genome.fa.s257.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000257.1 Hibiscus syriacus cultivar Beakdansim tig00000470_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89565

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
897--947	25	2.0	25	85	7	68	31	5	9	52	1.58
897--947	26	2.0	25	88	3	75	31	5	9	52	1.58
3246--3293	24	2.0	24	84	12	62	39	2	0	58	1.10
7595--7655	31	2.0	31	93	0	104	27	4	26	40	1.76
8301--8364	32	2.0	32	81	0	74	34	18	23	23	1.96
11044--11918	84	10.4	84	81	4	897	25	17	22	34	1.96
11044--11918	169	5.2	169	83	4	896	25	17	22	34	1.96
11052--11918	253	3.4	252	83	4	959	25	17	22	34	1.96
13779--13948	86	2.0	86	83	0	214	24	17	22	36	1.94
14789--14990	96	2.1	96	88	4	318	31	18	16	33	1.93
22135--22184	21	2.3	22	75	6	57	42	2	26	30	1.66
23816--23941	61	2.1	60	95	1	207	37	16	16	29	1.91
23831--23926	30	3.2	30	65	18	81	36	14	17	31	1.90
23852--23947	30	3.2	30	64	11	79	37	13	16	32	1.88
25383--25700	87	3.7	85	78	7	197	28	14	5	51	1.63
25434--25885	43	10.5	43	76	8	343	27	17	5	50	1.66
25434--25885	87	5.3	85	76	5	365	27	17	5	50	1.66
25426--25885	130	3.6	127	77	6	401	27	16	5	51	1.65
34729--34779	20	2.5	20	90	0	75	23	7	11	56	1.61
34878--34998	64	1.9	64	100	0	242	47	10	5	35	1.62
35145--35169	2	12.5	2	100	0	50	48	0	0	52	1.00
35736--35775	19	2.1	19	95	0	71	47	10	0	42	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35860--35924	29	2.2	29	78	5	69	30	9	18	41	1.82
35971--36012	22	1.9	22	85	0	57	16	7	4	71	1.26
39817--40032	41	5.4	42	80	6	173	37	16	17	29	1.91
39817--40051	40	5.9	38	80	7	166	35	15	17	31	1.91
39816--40051	122	2.0	121	81	5	280	35	15	17	31	1.91
41051--41112	2	31.0	2	100	0	124	50	0	0	50	1.00
45678--45829	23	7.2	20	83	10	144	40	13	14	31	1.84
45684--45819	23	6.2	23	81	13	169	41	13	14	30	1.84
47053--47097	23	1.9	24	86	4	65	40	4	8	46	1.55
48325--48392	20	3.2	20	73	18	66	39	13	16	30	1.86
51593--51744	23	6.8	23	88	4	204	17	19	26	36	1.94
51593--51767	46	3.9	46	81	4	196	19	18	25	36	1.94
54422--54474	19	2.8	18	83	16	72	37	0	9	52	1.34
56920--56950	16	1.9	16	100	0	62	38	19	9	32	1.84
64466--64770	38	8.6	37	70	20	149	47	1	6	44	1.38
64504--64560	23	2.4	23	85	5	78	47	0	7	45	1.30
64504--64560	25	2.4	24	91	5	89	47	0	7	45	1.30
64466--64603	62	2.2	62	86	10	183	48	1	5	44	1.35
64529--64790	38	7.1	37	80	11	238	45	1	8	45	1.40
64789--64835	22	2.2	21	84	3	58	25	0	2	72	0.96
65603--65636	13	2.6	13	95	0	59	2	20	26	50	1.63
66186--66259	5	15.0	5	75	20	59	18	1	1	78	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66179--66302	6	19.2	6	77	19	60	20	2	0	76	0.95
66197--66258	20	3.2	18	82	17	72	17	1	0	80	0.79
66178--66292	51	2.2	52	78	18	125	19	2	0	77	0.94
66186--66302	33	3.5	34	76	12	91	21	1	0	76	0.94
66253--66282	8	3.8	8	100	0	60	33	0	0	66	0.92
66240--66308	37	1.9	37	83	16	92	24	1	0	73	0.91
66380--66408	12	2.3	13	94	5	51	31	0	0	68	0.89
67337--67374	16	2.3	16	83	16	51	7	10	2	78	1.04
69157--69212	2	28.0	2	100	0	112	50	0	0	50	1.00
70749--70792	22	2.0	22	95	0	79	34	0	15	50	1.45
73294--73331	2	19.0	2	100	0	76	50	0	0	50	1.00
76698--76898	102	2.0	101	89	2	305	30	25	17	25	1.97
81454--81506	4	13.0	4	78	11	54	22	1	3	71	1.12
81474--81507	13	2.6	14	86	13	54	20	2	0	76	0.92
81474--81506	17	1.9	17	93	0	57	21	3	0	75	0.93
81896--81990	4	23.2	4	83	14	115	25	1	0	73	0.90
81896--82014	8	14.9	7	78	19	62	22	2	0	73	1.00
81896--82014	12	9.5	13	77	17	94	22	2	0	73	1.00
82125--82153	12	2.3	13	94	5	51	27	3	0	68	1.05
85030--85116	18	5.1	16	76	16	77	79	3	16	1	0.93
85030--85116	9	8.9	9	75	15	68	79	3	16	1	0.93
85037--85117	17	4.7	17	76	15	62	79	2	17	1	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86663--86733	36	2.0	36	88	0	106	25	21	14	39	1.90
87068--87593	106	5.0	106	86	3	733	34	25	18	21	1.96
89297--89353	18	3.2	18	80	2	53	22	1	3	71	1.10

Tables:   1

The End!