Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01002579.1 Hibiscus syriacus cultivar Beakdansim tig00005224_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111001
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Found at i:14033 original size:76 final size:76
Alignment explanation
Indices: 13907--14057 Score: 284
Period size: 76 Copynumber: 2.0 Consensus size: 76
13897 TTAAGGAATC
13907 TAATCTTTTAACCCTAATATTAGGTTTACAACCTATTACAAACAGTAGCCTAAACCTATGGCCCA
1 TAATCTTTTAACCCTAATATTAGGTTTACAACCTATTACAAACAGTAGCCTAAACCTATGGCCCA
13972 ACTACAATACT
66 ACTACAATACT
* *
13983 TAATCTTTTAACCCTAATATTAGGTTTATAACCTATTACAAATAGTAGCCTAAACCTATGGCCCA
1 TAATCTTTTAACCCTAATATTAGGTTTACAACCTATTACAAACAGTAGCCTAAACCTATGGCCCA
14048 ACTACAATAC
66 ACTACAATAC
14058 CTATAGCCCA
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
76 73 1.00
ACGTcount: A:0.37, C:0.24, G:0.08, T:0.31
Consensus pattern (76 bp):
TAATCTTTTAACCCTAATATTAGGTTTACAACCTATTACAAACAGTAGCCTAAACCTATGGCCCA
ACTACAATACT
Found at i:14061 original size:20 final size:20
Alignment explanation
Indices: 14036--14081 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
14026 AGTAGCCTAA
*
14036 ACCTATGGCCCAACTACAAT
1 ACCTATAGCCCAACTACAAT
14056 ACCTATAGCCCAACTACAAT
1 ACCTATAGCCCAACTACAAT
14076 ACCTAT
1 ACCTAT
14082 TTATTTAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.37, C:0.35, G:0.07, T:0.22
Consensus pattern (20 bp):
ACCTATAGCCCAACTACAAT
Found at i:14097 original size:26 final size:26
Alignment explanation
Indices: 14061--14114 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
14051 ACAATACCTA
14061 TAGCCCAACTACAATACCTATTTATT
1 TAGCCCAACTACAATACCTATTTATT
*
14087 TAGCCCAACTACGATACCTATTTATT
1 TAGCCCAACTACAATACCTATTTATT
14113 TA
1 TA
14115 TAAAAAGGCC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.33, C:0.26, G:0.06, T:0.35
Consensus pattern (26 bp):
TAGCCCAACTACAATACCTATTTATT
Found at i:14757 original size:17 final size:17
Alignment explanation
Indices: 14735--14773 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
14725 TACAACTCAT
*
14735 TTTAAATTAGATAACAA
1 TTTAAATCAGATAACAA
* *
14752 TTTAAATCATATAAGAA
1 TTTAAATCAGATAACAA
14769 TTTAA
1 TTTAA
14774 TCTAAACCAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.51, C:0.05, G:0.05, T:0.38
Consensus pattern (17 bp):
TTTAAATCAGATAACAA
Found at i:14910 original size:12 final size:12
Alignment explanation
Indices: 14894--14934 Score: 64
Period size: 12 Copynumber: 3.4 Consensus size: 12
14884 TCCGAATAAT
* *
14894 AAATATATTTTT
1 AAATATAATTTA
14906 AAATATAATTTA
1 AAATATAATTTA
14918 AAATATAATTTA
1 AAATATAATTTA
14930 AAATA
1 AAATA
14935 ATCTCATTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (12 bp):
AAATATAATTTA
Found at i:30372 original size:766 final size:766
Alignment explanation
Indices: 28900--38089 Score: 16750
Period size: 766 Copynumber: 12.0 Consensus size: 766
28890 TTACCCAGAA
** * *
28900 AACGTCCCAAGGACAACGACCCTCTCAGCCGTCGCCGCTGTCCGATCAACTTTTCAACTCGACTC
1 AACGTCCTGAGGACAACGACCCTCCCAGCCGTCGCCGCTGTCCGATCAACTTTTCAACTCGGCTC
*
28965 CCCAATCCAGTTCATTCAGATTAGGAGATTCCACTTTCTATTCCCTCGTCAACCATTATGCCCAT
66 CCCAATCCAGTTCTTTCAGATTAGGAGATTCCACTTTCTATTCCCTCGTCAACCATTATGCCCAT
*
29030 ACTGCTGATTTCGTTTCTTTAGATGACATTTTATGTCGGATTCCAAAACCGAGTATTTATTGAGA
131 ACTGCTGATTTCGTTTCTTTAGACGACATTTTATGTCGGATTCCAAAACCGAGTATTTATTGAGA
*
29095 AGTGTTTTCTAGCCATCTGTAAGGCTAATGGGAGAGGCCATTTGCCCGACAAAGCTGTGGATTTA
196 AGTGTTTTCTAGCCATCTGTAAGGCTTATGGGAGAGGCCATTTGCCCGACAAAGCTGTGGATTTA
*
29160 TTCCATAAGGATCCTCATGATTTTTGTTGCATCCCCATTGTTAAGTCCTTTAATTATGTTCTCAA
261 TTCCATAAGGATCCTCATGATTTTCGTTGCATCCCCATTGTTAAGTCCTTTAATTATGTTCTCAA
29225 TGTCATTATAAAAGAGGGTTTCTATCATCGAGCCTTGGACTTCTATAATAGTTTTGTTAATACCA
326 TGTCATTATAAAAGAGGGTTTCTATCATCGAGCCTTGGACTTCTATAATAGTTTTGTTAATACCA
