genome.fa.s2570.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002570.1 Hibiscus syriacus cultivar Beakdansim tig00005213_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  126710

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95--141	18	2.6	18	90	6	60	40	4	29	25	1.75
111--174	16	3.8	17	89	6	94	34	9	29	26	1.88
547--1073	231	2.3	227	81	12	631	41	18	11	28	1.85
7907--7991	31	2.7	32	78	7	84	42	0	37	20	1.52
13264--13304	18	2.2	19	83	12	50	41	0	14	43	1.45
14210--14253	2	22.0	2	100	0	88	50	0	0	50	1.00
20494--20533	18	2.2	18	90	0	62	25	22	30	22	1.99
40030--40055	13	2.0	13	100	0	52	46	15	7	30	1.74
40083--40147	32	2.1	30	83	11	78	44	3	0	52	1.16
40083--40147	31	2.1	32	83	11	82	44	3	0	52	1.16
40122--40199	39	2.0	38	82	9	95	51	0	3	44	1.19
40334--40375	19	2.2	19	86	4	57	26	0	16	57	1.40
40969--41033	29	2.2	29	91	0	103	18	35	24	21	1.96
41223--41299	29	2.7	29	89	0	118	22	25	33	18	1.96
44830--44877	14	3.4	14	82	5	60	52	2	16	29	1.56
44823--44878	29	1.9	29	88	0	85	50	3	16	30	1.62
45055--45111	25	2.3	25	76	14	64	47	0	5	47	1.24
45098--45124	13	2.1	13	100	0	54	40	0	0	59	0.98
46454--46489	17	2.1	17	94	0	63	13	8	11	66	1.44
46800--46843	5	8.8	5	100	0	88	61	18	0	20	1.35
46856--46903	22	2.1	23	88	7	71	37	12	4	45	1.61
48600--48690	33	2.8	32	78	5	101	46	8	2	42	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53698--53796	42	2.4	41	84	3	126	26	22	25	26	2.00
53909--54009	42	2.4	41	79	6	114	27	21	25	24	1.99
53669--54853	214	5.5	214	96	0	2113	29	20	17	32	1.96
54337--54438	42	2.5	40	80	6	114	27	22	24	25	2.00
54551--54652	42	2.5	41	79	6	116	28	21	24	25	1.99
54765--54851	42	2.1	41	80	6	95	28	20	22	27	1.99
57019--57063	5	8.2	5	83	16	54	0	24	0	75	0.80
57019--57063	11	4.1	11	83	8	56	0	24	0	75	0.80
57019--57063	17	2.7	16	86	10	63	0	24	0	75	0.80
57019--57063	22	2.0	22	87	8	65	0	24	0	75	0.80
57020--57083	25	2.7	23	81	11	76	3	26	0	70	1.02
59635--59771	21	6.6	21	90	3	161	15	21	21	40	1.90
59638--59771	42	3.2	42	89	1	180	15	22	20	41	1.90
65749--65807	29	2.0	29	96	0	109	44	13	18	23	1.86
67667--67967	79	3.8	79	82	0	368	29	23	10	36	1.89
67667--67967	158	1.9	158	91	0	494	29	23	10	36	1.89
75388--75413	3	8.7	3	100	0	52	34	0	65	0	0.93
90708--91658	120	8.0	120	82	2	1083	23	24	16	35	1.95
99200--99238	18	2.2	18	100	0	78	28	30	0	41	1.57
108607--108681	29	2.5	30	80	12	91	40	37	4	18	1.70
112523--112548	3	8.7	3	100	0	52	0	34	30	34	1.58
114578--114635	29	1.9	31	93	6	102	67	5	0	27	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
117643--117710	32	2.1	33	86	8	95	32	27	7	32	1.84
118451--118532	41	2.0	41	82	4	101	47	10	4	36	1.60
119139--119195	25	2.3	23	77	16	60	49	3	5	42	1.42
119153--119200	25	1.9	25	95	0	87	47	2	4	45	1.33
119186--119216	12	2.5	13	89	10	55	48	0	0	51	1.00
119162--119250	16	5.1	16	70	25	56	42	0	2	55	1.12
124000--124033	2	17.0	2	100	0	68	50	0	0	50	1.00

Tables:   1

The End!