Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002568.1 Hibiscus syriacus cultivar Beakdansim tig00005211_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59464

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10--395
179
2.2
179
86
5
538
40
14
17
27
1.88
2163--2206
21
2.1
21
95
0
79
40
11
34
13
1.81
2239--2305
33
2.0
33
97
0
125
29
0
46
23
1.53
2488--2525
18
2.1
18
100
0
76
57
0
36
5
1.21
3853--3916
23
2.8
23
85
0
92
31
26
25
17
1.97
4604--4688
2
42.0
2
95
2
152
50
1
0
48
1.08
7485--7536
23
2.4
22
83
6
70
28
25
21
25
1.99
7508--7805
146
2.0
146
90
3
467
35
21
15
26
1.94
10072--10108
14
2.6
14
100
0
74
54
16
8
21
1.68
12535--12832
147
2.0
146
89
3
456
36
21
15
26
1.93
18447--18506
23
2.6
23
83
0
75
30
25
25
20
1.99
19259--19306
2
24.0
2
93
0
78
52
2
0
45
1.12
19252--19306
18
3.1
18
94
0
92
52
3
0
43
1.18
20248--20317
34
2.1
32
86
5
95
22
30
15
31
1.95
20737--20812
21
3.7
21
94
1
127
22
19
35
22
1.96
20892--20949
30
2.0
29
90
10
91
44
17
5
32
1.70
20892--20952
29
2.0
30
93
6
106
42
16
6
34
1.74
22968--23037
34
2.1
32
84
5
86
24
28
15
31
1.96
23458--23533
21
3.7
21
91
1
118
23
19
34
22
1.97
23602--23664
30
2.1
29
85
11
83
49
12
6
31
1.66
23613--23672
29
2.0
29
90
6
93
43
15
6
35
1.72
25699--25747
19
2.6
19
96
0
89
32
2
10
55
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26100--26823
200
3.6
199
87
1
1038
37
13
17
31
1.89
26735--26915
96
1.9
95
87
3
265
39
12
15
32
1.85
29981--30017
18
2.1
18
89
0
56
32
5
10
51
1.60
29973--30025
24
2.2
24
86
0
70
35
3
13
47
1.61
30251--31022
200
3.9
199
81
6
855
39
13
14
31
1.85
33829--33870
21
2.0
21
90
0
66
23
19
28
28
1.98
33899--33938
20
1.9
21
85
10
55
37
37
10
15
1.80
34153--34222
34
2.1
32
86
5
95
32
15
28
22
1.95
35575--36097
200
2.6
196
84
5
667
39
13
14
31
1.86
36182--36226
23
2.0
23
90
0
72
40
17
8
33
1.81
37092--37613
200
2.6
196
83
5
647
39
13
14
31
1.85
37698--37742
23
2.0
23
86
0
63
40
15
8
35
1.79
39373--39426
19
2.8
19
85
0
72
31
0
1
66
1.02
39366--39426
22
2.7
22
84
2
77
29
0
3
67
1.07
39374--39426
3
19.0
3
81
14
60
32
0
1
66
1.03
39891--39921
16
1.9
16
93
0
53
74
9
16
0
1.07
40968--41201
119
2.0
118
81
5
278
38
6
6
47
1.57
43435--43473
14
2.8
14
81
14
53
30
12
5
51
1.62
43546--43574
12
2.3
13
94
5
51
27
13
6
51
1.66
45564--45603
15
2.6
16
88
4
64
85
0
7
7
0.76
51270--51434
77
2.2
73
85
4
231
26
21
22
30
1.99
51497--52248
113
6.7
113
88
2
1045
37
15
19
27
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52590--52647
3
19.3
3
77
19
50
31
0
1
67
1.01
54166--54390
113
2.0
113
81
8
262
36
8
8
46
1.66

Tables:   1

The End!