* * *
29290 AGAACATCAATATTTCTCCAAATATGTTCTCTTTTAATATGCTTTTCAAGGCCATGTGTAAGTTT
391 AGAACATCAATATTTCTCCAAATATGTTCTCTTTTAATCTGCTTCTCAAGGCCATGTGTAAGTTG
29355 GGATGGGTCGATCGTGCAGTTGAGGTGTTCAAAGAAATGCCTGAGAGAAAATGTCCGCCCGATGT
456 GGATGGGTCGATCGTGCAGTTGAGGTGTTCAAAGAAATGCCTGAGAGAAAATGTCCGCCCGATGT
29420 CTATACTTACTGTACATTGATGGATGGATTGTGCAAGGAGGACAGGATTGATGAGGCTGTTTCCT
521 CTATACTTACTGTACATTGATGGATGGATTGTGCAAGGAGGACAGGATTGATGAGGCTGTTTCCT
* * *
29485 TGTTGGACGAAATGCAAACAGATGGTTGCGTCCCTTCCCCTGTTATTTTCAATGTATTGATTAAC
586 TGTTGGACGAAATGCAAACTGATGGTTGCTTCCCTTCCCCTGTTACTTTCAATGTATTGATTAAC
*
29550 GGGTTATGCAAAAAGGGTGACTTAGCTCGCGCAGCAAAGTTAGTGGACAATATGTTTCTCGAAGG
651 GGGTTATGCAAAAAGGGTGACTTGGCTCGCGCAGCAAAGTTAGTGGACAATATGTTTCTCGAAGG
*
29615 TTGTTGTCATAACCAAGTTACTTGTAATACACTCATCCATGGTTTATGTAT
716 TTGTTGTCATAACCAAGTTACTTGTAATACACTCATCCATGGTTTGTGTAT
* * *
29666 AACGTCCTGAGAACAACGACCCTCCCAGCCGTCGCCGCTGTCCGATCAACTTTTTAACTAGGCTC
1 AACGTCCTGAGGACAACGACCCTCCCAGCCGTCGCCGCTGTCCGATCAACTTTTCAACTCGGCTC
*
29731 CCCAATCCAGTTCTTTCAGATTAGGAGATTCCACTTTCTATTCCCTCGTCTACCATTATGCCCAT
66 CCCAATCCAGTTCTTTCAGATTAGGAGATTCCACTTTCTATTCCCTCGTCAACCATTATGCCCAT
*
29796 ACTGTTGATTTCGTTTCTTTAGACGACATTTTATGTCGGATTCCAAAACCGAGTATTTATTGAGA
131 ACTGCTGATTTCGTTTCTTTAGACGACATTTTATGTCGGATTCCAAAACCGAGTATTTATTGAGA
29861 AGTGTTTTCTAGCCATCTGTAAGGCTTATGGGAGAGGCCATTTGCCCGACAAAGCTGTGGATTTA
196 AGTGTTTTCTAGCCATCTGTAAGGCTTATGGGAGAGGCCATTTGCCCGACAAAGCTGTGGATTTA
* *
29926 TTCCATAAGGATCCTCATGATTTTCGTTGCATCCCCATTGTTAAGTCATTTAATTTTGTTCTCAA
261 TTCCATAAGGATCCTCATGATTTTCGTTGCATCCCCATTGTTAAGTCCTTTAATTATGTTCTCAA
*
29991 TGTCATTATAAAAGAGGGTTTCTATCATCGAGCCTTGGACTTCTATAATAGTTTTGTTAATAACA
326 TGTCATTATAAAAGAGGGTTTCTATCATCGAGCCTTGGACTTCTATAATAGTTTTGTTAATACCA
30056 AGAACATCAATATTTCTCCAAATATGTTCTCTTTTAATCTGCTTCTCAAGGCCATGTGTAAGTTG
391 AGAACATCAATATTTCTCCAAATATGTTCTCTTTTAATCTGCTTCTCAAGGCCATGTGTAAGTTG
30121 GGATGGGTCGATCGTGCAGTTGAGGTGTTCAAAGAAATGCCTGAGAGAAAATGTCCGCCCGATGT
456 GGATGGGTCGATCGTGCAGTTGAGGTGTTCAAAGAAATGCCTGAGAGAAAATGTCCGCCCGATGT
30186 CTATACTTACTGTACATTGATGGATGGATTGTGCAAGGAGGACAGGATTGATGAGGCTGTTTCCT
521 CTATACTTACTGTACATTGATGGATGGATTGTGCAAGGAGGACAGGATTGATGAGGCTGTTTCCT
*
30251 TGTTGGACGAAATGCAAACTGATGGTTGCTTCCCTTCCCCTGTTACTTTCAATGTGTTGATTAAC
586 TGTTGGACGAAATGCAAACTGATGGTTGCTTCCCTTCCCCTGTTACTTTCAATGTATTGATTAAC
*
30316 GGGTTATGTAAAAAGGGTGACTTGGCTCGCGCAGCAAAGTTAGTGGACAATATGTTTCTCGAAGG
651 GGGTTATGCAAAAAGGGTGACTTGGCTCGCGCAGCAAAGTTAGTGGACAATATGTTTCTCGAAGG
* *
30381 TTGTTTTCATAACCAAGTTACTTATAATACACTCATCCATGGTTTGTGTAT
716 TTGTTGTCATAACCAAGTTACTTGTAATACACTCATCCATGGTTTGTGTAT
** * * *
30432 AACGTCCCAAGGACAACAACCCTCCCAGCCGTTGCCGCTGTCCAATCAACTTTTCAACTCGGCTC
1 AACGTCCTGAGGACAACGACCCTCCCAGCCGTCGCCGCTGTCCGATCAACTTTTCAACTCGGCTC
30497 CCCAATCCAGTTCTTTCAGATTAGGAGATTCCACTTTCTATTCCCTCGTCAACCATTATGCCCAT
66 CCCAATCCAGTTCTTTCAGATTAGGAGATTCCACTTTCTATTCCCTCGTCAACCATTATGCCCAT
*
30562 ACTGCTGATTTCGTTTCTTTAGATGACATTTTATGTCGGATTCCAAAACCGAGTATTTATTGAGA
131 ACTGCTGATTTCGTTTCTTTAGACGACATTTTATGTCGGATTCCAAAACCGAGTATTTATTGAGA
30627 AGTGTTTTCTAGCCATCTGTAAGGCTTATGGGAGAGGCCATTTGCCCGACAAAGCTGTGGATTTA
196 AGTGTTTTCTAGCCATCTGTAAGGCTTATGGGAGAGGCCATTTGCCCGACAAAGCTGTGGATTTA
*
30692 TTCCATAAGGATCCTCATGATTTTCGTTGCATCCCCATTGTTAAGTCCTTTAATTCTGTTCTCAA
261 TTCCATAAGGATCCTCATGATTTTCGTTGCATCCCCATTGTTAAGTCCTTTAATTATGTTCTCAA
*
30757 TGTCATTATAAAAGAAGGTTTCTATCATCGAGCCTTGGACTTCTATAATAGTTTTGTTAATACCA
326 TGTCATTATAAAAGAGGGTTTCTATCATCGAGCCTTGGACTTCTATAATAGTTTTGTTAATACCA
* *
30822 AGAACATCAATATTTCTCCAAATATGTTCTCTTTTAATATGCTTTTCAAGGCCATGTGTAAGTTG
391 AGAACATCAATATTTCTCCAAATATGTTCTCTTTTAATCTGCTTCTCAAGGCCATGTGTAAGTTG
*
30887 GGATGGTTCGATCGTGCAGTTGAGGTGTTCAAAGAAATGCCTGAGAGAAAATGTCCGCCCGATGT
456 GGATGGGTCGATCGTGCAGTTGAGGTGTTCAAAGAAATGCCTGAGAGAAAATGTCCGCCCGATGT
