGATCGATACTTTCAACATATCAGGTAAATTTTACCGGTTTTGTCATAATGA
AACTGATTTTGTCATATTTTTACCTGTTATATTGTAAAGTATCGATAC
Found at i:239294 original size:21 final size:23
Alignment explanation
Indices: 239267--239316 Score: 82
Period size: 23 Copynumber: 2.2 Consensus size: 23
239257 ACCTATTTTA
*
239267 TTATATAAGCGCTACCTATTACG
1 TTATATAAGCGCTACCTAATACG
*
239290 TTATATAAGCGCTACCTAATATG
1 TTATATAAGCGCTACCTAATACG
239313 TTAT
1 TTAT
239317 TGTGCTTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.32, C:0.18, G:0.12, T:0.38
Consensus pattern (23 bp):
TTATATAAGCGCTACCTAATACG
Found at i:239379 original size:23 final size:23
Alignment explanation
Indices: 239344--239394 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
239334 CCAGTAATTA
**
239344 ACCTATTTTATTATATAAACGCT
1 ACCTATTACATTATATAAACGCT
*
239367 ACCTATTACATTATATAAACGGT
1 ACCTATTACATTATATAAACGCT
239390 ACCTA
1 ACCTA
239395 ATATGTTATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.37, C:0.20, G:0.06, T:0.37
Consensus pattern (23 bp):
ACCTATTACATTATATAAACGCT
Found at i:239397 original size:87 final size:87
Alignment explanation
Indices: 239251--239457 Score: 360
Period size: 87 Copynumber: 2.4 Consensus size: 87
239241 ACAAATTAAA
* *
239251 TAATTAACCTATTTTATTATATAAGCGCTACCTATTACGTTATATAAGCGCTACCTAATATGTTA
1 TAATTAACCTATTTTATTATATAAGCGCTACCTATTACATTATATAAACGCTACCTAATATGTTA
*
239316 TTGTGCTTTATAATGTTTCCAG
66 TTGTGCTTGATAATGTTTCCAG
* *
239338 TAATTAACCTATTTTATTATATAAACGCTACCTATTACATTATATAAACGGTACCTAATATGTTA
1 TAATTAACCTATTTTATTATATAAGCGCTACCTATTACATTATATAAACGCTACCTAATATGTTA
239403 TTGTGCTTGATAATGTTTCCAG
66 TTGTGCTTGATAATGTTTCCAG
*
239425 TAATTAACCTATTTTATTATATAAGCGTTACCT
1 TAATTAACCTATTTTATTATATAAGCGCTACCT
239458 CTGTGGAAAA
Statistics
Matches: 113, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
87 113 1.00
ACGTcount: A:0.32, C:0.15, G:0.10, T:0.43
Consensus pattern (87 bp):
TAATTAACCTATTTTATTATATAAGCGCTACCTATTACATTATATAAACGCTACCTAATATGTTA
TTGTGCTTGATAATGTTTCCAG
Found at i:239995 original size:111 final size:113
Alignment explanation
Indices: 239774--240070 Score: 449
Period size: 111 Copynumber: 2.7 Consensus size: 113
239764 AACTTTCAAC
* * *
239774 AAAGTATCGATACATTTTTATAAAAAGTAT-ATATACTTTCAACATATCAGGTAAAGTTTACCGG
1 AAAGTATCGATCCATTTTTATAAAAAGGATCA-ATACTTTCAACATATCAGGTAAATTTTACCGG
* *
239838 TTTTGTCATTATCAAACTGATTTTGTCATATTTTTACCTTTTATATTGT
65 TTTTGTCATAATCAAACTGATTTTGTCATATTTTTACCTGTTATATTGT
* * *
239887 AAAGTATCGA-CCATTTTTATTAAAAGGATCAATACTTTAAACATATCAAGTAAATTTTACC-GT
1 AAAGTATCGATCCATTTTTATAAAAAGGATCAATACTTTCAACATATCAGGTAAATTTTACCGGT
* *
239950 TTTGTCATAATGAAACTGGTTTTGTCATATTTTTACCTGTTATATTGT
66 TTTGTCATAATCAAACTGATTTTGTCATATTTTTACCTGTTATATTGT
* *
239998 AAAATATCGATCC-TTTTTATAAAAAGGATCGATACTTTCAACATATCAGGTAAATTTTACCGGT
1 AAAGTATCGATCCATTTTTATAAAAAGGATCAATACTTTCAACATATCAGGTAAATTTTACCGGT
240062 TTTGTCATA
66 TTTGTCATA
240071 TTTTTACCTG
Statistics
Matches: 166, Mismatches: 15, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
111 99 0.60
112 56 0.34
113 11 0.07
ACGTcount: A:0.34, C:0.13, G:0.11, T:0.42
Consensus pattern (113 bp):
AAAGTATCGATCCATTTTTATAAAAAGGATCAATACTTTCAACATATCAGGTAAATTTTACCGGT
TTTGTCATAATCAAACTGATTTTGTCATATTTTTACCTGTTATATTGT
Found at i:240397 original size:23 final size:23
Alignment explanation
