genome.fa.s2578.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002578.1 Hibiscus syriacus cultivar Beakdansim tig00005223_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53604

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
624--1102	21	23.2	20	73	15	331	34	24	19	21	1.96
627--1103	42	11.5	42	83	9	472	35	24	19	20	1.96
652--1094	63	7.1	63	83	9	563	34	25	19	20	1.96
627--1103	249	1.9	247	91	3	778	35	24	19	20	1.96
3200--3234	15	2.3	15	95	0	61	45	2	42	8	1.49
3197--3231	18	1.9	18	88	0	52	45	2	42	8	1.49
10479--10526	23	2.0	23	84	8	60	39	4	2	54	1.32
17783--17899	38	3.1	37	68	14	96	33	17	10	39	1.83
17759--17883	36	3.4	37	72	10	130	33	15	11	40	1.82
17756--17912	74	2.1	74	94	2	271	31	15	10	42	1.81
17807--17913	36	2.9	36	71	6	108	32	14	11	41	1.82
17938--18007	21	3.6	21	67	21	62	25	24	12	37	1.91
17922--18022	36	2.8	36	92	1	159	23	24	14	36	1.93
17964--18034	15	4.3	15	69	19	52	21	28	15	35	1.94
18013--18091	39	2.0	39	92	0	131	29	20	15	35	1.93
18312--18425	42	2.7	40	80	9	113	28	21	21	28	1.99
18616--18724	36	3.0	36	82	1	119	27	19	13	39	1.89
19106--19955	91	9.4	91	89	2	1293	37	15	22	25	1.93
19391--19454	20	3.3	19	67	20	51	42	12	21	23	1.87
19520--20098	143	4.1	143	69	17	478	37	15	21	25	1.93
19879--20007	52	2.5	52	92	1	204	35	16	20	27	1.94
19697--20145	234	1.9	235	91	1	731	38	16	20	24	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19211--20046	273	3.1	258	80	13	710	37	15	22	24	1.93
19932--20145	91	2.4	91	93	0	358	40	14	21	23	1.90
29998--30034	19	2.0	19	89	5	58	18	29	24	27	1.98
33857--33943	35	2.5	34	78	12	88	56	10	6	26	1.58
34155--34201	6	7.8	6	87	0	58	14	31	17	36	1.90
36241--36280	20	2.0	20	90	0	62	62	2	0	35	1.09
48614--48643	15	1.9	16	93	6	53	26	0	0	73	0.84

Tables:   1

The End!