30952 CTATACTTACTGTACATTGATGGATGGATTGTGCAAGGAGGACAGGATTGATGAGGCTGTTTCCT
521 CTATACTTACTGTACATTGATGGATGGATTGTGCAAGGAGGACAGGATTGATGAGGCTGTTTCCT
* * *
31017 TGTTGGACGAAATGCAAACAGATGGTTGCGTCCCTTCCCCTGTTATTTTCAATGTATTGATTAAC
586 TGTTGGACGAAATGCAAACTGATGGTTGCTTCCCTTCCCCTGTTACTTTCAATGTATTGATTAAC
*
31082 GGGTTATGCAAAAAGGGTGACTTAGCTCGCGCAGCAAAGTTAGTGGACAATATGTTTCTCGAAGG
651 GGGTTATGCAAAAAGGGTGACTTGGCTCGCGCAGCAAAGTTAGTGGACAATATGTTTCTCGAAGG
31147 TTGTTGTCATAACCAAGTTACTTGTAATACACTCATCCATGGTTTGTGTAT
716 TTGTTGTCATAACCAAGTTACTTGTAATACACTCATCCATGGTTTGTGTAT
* *
31198 AACGTCCTGAGGACAACGACCCTCCCAGCCGTCGCCGCTGTCCGATCAACTTTTTAACTAGGCTC
1 AACGTCCTGAGGACAACGACCCTCCCAGCCGTCGCCGCTGTCCGATCAACTTTTCAACTCGGCTC
31263 CCCAATCCAGTTCTTTCAGATTAGGAGATTCCACTTTCTATTCCCTCGTCAACCATTATGCCCAT
66 CCCAATCCAGTTCTTTCAGATTAGGAGATTCCACTTTCTATTCCCTCGTCAACCATTATGCCCAT
*
31328 ACTGTTGATTTCGTTTCTTTAGACGACATTTTATGTCGGATTCCAAAACCGAGTATTTATTGAGA
131 ACTGCTGATTTCGTTTCTTTAGACGACATTTTATGTCGGATTCCAAAACCGAGTATTTATTGAGA
31393 AGTGTTTTCTAGCCATCTGTAAGGCTTATGGGAGAGGCCATTTGCCCGACAAAGCTGTGGATTTA
196 AGTGTTTTCTAGCCATCTGTAAGGCTTATGGGAGAGGCCATTTGCCCGACAAAGCTGTGGATTTA
* *
31458 TTCCATAAGGATCCTCATGATTTTCGTTGCATCCCCATTGTTAAGTCATTTAATTTTGTTCTCAA
261 TTCCATAAGGATCCTCATGATTTTCGTTGCATCCCCATTGTTAAGTCCTTTAATTATGTTCTCAA
*
31523 TGTCATTATAAAAGAGGGTTTCTATCATCGAGCCTTGGACTTCTATAATAGTTTTGTTAATAACA
326 TGTCATTATAAAAGAGGGTTTCTATCATCGAGCCTTGGACTTCTATAATAGTTTTGTTAATACCA
31588 AGAACATCAATATTTCTCCAAATATGTTCTCTTTTAATCTGCTTCTCAAGGCCATGTGTAAGTTG
391 AGAACATCAATATTTCTCCAAATATGTTCTCTTTTAATCTGCTTCTCAAGGCCATGTGTAAGTTG
31653 GGATGGGTCGATCGTGCAGTTGAGGTGTTCAAAGAAATGCCTGAGAGAAAATGTCCGCCCGATGT
456 GGATGGGTCGATCGTGCAGTTGAGGTGTTCAAAGAAATGCCTGAGAGAAAATGTCCGCCCGATGT
*
31718 CTATACTTACTGTACATTGATGGATGGATTGTGCAAGGAGGACATGATTGATGAGGCTGTTTCCT
521 CTATACTTACTGTACATTGATGGATGGATTGTGCAAGGAGGACAGGATTGATGAGGCTGTTTCCT
*
31783 TGTTGGACGAAATGCAAACTGATGGTTGCTTCCCTTCCCCTGTTACTTTCAATGTGTTGATTAAC
586 TGTTGGACGAAATGCAAACTGATGGTTGCTTCCCTTCCCCTGTTACTTTCAATGTATTGATTAAC
*
31848 GGGTTATGTAAAAAGGGTGACTTGGCTCGCGCAGCAAAGTTAGTGGACAATATGTTTCTCGAAGG
651 GGGTTATGCAAAAAGGGTGACTTGGCTCGCGCAGCAAAGTTAGTGGACAATATGTTTCTCGAAGG
* *
31913 TTGTTTTCATAACCAAGTTACTTATAATACACTCATCCATGGTTTGTGTAT
716 TTGTTGTCATAACCAAGTTACTTGTAATACACTCATCCATGGTTTGTGTAT
** * * *
31964 AACGTCCCAAGGACAACAACCCTCCCAGCCGTTGCCGCTGTCCAATCAACTTTTCAACTCGGCTC
1 AACGTCCTGAGGACAACGACCCTCCCAGCCGTCGCCGCTGTCCGATCAACTTTTCAACTCGGCTC
32029 CCCAATCCAGTTCTTTCAGATTAGGAGATTCCACTTTCTATTCCCTCGTCAACCATTATGCCCAT
66 CCCAATCCAGTTCTTTCAGATTAGGAGATTCCACTTTCTATTCCCTCGTCAACCATTATGCCCAT
* * *
32094 ACTGCTGATTTCGTTTCTTTAGATGACATTTTATGTCAGATTCCAAAACCGAGTATTTATCGAGA
131 ACTGCTGATTTCGTTTCTTTAGACGACATTTTATGTCGGATTCCAAAACCGAGTATTTATTGAGA
32159 AGTGTTTTCTAGCCATCTGTAAGGCTTATGGGAGAGGCCATTTGCCCGACAAAGCTGTGGATTTA
196 AGTGTTTTCTAGCCATCTGTAAGGCTTATGGGAGAGGCCATTTGCCCGACAAAGCTGTGGATTTA
*
32224 TTCCATAAGGATCCTCATGATTTTCGTTGCATCCCCATTGTTAAGTCCTTTAATTCTGTTCTCAA
261 TTCCATAAGGATCCTCATGATTTTCGTTGCATCCCCATTGTTAAGTCCTTTAATTATGTTCTCAA
*
32289 TGTCATTATAAAAGAAGGTTTCTATCATCGAGCCTTGGACTTCTATAATAGTTTTGTTAATACCA
326 TGTCATTATAAAAGAGGGTTTCTATCATCGAGCCTTGGACTTCTATAATAGTTTTGTTAATACCA
* *
32354 AGAACATCAATATTTCTCCAAATATGTTCTCTTTTAATATGCTTTTCAAGGCCATGTGTAAGTTG
391 AGAACATCAATATTTCTCCAAATATGTTCTCTTTTAATCTGCTTCTCAAGGCCATGTGTAAGTTG
32419 GGATGGGTCGATCGTGCAGTTGAGGTGTTCAAAGAAATGCCTGAGAGAAAATGTCCGCCCGATGT
456 GGATGGGTCGATCGTGCAGTTGAGGTGTTCAAAGAAATGCCTGAGAGAAAATGTCCGCCCGATGT
*
32484 CTATACTTACTGTACATTGATGGATGGATTGTGCAAGGATGACAGGATTGATGAGGCTGTTTCCT
521 CTATACTTACTGTACATTGATGGATGGATTGTGCAAGGAGGACAGGATTGATGAGGCTGTTTCCT
* *
32549 TGTTGGACGAAATGCAAACTGATGGTTGCGTCCCTTCCCCTGTTATTTTCAATGTATTGATTAAC
586 TGTTGGACGAAATGCAAACTGATGGTTGCTTCCCTTCCCCTGTTACTTTCAATGTATTGATTAAC
* *
