Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002571.1 Hibiscus syriacus cultivar Beakdansim tig00005214_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81277

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3577--3724
76
2.0
75
90
4
235
29
2
10
58
1.45
11859--12053
67
2.7
72
84
10
206
27
2
11
58
1.43
14925--14952
12
2.3
12
100
0
56
42
17
17
21
1.89
18835--18859
2
12.5
2
100
0
50
52
0
0
48
1.00
19131--19164
17
1.9
17
94
5
59
58
0
2
38
1.13
20783--20834
15
3.5
15
79
7
52
15
19
13
51
1.75
20799--20953
15
10.4
15
74
4
116
16
12
16
54
1.72
23116--23192
34
2.2
35
90
4
120
25
9
18
46
1.78
23204--23273
36
2.0
35
94
2
122
42
1
2
52
1.24
23511--23540
2
15.0
2
100
0
60
50
0
0
50
1.00
29802--29970
44
3.9
44
85
2
243
46
21
9
21
1.79
32013--32327
157
2.0
159
94
2
553
30
5
10
53
1.56
33021--33060
21
1.9
21
90
10
64
45
0
2
52
1.14
42518--42557
20
2.0
20
85
0
53
57
0
5
37
1.21
45130--45173
21
2.1
21
100
0
88
34
13
29
22
1.93
55910--55965
25
2.2
25
100
0
112
39
7
14
39
1.73
55729--56147
207
2.0
207
95
0
757
41
13
16
29
1.86
55935--56327
182
2.2
182
92
0
651
40
13
17
27
1.87
58140--58183
21
2.1
21
95
0
79
40
11
34
13
1.81
58216--58282
33
2.0
33
97
0
125
29
0
46
23
1.53
58467--58504
18
2.1
18
100
0
76
57
0
36
5
1.21
59864--59927
23
2.8
23
85
0
92
31
26
25
17
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60624--60691
2
34.0
2
94
5
120
48
1
0
50
1.10
62931--62963
16
2.0
17
94
5
59
36
24
12
27
1.91
63271--63326
21
2.7
21
80
5
60
30
16
1
51
1.54
63288--63331
21
2.1
21
83
8
54
34
18
0
47
1.49
63505--63556
23
2.4
22
83
6
70
28
25
21
25
1.99
63528--63830
149
2.0
148
92
0
498
35
22
15
26
1.94
68325--68380
21
2.7
21
80
5
60
30
16
1
51
1.54
68342--68385
21
2.1
21
83
8
54
34
18
0
47
1.49
68583--68884
149
2.0
148
90
0
478
36
21
15
26
1.93
74540--74599
23
2.6
23
83
0
75
30
25
25
20
1.99
75352--75394
2
22.0
2
95
4
79
48
0
0
51
1.00
76334--76403
34
2.1
32
86
5
95
22
30
15
31
1.95
76824--76899
21
3.7
21
94
1
127
22
19
35
22
1.96
76980--77040
29
2.0
31
93
6
108
42
16
6
34
1.74
79529--79603
20
3.7
21
87
5
109
24
20
34
21
1.96

Tables:   1

The End!