genome.fa.s2576.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002576.1 Hibiscus syriacus cultivar Beakdansim tig00005221_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  98619

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8525--8704	60	3.0	60	76	4	150	33	21	4	40	1.73
8831--8946	60	1.9	60	82	6	146	41	3	24	31	1.71
10866--11100	41	5.7	40	72	12	123	33	6	12	47	1.68
10937--11011	24	3.2	24	62	11	64	33	6	10	49	1.64
10933--11026	47	2.0	47	100	0	188	31	6	12	48	1.66
24833--24881	23	2.1	24	88	3	73	40	2	4	53	1.32
42000--42043	6	7.3	6	100	0	88	31	52	0	15	1.44
48454--48585	41	3.2	41	66	19	119	23	28	31	16	1.96
48568--48650	27	3.0	27	62	10	69	28	19	34	16	1.94
48540--48650	55	2.0	55	98	0	213	28	21	33	16	1.95
48538--48626	28	3.2	28	64	9	74	28	25	30	15	1.96
48550--48637	28	3.2	28	63	9	72	26	23	34	15	1.95
48456--48731	139	2.0	139	99	0	543	24	25	32	17	1.97
48595--48724	41	3.1	41	65	20	106	24	26	31	16	1.97
48713--48750	19	2.0	19	100	0	76	21	15	42	21	1.89
48758--48866	29	3.8	29	93	2	175	16	31	30	22	1.96
48872--48931	23	2.6	23	97	0	111	23	45	8	23	1.80
49042--49092	25	2.0	25	92	0	84	29	9	33	27	1.89
49154--49211	4	14.0	4	75	7	53	63	0	34	1	1.04
49153--49184	17	1.9	16	93	6	55	62	0	37	0	0.95
49154--49211	25	2.3	25	96	0	107	63	0	34	1	1.04
49415--49503	44	2.0	47	88	6	139	41	0	12	46	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51846--51878	17	1.9	17	93	0	57	45	12	6	36	1.66
51899--51923	12	2.1	12	100	0	50	32	8	8	52	1.60
53572--53626	16	3.2	16	74	18	56	49	12	0	38	1.41
54102--54185	27	3.0	27	81	6	89	52	13	0	34	1.40
54096--54161	33	1.9	34	82	17	84	54	10	0	34	1.35
54137--54184	21	2.3	20	82	7	60	50	16	0	33	1.46
54592--54773	15	11.4	15	70	18	118	18	52	7	21	1.69
54588--54706	47	2.5	48	88	9	165	19	52	6	21	1.68
54638--54767	16	8.2	16	71	14	90	16	53	7	22	1.69
54661--54781	33	3.7	33	84	12	178	16	52	9	22	1.72
54661--54786	64	1.9	65	95	3	227	16	50	9	23	1.75
54807--54848	18	2.3	18	95	0	75	16	23	23	35	1.95
54870--54987	29	4.1	29	100	0	236	17	37	31	13	1.89
61611--61650	20	2.0	20	100	0	80	40	35	0	25	1.56
62751--62955	69	3.0	69	86	1	279	30	7	16	45	1.74
69562--69624	22	2.8	22	85	4	81	36	14	26	22	1.92
70064--70098	2	17.5	2	100	0	70	51	0	0	48	1.00
70385--70419	18	1.9	18	94	0	61	28	31	22	17	1.96
79435--79459	5	5.0	5	100	0	50	0	20	0	80	0.72
84046--84192	60	2.5	60	76	6	154	34	14	16	35	1.89
88955--88994	15	2.7	15	84	0	62	30	17	35	17	1.93

Tables:   1

The End!