32614 GGGTTATGCAAAAAGGGTGACTTGGCTTGCGCAACAAAGTTAGTGGACAATATGTTTCTCGAAGG
651 GGGTTATGCAAAAAGGGTGACTTGGCTCGCGCAGCAAAGTTAGTGGACAATATGTTTCTCGAAGG
32679 TTGTTGTCATAACCAAGTTACTTGTAATACACTCATCCATGGTTTGTGTAT
716 TTGTTGTCATAACCAAGTTACTTGTAATACACTCATCCATGGTTTGTGTAT
*
32730 AACGTCCTGAGGACAACGACCCTCCCAGCCGTCGCCGCTGTCCGATCAACTTTTTAACTCGGCTC
1 AACGTCCTGAGGACAACGACCCTCCCAGCCGTCGCCGCTGTCCGATCAACTTTTCAACTCGGCTC
32795 CCCAATCCAGTTCTTTCAGATTAGGAGATTCCACTTTCTATTCCCTCGTCAACCATTATGCCCAT
66 CCCAATCCAGTTCTTTCAGATTAGGAGATTCCACTTTCTATTCCCTCGTCAACCATTATGCCCAT
32860 ACTGCTGATTTCGTTTCTTTAGACGACATTTTATGTCGGATTCCAAAACCGAGTATTTATTGAGA
131 ACTGCTGATTTCGTTTCTTTAGACGACATTTTATGTCGGATTCCAAAACCGAGTATTTATTGAGA
32925 AGTGTTTTCTAGCCATCTGTAAGGCTTATGGGAGAGGCCATTTGCCCGACAAAGCTGTGGATTTA
196 AGTGTTTTCTAGCCATCTGTAAGGCTTATGGGAGAGGCCATTTGCCCGACAAAGCTGTGGATTTA
* *
32990 TTCCATAAGGATCCTCATGATTTTCGTTGCATCCCCATTGTTAAGTCATTTAATTTTGTTCTCAA
261 TTCCATAAGGATCCTCATGATTTTCGTTGCATCCCCATTGTTAAGTCCTTTAATTATGTTCTCAA
33055 TGTCATTATAAAAGAGGGTTTCTATCATCGAGCCTTGGACTTCTATAATAGTTTTGTTAATACCA
326 TGTCATTATAAAAGAGGGTTTCTATCATCGAGCCTTGGACTTCTATAATAGTTTTGTTAATACCA
33120 AGAACATCAATATTTCTCCAAATATGTTCTCTTTTAATCTGCTTCTCAAGGCCATGTGTAAGTTG
391 AGAACATCAATATTTCTCCAAATATGTTCTCTTTTAATCTGCTTCTCAAGGCCATGTGTAAGTTG
33185 GGATGGGTCGATCGTGCAGTTGAGGTGTTCAAAGAAATGCCTGAGAGAAAATGTCCGCCCGATGT
456 GGATGGGTCGATCGTGCAGTTGAGGTGTTCAAAGAAATGCCTGAGAGAAAATGTCCGCCCGATGT
*
33250 TTATACTTACTGTACATTGATGGATGGATTGTGCAAGGAGGACAGGATTGATGAGGCTGTTTCCT
521 CTATACTTACTGTACATTGATGGATGGATTGTGCAAGGAGGACAGGATTGATGAGGCTGTTTCCT
* *
33315 TGTTGGACGAAATACAAACTGATGGTTGCTTCCCTTCCCCTGTTACTTTCAATGTGTTGATTAAC
586 TGTTGGACGAAATGCAAACTGATGGTTGCTTCCCTTCCCCTGTTACTTTCAATGTATTGATTAAC
* *
33380 GGGTTATGTAAAAAGGGTGACTTGGCTCGCGCAGTAAAGTTAGTGGACAATATGTTTCTCGAAGG
651 GGGTTATGCAAAAAGGGTGACTTGGCTCGCGCAGCAAAGTTAGTGGACAATATGTTTCTCGAAGG
* * *
33445 TTGTTTTCATAACCAAGTTATTTATAATACACTCATCCATGGTTTGTGTAT
716 TTGTTGTCATAACCAAGTTACTTGTAATACACTCATCCATGGTTTGTGTAT
* * * *
33496 AACGTCCCGAGGACAACAACCCTCCCAGCCGTTGCCGCTGTCCAATCAACTTTTCAACTCGGCTC
1 AACGTCCTGAGGACAACGACCCTCCCAGCCGTCGCCGCTGTCCGATCAACTTTTCAACTCGGCTC
33561 CCCAATCCAGTTCTTTCAGATTAGGAGATTCCACTTTCTATTCCCTCGTCAACCATTATGCCCAT
66 CCCAATCCAGTTCTTTCAGATTAGGAGATTCCACTTTCTATTCCCTCGTCAACCATTATGCCCAT
* * *
33626 ACTGCTGATTTCGTTTCTTTAGACGACATTTTATGTCGAATTCCAAAATCGAGTATTTATCGAGA
131 ACTGCTGATTTCGTTTCTTTAGACGACATTTTATGTCGGATTCCAAAACCGAGTATTTATTGAGA
*
33691 AGTGTTTTCTAGCCATCTGTAAGGCTTATGGGAGAGGCCATTTGCCCGACAAAGCTGTGGATTTG
196 AGTGTTTTCTAGCCATCTGTAAGGCTTATGGGAGAGGCCATTTGCCCGACAAAGCTGTGGATTTA
*
33756 TTCCATAAAGATCCTCATGATTTTCGTTGCAT-CCCATTGTTAAGTCCTTTAATTATGTTCTCAA
261 TTCCATAAGGATCCTCATGATTTTCGTTGCATCCCCATTGTTAAGTCCTTTAATTATGTTCTCAA
* *
33820 TGTCATTATAAAAAAGGGTTTCTATCATCGAGCCTTGGACTTCTATAATAGTTTTGTTAATGCCA
326 TGTCATTATAAAAGAGGGTTTCTATCATCGAGCCTTGGACTTCTATAATAGTTTTGTTAATACCA
*
33885 AGAACATCAATATTTCTCCAAATATATTCTCTTTTAATCTGCTTCTCAAGGCCATGTGTAAGTTG
391 AGAACATCAATATTTCTCCAAATATGTTCTCTTTTAATCTGCTTCTCAAGGCCATGTGTAAGTTG
33950 GGATGGGTCGATCGTGCAGTTGAGGTGTTCAAAGAAATGCCTGAGAGAAAATGTCCGCCCGATGT
456 GGATGGGTCGATCGTGCAGTTGAGGTGTTCAAAGAAATGCCTGAGAGAAAATGTCCGCCCGATGT
34015 CTATACTTACTGTACATTGATGGATGGATTGTGCAAGGAGGACAGGATTGATGAGGCTGTTTCCT
521 CTATACTTACTGTACATTGATGGATGGATTGTGCAAGGAGGACAGGATTGATGAGGCTGTTTCCT
* *
34080 TGTTGGACGAAATACAAACTGATGGTTGCTTCCCTTCCCCTGTTACTTTCAATGTGTTGATTAAC
586 TGTTGGACGAAATGCAAACTGATGGTTGCTTCCCTTCCCCTGTTACTTTCAATGTATTGATTAAC
* *
34145 GGGTTATGTAAAAAGGGTGACTTGGCTCGCGCAGTAAAGTTAGTGGACAATATGTTTCTCGAAGG
651 GGGTTATGCAAAAAGGGTGACTTGGCTCGCGCAGCAAAGTTAGTGGACAATATGTTTCTCGAAGG
* * *
34210 TTGTTTTCATAACCAAGTTATTTATAATACACTCATCCATGGTTTGTGTAT
716 TTGTTGTCATAACCAAGTTACTTGTAATACACTCATCCATGGTTTGTGTAT
* * * *
