Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002574.1 Hibiscus syriacus cultivar Beakdansim tig00005217_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52093

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4890--4988
50
2.0
50
84
7
130
35
23
21
20
1.96
9625--9676
21
2.5
21
90
3
88
28
15
0
55
1.40
11973--12121
77
1.9
79
82
8
189
39
10
6
43
1.65
24476--24514
21
1.9
20
94
5
69
28
15
25
30
1.96
24558--24616
21
2.8
22
87
5
86
25
18
22
33
1.96
26146--28645
833
3.0
833
99
0
4892
38
7
19
34
1.81
32921--33028
41
2.6
41
85
0
153
37
25
8
29
1.85
32921--33103
41
4.5
41
79
2
145
38
22
8
30
1.84
32921--33126
82
2.5
82
76
5
200
40
21
9
28
1.84
37238--37377
20
6.9
20
81
7
113
30
21
21
26
1.98
37238--37377
40
3.5
40
87
2
183
30
21
21
26
1.98
37235--37377
60
2.4
60
77
8
173
30
21
20
27
1.98
38190--38243
24
2.2
24
93
0
90
20
18
20
40
1.91
38433--38469
14
2.6
14
91
4
56
51
21
21
5
1.68
40504--40538
18
1.9
18
94
0
61
54
25
2
17
1.57
40722--40938
74
2.9
74
90
0
335
37
21
20
19
1.94
40827--41031
54
3.7
54
81
8
223
36
21
19
22
1.95
40717--41031
94
3.4
94
79
6
316
36
21
20
21
1.95
40719--41030
74
4.1
76
84
8
315
36
21
19
21
1.95
40717--41031
20
16.6
20
78
12
272
36
21
20
21
1.95
40832--41065
54
4.2
55
76
11
183
36
21
19
22
1.95
41167--41246
30
2.4
34
80
20
114
55
15
3
26
1.57
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41182--41247
30
2.2
30
100
0
132
54
13
3
28
1.54
42637--42723
21
4.1
21
74
0
84
22
19
36
20
1.95
43160--43215
20
2.8
20
97
0
103
39
23
19
17
1.92
43259--43325
20
3.3
20
85
4
91
17
17
26
37
1.93
45845--45918
20
3.7
20
94
0
121
27
21
27
24
1.99
46883--46907
3
8.3
3
100
0
50
36
0
0
64
0.94

Tables:   1

The End!