genome.fa.s2577.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002577.1 Hibiscus syriacus cultivar Beakdansim tig00005222_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  118497

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
636--693	23	2.5	23	97	0	107	37	17	10	34	1.84
545--773	106	2.2	105	85	7	304	35	14	10	39	1.80
660--865	83	2.5	82	87	5	306	34	12	12	40	1.80
537--910	189	2.0	190	90	3	594	34	13	11	40	1.81
830--888	22	2.7	23	89	7	95	35	20	11	32	1.89
4966--5014	20	2.5	20	93	3	82	20	22	26	30	1.98
10826--10865	19	2.1	19	85	0	53	47	15	2	35	1.58
32166--32225	24	2.6	24	79	12	63	65	1	5	28	1.23
32197--32234	16	2.4	16	82	4	51	63	0	5	31	1.17
32944--33035	35	2.6	37	84	5	109	31	13	16	39	1.86
33496--33843	106	3.3	103	82	6	389	22	20	23	33	1.97
34405--34470	33	2.0	33	82	5	80	36	15	18	30	1.91
34447--34899	65	6.7	65	72	11	293	37	11	20	30	1.87
34579--34840	36	7.4	36	77	9	254	39	13	19	27	1.89
34579--34834	37	7.3	36	75	11	190	39	13	18	28	1.89
34531--34899	137	2.7	137	83	1	461	38	12	19	29	1.88
34721--34840	35	3.3	35	88	5	177	40	12	20	25	1.88
35262--35297	18	2.0	18	88	0	54	41	30	8	19	1.81
36383--36469	10	8.2	10	70	22	54	0	13	5	80	0.88
36385--36463	16	4.9	16	71	18	65	0	12	6	81	0.88
37575--37613	8	5.0	8	84	6	53	58	12	17	10	1.61
37575--37613	15	2.5	15	87	4	51	58	12	17	10	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38941--38968	5	5.6	5	100	0	56	82	0	0	17	0.68
40756--40810	22	2.5	22	100	0	110	36	27	12	23	1.91
41215--41250	18	2.0	18	88	0	54	19	8	30	41	1.81
41672--41802	37	3.6	37	85	6	178	28	19	12	40	1.87
41672--41791	35	3.3	35	86	5	168	26	20	12	40	1.88
41723--41782	20	3.2	20	64	22	58	23	18	13	45	1.84
41810--41933	36	3.4	36	79	7	144	26	19	14	39	1.90
41613--41996	137	2.8	138	81	3	459	30	19	11	38	1.88
41889--42048	65	2.4	67	86	3	207	33	21	8	36	1.83
42669--43016	106	3.3	103	81	6	387	33	23	19	22	1.97
43477--43576	35	2.7	35	84	6	110	39	15	15	31	1.87
44053--44095	15	2.7	15	78	7	50	37	2	0	60	1.10
44277--44329	24	2.2	25	77	16	58	33	3	0	62	1.13
44284--44321	16	2.4	16	86	4	51	34	5	0	60	1.19
44302--44352	21	2.4	22	80	3	59	27	3	1	66	1.20
60481--60527	19	2.5	19	100	0	94	29	17	6	46	1.72
63021--63095	25	3.0	24	75	16	82	54	10	13	21	1.68
64026--64074	17	2.9	16	82	11	62	18	4	34	42	1.69
64026--64073	16	2.9	16	87	9	69	18	4	35	41	1.70
64840--64885	17	2.7	17	100	0	92	36	10	0	52	1.37
66705--66796	48	2.0	45	87	10	132	51	7	4	36	1.51
69158--69235	38	2.1	38	100	0	156	25	25	10	38	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71494--71670	88	2.0	89	96	3	331	15	23	14	46	1.82
73958--74048	46	2.0	45	97	2	173	24	19	26	29	1.98
82205--82346	71	2.0	70	98	1	275	21	30	19	28	1.97
89445--89485	19	2.1	19	90	4	64	46	4	14	34	1.66
99723--99771	12	3.8	13	78	10	55	34	0	0	65	0.93
99747--99773	14	1.9	14	100	0	54	29	0	0	70	0.88
100595--100639	20	2.2	21	88	4	65	40	2	0	57	1.11
100516--100691	80	2.2	80	91	1	291	46	2	3	47	1.31

Tables:   1

The End!