34261 AACGTCCCGAGGACAACAACCCTCCCAGCCGTTGCCGCTGTCCAATCAACTTTTCAACTCGGCTC
1 AACGTCCTGAGGACAACGACCCTCCCAGCCGTCGCCGCTGTCCGATCAACTTTTCAACTCGGCTC
34326 CCCAATCCAGTTCTTTCAGATTAGGAGATTCCACTTTCTATTCCCTCGTCAACCATTATGCCCAT
66 CCCAATCCAGTTCTTTCAGATTAGGAGATTCCACTTTCTATTCCCTCGTCAACCATTATGCCCAT
* ** *
34391 ACTGCTGATTTCGTTTCTTTAGACGACATTTTATGTCGAATTCCAAAATTGAGTATTTATCGAGA
131 ACTGCTGATTTCGTTTCTTTAGACGACATTTTATGTCGGATTCCAAAACCGAGTATTTATTGAGA
*
34456 AGTGTTTTCTAGCCATCTGTAAGGCTTATGGGAGAGGCCATTTGCCCGACAAAGCTGTGGATTTG
196 AGTGTTTTCTAGCCATCTGTAAGGCTTATGGGAGAGGCCATTTGCCCGACAAAGCTGTGGATTTA
*
34521 TTCCATAAAGATCCTCATGATTTTCGTTGCAT-CCCATTGTTAAGTCCTTTAATTATGTTCTCAA
261 TTCCATAAGGATCCTCATGATTTTCGTTGCATCCCCATTGTTAAGTCCTTTAATTATGTTCTCAA
* * *
34585 TGTCATTATAAAAAAAGGTTTCTATCATCGAGCCTTGGACTTCTATAATAGTTTTGTTAATGCCA
326 TGTCATTATAAAAGAGGGTTTCTATCATCGAGCCTTGGACTTCTATAATAGTTTTGTTAATACCA
*
34650 AGAACATCAATATTTCTCCAAATATATTCTCTTTTAATCTGCTTCTCAAGGCCATGTGTAAGTTG
391 AGAACATCAATATTTCTCCAAATATGTTCTCTTTTAATCTGCTTCTCAAGGCCATGTGTAAGTTG
* *
34715 GGATGGGTCGATCGTGCAGTTGAGGTGTTCAGAGAAATGCCTGAGAAAAAATGTCCGCCCGATGT
456 GGATGGGTCGATCGTGCAGTTGAGGTGTTCAAAGAAATGCCTGAGAGAAAATGTCCGCCCGATGT
* *
34780 CTATACTTACTATACATTGATGGATGGATTGTGCAAGGAGGACATGATTGATGAGGCTGTTTCCT
521 CTATACTTACTGTACATTGATGGATGGATTGTGCAAGGAGGACAGGATTGATGAGGCTGTTTCCT
34845 TGTTGGACGAAATGCAAACTGATGGTTGCTTCCCTTCCCCTGTTACTTTCAATGTATTGATTAAC
586 TGTTGGACGAAATGCAAACTGATGGTTGCTTCCCTTCCCCTGTTACTTTCAATGTATTGATTAAC
* *
34910 GGGTTATGCAAAAAGGGTGACTTGGCTCGCGCAGCAAATTTAGGGGACAATATGTTTCTCGAAGG
651 GGGTTATGCAAAAAGGGTGACTTGGCTCGCGCAGCAAAGTTAGTGGACAATATGTTTCTCGAAGG
34975 TTGTTGTCATAACCAAGTTACTTGTAATACACTCATCCATGGTTTGTGTAT
716 TTGTTGTCATAACCAAGTTACTTGTAATACACTCATCCATGGTTTGTGTAT
*
35026 AACGTCCTGAGGACAACGACCCTCCCAGCCGTCGCCGCTGTCCGATCAACTTTTTAACTCGGCTC
1 AACGTCCTGAGGACAACGACCCTCCCAGCCGTCGCCGCTGTCCGATCAACTTTTCAACTCGGCTC
35091 CCCAATCCAGTTCTTTCAGATTAGGAGATTCCACTTTCTATTCCCTCGTCAACCATTATGCCCAT
66 CCCAATCCAGTTCTTTCAGATTAGGAGATTCCACTTTCTATTCCCTCGTCAACCATTATGCCCAT
35156 ACTGCTGATTTCGTTTCTTTAGACGACATTTTATGTCGGATTCCAAAACCGAGTATTTATTGAGA
131 ACTGCTGATTTCGTTTCTTTAGACGACATTTTATGTCGGATTCCAAAACCGAGTATTTATTGAGA
35221 AGTGTTTTCTAGCCATCTGTAAGGCTTATGGGAGAGGCCATTTGCCCGACAAAGCTGTGGATTTA
196 AGTGTTTTCTAGCCATCTGTAAGGCTTATGGGAGAGGCCATTTGCCCGACAAAGCTGTGGATTTA
* *
35286 TTCCATAAGGATCCTCATGATTTTCGTTGCATCCCCATTGTTAAGTCATTTAATTTTGTTCTCAA
261 TTCCATAAGGATCCTCATGATTTTCGTTGCATCCCCATTGTTAAGTCCTTTAATTATGTTCTCAA
*
35351 TGTCATTATAAAAGAGGGTTTCTATCATCGAGCCTTGGACTTCTATAATATTTTTGTTAATACCA
326 TGTCATTATAAAAGAGGGTTTCTATCATCGAGCCTTGGACTTCTATAATAGTTTTGTTAATACCA
35416 AGAACATCAATATTTCTCCAAATATGTTCTCTTTTAATCTGCTTCTCAAGGCCATGTGTAAGTTG
391 AGAACATCAATATTTCTCCAAATATGTTCTCTTTTAATCTGCTTCTCAAGGCCATGTGTAAGTTG
* *
35481 GGATGGGTCGATCGTGCAGTTGAGGTGTTCAGAGAAATGCCTGAGAAAAAATGTCCGCCCGATGT
456 GGATGGGTCGATCGTGCAGTTGAGGTGTTCAAAGAAATGCCTGAGAGAAAATGTCCGCCCGATGT
* *
35546 CTATACTTACTATACATTGATGGATGGATTGTGCAAGGAGGACATGATTGATGAGGCTGTTTCCT
521 CTATACTTACTGTACATTGATGGATGGATTGTGCAAGGAGGACAGGATTGATGAGGCTGTTTCCT
35611 TGTTGGACGAAATGCAAACTGATGGTTGCTTCCCTTCCCCTGTTACTTTCAATGTATTGATTAAC
586 TGTTGGACGAAATGCAAACTGATGGTTGCTTCCCTTCCCCTGTTACTTTCAATGTATTGATTAAC
* *
35676 GGGTTATGCAAAAAGGGTGACTTGGCTCGCGCAGCAAATTTAGGGGACAATATGTTTCTCGAAGG
651 GGGTTATGCAAAAAGGGTGACTTGGCTCGCGCAGCAAAGTTAGTGGACAATATGTTTCTCGAAGG
35741 TTGTTGTCATAACCAAGTTACTTGTAATACACTCATCCATGGTTTGTGTAT
716 TTGTTGTCATAACCAAGTTACTTGTAATACACTCATCCATGGTTTGTGTAT
* *
35792 AACGTCCTGAGGACAACGACCCTCCCAGGCGTCGCCGCTGTCCGATCAACTTTTTAACTCGGCTC
1 AACGTCCTGAGGACAACGACCCTCCCAGCCGTCGCCGCTGTCCGATCAACTTTTCAACTCGGCTC
35857 CCCAATCCAGTTCTTTCAGATTAGGAGATTCCACTTTCTATTCCCTCGTCAACCATTATGCCCAT
66 CCCAATCCAGTTCTTTCAGATTAGGAGATTCCACTTTCTATTCCCTCGTCAACCATTATGCCCAT
* ** *