Indices: 240349--240398 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
240339 ACATATTTTA
* *
240349 TTATATAAGCGCTATCTATTACG
1 TTATATAAGCGCTACCTAATACG
*
240372 TTATATAAGCGCTACCTAATATG
1 TTATATAAGCGCTACCTAATACG
240395 TTAT
1 TTAT
240399 TGTGTTTGAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.32, C:0.16, G:0.12, T:0.40
Consensus pattern (23 bp):
TTATATAAGCGCTACCTAATACG
Found at i:240570 original size:87 final size:87
Alignment explanation
Indices: 240333--240592 Score: 394
Period size: 88 Copynumber: 3.0 Consensus size: 87
240323 ACAAATTAAA
* * * *
240333 TAATTAACATATTTTATTATATAAGCGCTATCTATTACGTTATATAAGCGCTACCTAATATGTTA
1 TAATTAACCTATTTTATTATATAAGCGCTACCTATTACATTATATAAGCGGTACCTAATATGTTA
240398 TTGTGTTTGATAATGTTTCCAG
66 TTGTGTTTGATAATGTTTCCAG
* * **
240420 TAATTAAACTATTTTTATTATATAAACGCTACCTATTACATTATATAAGTTGTACCTAATATGTT
1 TAATTAACCTA-TTTTATTATATAAGCGCTACCTATTACATTATATAAGCGGTACCTAATATGTT
* *
240485 ATTGTGTTTGATAATATTTCTAG
65 ATTGTGTTTGATAATGTTTCCAG
* *
240508 TAATTAACCTATTTTATTATATAAGCGCTACCTATCACATTATATAAGCGGTATCTAATATGTTA
1 TAATTAACCTATTTTATTATATAAGCGCTACCTATTACATTATATAAGCGGTACCTAATATGTTA
*
240573 TTGTGCTTGATAATGTTTCC
66 TTGTGTTTGATAATGTTTCC
240593 GGTTAAATGA
Statistics
Matches: 153, Mismatches: 19, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
87 75 0.49
88 78 0.51
ACGTcount: A:0.32, C:0.13, G:0.11, T:0.44
Consensus pattern (87 bp):
TAATTAACCTATTTTATTATATAAGCGCTACCTATTACATTATATAAGCGGTACCTAATATGTTA
TTGTGTTTGATAATGTTTCCAG
Found at i:244205 original size:14 final size:14
Alignment explanation
Indices: 244186--244213 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
244176 CTCAACCATG
244186 TCATATCTGTGTAT
1 TCATATCTGTGTAT
244200 TCATATCTGTGTAT
1 TCATATCTGTGTAT
244214 CACTTCATCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.14, G:0.14, T:0.50
Consensus pattern (14 bp):
TCATATCTGTGTAT
Found at i:250536 original size:17 final size:17
Alignment explanation
Indices: 250496--250536 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
250486 AAAAAAAAAG
*
250496 TTGA-ACATATCCATGT
1 TTGACACATACCCATGT
250512 TCTGACACATACCCATGT
1 T-TGACACATACCCATGT
250530 TTGACAC
1 TTGACAC
250537 TTACACCCAG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 1 0.05
17 9 0.41
18 12 0.55
ACGTcount: A:0.29, C:0.27, G:0.12, T:0.32
Consensus pattern (17 bp):
TTGACACATACCCATGT
Found at i:250880 original size:22 final size:22
Alignment explanation
Indices: 250854--250897 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
250844 ATGCTCTAAA
250854 ATTCTAAACATCTAAAGATTGT
1 ATTCTAAACATCTAAAGATTGT
250876 ATTCTAAACATCTAAAGATTGT
1 ATTCTAAACATCTAAAGATTGT
250898 GAACAGGTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.41, C:0.14, G:0.09, T:0.36
Consensus pattern (22 bp):
ATTCTAAACATCTAAAGATTGT
Found at i:252664 original size:22 final size:23
Alignment explanation
Indices: 252637--252682 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 23
252627 TAATTTAATT
252637 TTAG-AAACACTACATATTTAAG
1 TTAGAAAACACTACATATTTAAG
252659 TTAGAAAAACACTACATATTTAAG
1 TTAG-AAAACACTACATATTTAAG
252683 ACTATTTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
22 4 0.18
24 18 0.82
ACGTcount: A:0.48, C:0.13, G:0.09, T:0.30
Consensus pattern (23 bp):
TTAGAAAACACTACATATTTAAG
Done.