Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002573.1 Hibiscus syriacus cultivar Beakdansim tig00005216_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69652

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7530--7562
15
2.2
15
94
0
57
51
30
3
15
1.58
10049--10086
7
5.7
7
90
3
53
2
39
0
57
1.12
11198--11245
23
2.1
23
84
7
62
12
27
27
33
1.92
11205--11277
24
3.1
24
70
16
71
20
24
23
31
1.98
11813--11847
11
3.2
11
91
0
52
40
17
17
25
1.90
12312--12361
19
2.7
18
87
6
73
50
2
16
32
1.56
12312--12376
19
3.5
18
83
6
58
46
4
18
30
1.69
12398--12457
13
4.7
13
79
4
68
51
0
25
23
1.48
12487--12569
39
2.1
39
93
0
139
24
6
19
50
1.69
14779--14853
25
3.0
25
92
0
123
22
22
21
33
1.97
18319--18369
26
2.0
26
88
7
77
50
0
1
47
1.12
19302--19351
21
2.3
23
74
19
54
42
4
0
54
1.19
20417--20464
3
15.3
3
87
8
53
35
0
2
62
1.07
22322--22355
10
3.4
10
87
0
50
20
5
0
73
1.04
32604--33321
105
6.8
105
96
0
1328
33
25
18
22
1.97
33400--33441
20
2.1
20
95
0
75
26
21
16
35
1.94
33664--33713
21
2.3
23
74
19
54
42
4
0
54
1.19
34780--34812
2
16.5
2
100
0
66
48
0
0
51
1.00
34884--34950
18
3.8
18
76
2
64
23
7
0
68
1.15
34874--34949
36
2.1
35
83
4
98
22
10
0
67
1.21
38162--38211
2
25.0
2
100
0
100
50
0
0
50
1.00
50150--50306
64
2.5
63
79
10
176
26
18
19
35
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52369--52415
13
3.8
13
81
10
55
25
8
25
40
1.84
52372--52415
11
3.7
11
82
11
52
22
9
25
43
1.82
52499--52550
26
2.0
26
100
0
104
30
11
11
46
1.76
58279--58388
22
4.9
22
89
2
148
19
18
17
45
1.86
58288--58373
10
8.0
10
74
14
73
18
17
16
47
1.83
59342--59414
32
2.3
32
95
0
128
28
19
30
21
1.98
62129--62186
21
2.8
21
81
0
80
31
36
20
12
1.89

Tables:   1

The End!