35922 ACTGCTGATTTCGTTTCTTTAGACGACATTTTATGTCGAATTCCAAAATTGAGTATTTATCGAGA
131 ACTGCTGATTTCGTTTCTTTAGACGACATTTTATGTCGGATTCCAAAACCGAGTATTTATTGAGA
*
35987 AGTGTTTTCTAGCCATCTGTAAGGCTTATGGGAGAGGCCATTTGCCCGACAAAGCTGTGGATTTG
196 AGTGTTTTCTAGCCATCTGTAAGGCTTATGGGAGAGGCCATTTGCCCGACAAAGCTGTGGATTTA
*
36052 TTCCATAAAGATCCTCATGATTTTCGTTGCAT-CCCATTGTTAAGTCCTTTAATTATGTTCTCAA
261 TTCCATAAGGATCCTCATGATTTTCGTTGCATCCCCATTGTTAAGTCCTTTAATTATGTTCTCAA
* * *
36116 TGTCATTATAAAAAAAGGTTTCTATCATCGAGCCTTGGACTTCTATAATAGTTTTGTTAATGCCA
326 TGTCATTATAAAAGAGGGTTTCTATCATCGAGCCTTGGACTTCTATAATAGTTTTGTTAATACCA
*
36181 AGAACATCAATATTTCTCCAAATATATTCTCTTTTAATCTGCTTCTCAAGGCCATGTGTAAGTTG
391 AGAACATCAATATTTCTCCAAATATGTTCTCTTTTAATCTGCTTCTCAAGGCCATGTGTAAGTTG
* *
36246 GGATGGGTCGATCGTGCAGTTGAGGTGTTCAGAGAAATGCCTGAGAAAAAATGTCCGCCCGATGT
456 GGATGGGTCGATCGTGCAGTTGAGGTGTTCAAAGAAATGCCTGAGAGAAAATGTCCGCCCGATGT
* *
36311 CTATACTTACTATACATTGATGGATGGATTGTGCAAGGAGGACATGATTGATGAGGCTGTTTCCT
521 CTATACTTACTGTACATTGATGGATGGATTGTGCAAGGAGGACAGGATTGATGAGGCTGTTTCCT
36376 TGTTGGACGAAATGCAAACTGATGGTTGCTTCCCTTCCCCTGTTACTTTCAATGTATTGATTAAC
586 TGTTGGACGAAATGCAAACTGATGGTTGCTTCCCTTCCCCTGTTACTTTCAATGTATTGATTAAC
*
36441 GGGTTATGCAAAAAGGGTGACTTGGCTCGCGCAGCAAAGTTAGGGGACAATATGTTTCTCGAAGG
651 GGGTTATGCAAAAAGGGTGACTTGGCTCGCGCAGCAAAGTTAGTGGACAATATGTTTCTCGAAGG
36506 TTGTTGTCATAACCAAGTTACTTGTAATACACTCATCCATGGTTTGTGTAT
716 TTGTTGTCATAACCAAGTTACTTGTAATACACTCATCCATGGTTTGTGTAT
* *
36557 AACGTCCTGAGGACAACGACCCTCCCAGGCGTCGCCGCTGTCCGATCAACTTTTTAACTCGGCTC
1 AACGTCCTGAGGACAACGACCCTCCCAGCCGTCGCCGCTGTCCGATCAACTTTTCAACTCGGCTC
36622 CCCAATCCAGTTCTTTCAGATTAGGAGATTCCACTTTCTATTCCCTCGTCAACCATTATGCCCAT
66 CCCAATCCAGTTCTTTCAGATTAGGAGATTCCACTTTCTATTCCCTCGTCAACCATTATGCCCAT
36687 ACTGCTGATTTCGTTTCTTTAGACGACATTTTATGTCGGATTCCAAAACCGAGTATTTATTGAGA
131 ACTGCTGATTTCGTTTCTTTAGACGACATTTTATGTCGGATTCCAAAACCGAGTATTTATTGAGA
36752 AGTGTTTTCTAGCCATCTGTAAGGCTTATGGGAGAGGCCATTTGCCCGACAAAGCTGTGGATTTA
196 AGTGTTTTCTAGCCATCTGTAAGGCTTATGGGAGAGGCCATTTGCCCGACAAAGCTGTGGATTTA
* *
36817 TTCCATAAGGATCCTCATGATTTTCGTTGCATCCCCATTGTTAAGTCATTTAATTTTGTTCTCAA
261 TTCCATAAGGATCCTCATGATTTTCGTTGCATCCCCATTGTTAAGTCCTTTAATTATGTTCTCAA
36882 TGTCATTATAAAAGAGGGTTTCTATCATCGAGCCTTGGACTTCTATAATAGTTTTGTTAATACCA
326 TGTCATTATAAAAGAGGGTTTCTATCATCGAGCCTTGGACTTCTATAATAGTTTTGTTAATACCA
36947 AGAACATCAATATTTCTCCAAATATGTTCTCTTTTAATCTGCTTCTCAAGGCCATGTGTAAGTTG
391 AGAACATCAATATTTCTCCAAATATGTTCTCTTTTAATCTGCTTCTCAAGGCCATGTGTAAGTTG
37012 GGATGGGTCGATCGTGCAGTTGAGGTGTTCAAAGAAATGCCTGAGAGAAAATGTCCGCCCGATGT
456 GGATGGGTCGATCGTGCAGTTGAGGTGTTCAAAGAAATGCCTGAGAGAAAATGTCCGCCCGATGT
37077 CTATACTTACTGTACATTGATGGATGGATTGTGCAAGGAGGACAGGATTGATGAGGCTGTTTCCT
521 CTATACTTACTGTACATTGATGGATGGATTGTGCAAGGAGGACAGGATTGATGAGGCTGTTTCCT
* *
37142 TGTTGGACGAAATACAAACTGATGGTTGCTTCCCTTCCCCTGTTACTTTCAATGTGTTGATTAAC
586 TGTTGGACGAAATGCAAACTGATGGTTGCTTCCCTTCCCCTGTTACTTTCAATGTATTGATTAAC
* *
37207 GGGTTATGTAAAAAGGGTGACTTGGCTCGCGCAGTAAAGTTAGTGGACAATATGTTTCTCGAAGG
651 GGGTTATGCAAAAAGGGTGACTTGGCTCGCGCAGCAAAGTTAGTGGACAATATGTTTCTCGAAGG
* *
37272 TTGTTGTCATAACCAAGTTATTTATAATACACTCATCCATGGTTTGTGTAT
716 TTGTTGTCATAACCAAGTTACTTGTAATACACTCATCCATGGTTTGTGTAT
* * * *
37323 AACGTCCCGAGGACAACAACCCTCCCAGCCGTTGCCGCTGTCCAATCAACTTTTCAACTCGGCTC
1 AACGTCCTGAGGACAACGACCCTCCCAGCCGTCGCCGCTGTCCGATCAACTTTTCAACTCGGCTC
*
37388 CCCAATCCAGTTCTTTCAGATTAGGAGATTCCACTTTCTATTCCATCGTCAACCATTATGCCCAT
66 CCCAATCCAGTTCTTTCAGATTAGGAGATTCCACTTTCTATTCCCTCGTCAACCATTATGCCCAT
* * *
37453 ACTGCTGATTTCGTTTCTTTAGACGACATTTTATGTCGAATTCCAAAATCGAGTATTTATCGAGA
131 ACTGCTGATTTCGTTTCTTTAGACGACATTTTATGTCGGATTCCAAAACCGAGTATTTATTGAGA
*
37518 AGTGTTTTCTAGCCATCTGTAAGGCTTATGGGAGAGGCCATTTGCCCGACAAAGCTGTGGATTTG
196 AGTGTTTTCTAGCCATCTGTAAGGCTTATGGGAGAGGCCATTTGCCCGACAAAGCTGTGGATTTA
*
37583 TTCCATAAAGATCCTCATGATTTTCGTTGCAT-CCCATTGTTAAGTCCTTTAATTATGTTCTCAA
