Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002569.1 Hibiscus syriacus cultivar Beakdansim tig00005212_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68681

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
297--382
32
2.8
32
77
10
88
31
17
13
37
1.89
1996--2049
2
27.0
2
100
0
108
0
50
0
50
1.00
11919--11986
36
1.9
36
94
5
122
20
25
33
20
1.97
15294--15342
2
24.5
2
100
0
98
48
0
0
51
1.00
18009--18078
35
2.0
36
91
2
115
21
28
31
18
1.97
24750--25040
4
72.8
4
99
0
573
50
24
0
25
1.50
34167--34299
23
5.7
23
88
1
167
30
15
13
40
1.85
34167--34299
47
2.9
46
84
2
176
30
15
13
40
1.85
35109--35143
17
2.1
17
100
0
70
42
0
57
0
0.99
44116--44207
3
30.7
3
82
12
100
35
2
1
60
1.16
44116--44207
28
3.4
27
81
12
109
35
2
1
60
1.16
44673--44755
3
27.7
3
76
13
73
34
3
2
59
1.28
44675--44755
19
4.5
17
78
15
83
34
3
2
59
1.29
44678--44755
22
3.4
22
75
12
77
34
3
2
58
1.30
46752--46809
21
2.7
21
82
10
64
29
22
22
25
1.99
47780--47889
40
2.8
40
72
15
118
37
18
22
21
1.94
52583--52630
24
2.0
24
95
0
87
39
18
8
33
1.81
53987--54031
13
3.5
13
81
3
56
53
0
0
46
1.00
53982--54039
26
2.3
26
85
8
84
55
0
0
44
0.99
58453--58524
3
24.0
3
100
0
144
66
0
0
33
0.92
58740--58827
6
14.7
6
100
0
176
67
15
0
17
1.24
62613--62659
24
2.0
24
82
0
58
27
19
21
31
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68047--68113
23
3.0
23
78
4
75
28
26
23
20
1.99

Tables:   1

The End!