261 TTCCATAAGGATCCTCATGATTTTCGTTGCATCCCCATTGTTAAGTCCTTTAATTATGTTCTCAA
* *
37647 TGTCATTATAAAAAAGGGTTTCTATCATCGAGCCTTGGACTTCTATAATAGTTTTGTTAATGCCA
326 TGTCATTATAAAAGAGGGTTTCTATCATCGAGCCTTGGACTTCTATAATAGTTTTGTTAATACCA
*
37712 AGAACATCAATATTTCTCCAAATATATTCTCTTTTAATCTGCTTCTCAAGGCCATGTGTAAGTTG
391 AGAACATCAATATTTCTCCAAATATGTTCTCTTTTAATCTGCTTCTCAAGGCCATGTGTAAGTTG
* *
37777 GGATGGGTCGATCGTGCAGTTGAGGTGTTCAGAGAAATGCCTGAGAAAAAATGTCCGCCCGATGT
456 GGATGGGTCGATCGTGCAGTTGAGGTGTTCAAAGAAATGCCTGAGAGAAAATGTCCGCCCGATGT
*
37842 CTATACTTACTATACATTGATGGATGGATTGTGCAAGGAGGACAGGATTGATGAGGCTGTTTCCT
521 CTATACTTACTGTACATTGATGGATGGATTGTGCAAGGAGGACAGGATTGATGAGGCTGTTTCCT
37907 TGTTGGACGAAATGCAAACTGATGGTTGCTTCCCTTCCCCTGTTACTTTCAATGTATTGATTAAC
586 TGTTGGACGAAATGCAAACTGATGGTTGCTTCCCTTCCCCTGTTACTTTCAATGTATTGATTAAC
* *
37972 GGGTTATGCAAAAAGGGTGACTTGGCTCGCGCAGCAAAGTTAGGGGACAATATGTTTCTCAAAGG
651 GGGTTATGCAAAAAGGGTGACTTGGCTCGCGCAGCAAAGTTAGTGGACAATATGTTTCTCGAAGG
* *
38037 TTGTTGTCATAACCAAGTTACTTGTAATGCACTCATCCATGTTTTGTGTAT
716 TTGTTGTCATAACCAAGTTACTTGTAATACACTCATCCATGGTTTGTGTAT
38088 AA
1 AA
38090 AGGGGAAGTT
Statistics
Matches: 8172, Mismatches: 250, Indels: 5
0.97 0.03 0.00
Matches are distributed among these distances:
765 2706 0.33
766 5466 0.67
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.34
Consensus pattern (766 bp):
AACGTCCTGAGGACAACGACCCTCCCAGCCGTCGCCGCTGTCCGATCAACTTTTCAACTCGGCTC
CCCAATCCAGTTCTTTCAGATTAGGAGATTCCACTTTCTATTCCCTCGTCAACCATTATGCCCAT
ACTGCTGATTTCGTTTCTTTAGACGACATTTTATGTCGGATTCCAAAACCGAGTATTTATTGAGA
AGTGTTTTCTAGCCATCTGTAAGGCTTATGGGAGAGGCCATTTGCCCGACAAAGCTGTGGATTTA
TTCCATAAGGATCCTCATGATTTTCGTTGCATCCCCATTGTTAAGTCCTTTAATTATGTTCTCAA
TGTCATTATAAAAGAGGGTTTCTATCATCGAGCCTTGGACTTCTATAATAGTTTTGTTAATACCA
AGAACATCAATATTTCTCCAAATATGTTCTCTTTTAATCTGCTTCTCAAGGCCATGTGTAAGTTG
GGATGGGTCGATCGTGCAGTTGAGGTGTTCAAAGAAATGCCTGAGAGAAAATGTCCGCCCGATGT
CTATACTTACTGTACATTGATGGATGGATTGTGCAAGGAGGACAGGATTGATGAGGCTGTTTCCT
TGTTGGACGAAATGCAAACTGATGGTTGCTTCCCTTCCCCTGTTACTTTCAATGTATTGATTAAC
GGGTTATGCAAAAAGGGTGACTTGGCTCGCGCAGCAAAGTTAGTGGACAATATGTTTCTCGAAGG
TTGTTGTCATAACCAAGTTACTTGTAATACACTCATCCATGGTTTGTGTAT
Found at i:39973 original size:31 final size:30
Alignment explanation
Indices: 39936--39994 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 30
39926 AGGACTAAAT
39936 TGAAATTTTAATT-AATTTCGAAGACCAAAAA
1 TGAAATTTTAATTAAATTT-GAA-ACCAAAAA
*
39967 TGAAATTTTGATTAAATTTGAAACCAAA
1 TGAAATTTTAATTAAATTTGAAACCAAA
39995 TTTAGAAAGT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 6 0.23
31 15 0.58
32 5 0.19
ACGTcount: A:0.47, C:0.08, G:0.10, T:0.34
Consensus pattern (30 bp):
TGAAATTTTAATTAAATTTGAAACCAAAAA
Found at i:56864 original size:17 final size:16
Alignment explanation
Indices: 56842--56875 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
56832 TAAAGACAGT
56842 AAATAAAAAGATAAATA
1 AAATAAAAAGA-AAATA
*
56859 AAATAAGAAGAAAATA
1 AAATAAAAAGAAAATA
56875 A
1 A
56876 TCCTCACGTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.76, C:0.00, G:0.09, T:0.15
Consensus pattern (16 bp):
AAATAAAAAGAAAATA
Found at i:60726 original size:19 final size:20
Alignment explanation
Indices: 60704--60747 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
60694 GAGAAAAGGT
60704 AAAAGTTAA-AATGAAAGAG
1 AAAAGTTAATAATGAAAGAG
* *
60723 AAAAATTAATAATGAAAGAT
1 AAAAGTTAATAATGAAAGAG
60743 AAAAG
1 AAAAG
60748 AAAAAGTTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 8 0.38
20 13 0.62
ACGTcount: A:0.66, C:0.00, G:0.16, T:0.18
Consensus pattern (20 bp):
AAAAGTTAATAATGAAAGAG
Found at i:67118 original size:17 final size:16
Alignment explanation
Indices: 67096--67129 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
67086 TAAAGACAGT
67096 AAATAAAAAGATAAATA
1 AAATAAAAAGA-AAATA
*
67113 AAATAAGAAGAAAATA
1 AAATAAAAAGAAAATA
67129 A
1 A
67130 TCCTCACGTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.76, C:0.00, G:0.09, T:0.15
Consensus pattern (16 bp):
AAATAAAAAGAAAATA
Found at i:68910 original size:20 final size:20
Alignment explanation
Indices: 68873--68932 Score: 66
Period size: 20 Copynumber: 2.9 Consensus size: 20
68863 TTTTGGTTCA
* * *
68873 GAGGGAATCGATCCCCCCTT
1 GAGGGAACCGATTCCCCTTT
68893 GAGGGAACCGATTACCCCTTT
1 GAGGGAACCGATT-CCCCTTT
68914 GAAGGGGAACCGATTCCCC
1 G-A-GGGAACCGATTCCCC
68933 CCACAGGGGA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
20 11 0.32
21 7 0.21
22 5 0.15
23 11 0.32
ACGTcount: A:0.23, C:0.32, G:0.27, T:0.18
Consensus pattern (20 bp):
GAGGGAACCGATTCCCCTTT
Found at i:80767 original size:64 final size:65
Alignment explanation
Indices: 80612--80773 Score: 218
Period size: 65 Copynumber: 2.5 Consensus size: 65
80602 GAATAAATTG
* * * * * * *
80612 AACATCGAATGCAGTTTATGCATTGATGCACTCTCCATGCATCGATGCACTCAGGTTCTAATGAA
1 AACATCGAATGCACTTTATGCATCGATGCACACACCATGCATCAATGCACTCAGGCTCTAATAAA
* * * *
80677 AACATCGATTGCATTTTATGCATCGATGCACACACCATGCATCAATGCACTTAGGCT-TATTAAA
1 AACATCGAATGCACTTTATGCATCGATGCACACACCATGCATCAATGCACTCAGGCTCTAATAAA
80741 AACATCGAATGCACTTTATGCATCGATGCACAC
1 AACATCGAATGCACTTTATGCATCGATGCACAC
80774 TTAGTGCACC
Statistics
Matches: 85, Mismatches: 12, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
64 36 0.42
65 49 0.58
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.28
Consensus pattern (65 bp):
AACATCGAATGCACTTTATGCATCGATGCACACACCATGCATCAATGCACTCAGGCTCTAATAAA
Found at i:88372 original size:344 final size:345
Alignment explanation
Indices: 87744--88438 Score: 1338
Period size: 344 Copynumber: 2.0 Consensus size: 345
87734 ATCCTTATCT
87744 CTAAGGTGGATTAGGCCTAGTTACTACCTAGAGCCCTTTGTTTATATAGTTCCTCCCTAGCTTCT
1 CTAAGGTGGATTAGGCCTAGTTACTACCTAGAGCCCTTTGTTTATATAGTTCCTCCCTAGCTTCT
*
87809 CTCGAAGACTAAAGATATTTTTGCCAAGGCATTCTCTCAAACCCTAAGCACCTTCTAAGGAAATG
66 CTCGAAGACTAAAGATATTTTTGCCAAGGCATTCTCTCAAACCCTAAGCACCTTCTAAGGAAAGG
87874 CTACTCTCATAGCTCCCACAACCTCAAAGCATTAAGTTTCATAAACAAAATAGATTAAAGCATAG
131 CTACTCTCATAGCTCCCACAACCTCAAAGCATTAAGTTTCATAAACAAAATAGATTAAAGCATAG
*
87939 CAAAGCAACCATTCATTGAAATAAAAACTTAAACATCCAAGTGAACTCCCACCAAATAGGATTAG
196 CAAAGAAACCATTCATTGAAATAAAAACTTAAACATCCAAGTGAACTCCCACCAAATAGGATTAG
*
88004 TTCATGGTGGGGTTCGAAATAAACAAGCACAAAGCAAGTATCATTCATTCCTTACAACTCAATAA
261 TTCATGGTGGGGTTCGAAATAAACAAGCACAAAGCAAGTATCATTCATTCCTTACAACCCAATAA
88069 CAAAATATGAAAGCAAAGAA
326 CAAAATATGAAAGCAAAGAA
*
88089 CTAAGGTGGATTAGGCCTAGTTACTACCTAGAGCCCTTTGTTTATGTAGTTCCTCCCTAGCTTCT
1 CTAAGGTGGATTAGGCCTAGTTACTACCTAGAGCCCTTTGTTTATATAGTTCCTCCCTAGCTTCT
88154 CTCGAAGACTAAAGATA-TTTTGCCAAGGCATTCTCTCAAACCCTAAGCACCTTCTAAGGAAAGG
66 CTCGAAGACTAAAGATATTTTTGCCAAGGCATTCTCTCAAACCCTAAGCACCTTCTAAGGAAAGG
88218 CTACTCTCATAGCTCCCACAACCTCAAAGCATTAAGTTTCATAAACAAAATAGATTAAAGCATAG
131 CTACTCTCATAGCTCCCACAACCTCAAAGCATTAAGTTTCATAAACAAAATAGATTAAAGCATAG
88283 CAAAGAAACCATTCATTGAAATAAAAACTTAAACATCCAAGTGAACTCCCACCAAATAGGATTAG
196 CAAAGAAACCATTCATTGAAATAAAAACTTAAACATCCAAGTGAACTCCCACCAAATAGGATTAG
88348 TTCATGGTGGGGTTCGAAATAAACAAGCACAAAGCAAGTATCATTCATTCCTTACAACCCAATAA
261 TTCATGGTGGGGTTCGAAATAAACAAGCACAAAGCAAGTATCATTCATTCCTTACAACCCAATAA
*
88413 CAAAATATGAAAGCAAATAA
326 CAAAATATGAAAGCAAAGAA
88433 CTAAGG
1 CTAAGG
88439 GAGGAAAGAA
Statistics
Matches: 345, Mismatches: 5, Indels: 1
0.98 0.01 0.00
Matches are distributed among these distances:
344 264 0.77
345 81 0.23
ACGTcount: A:0.38, C:0.23, G:0.14, T:0.25
Consensus pattern (345 bp):
CTAAGGTGGATTAGGCCTAGTTACTACCTAGAGCCCTTTGTTTATATAGTTCCTCCCTAGCTTCT
CTCGAAGACTAAAGATATTTTTGCCAAGGCATTCTCTCAAACCCTAAGCACCTTCTAAGGAAAGG
CTACTCTCATAGCTCCCACAACCTCAAAGCATTAAGTTTCATAAACAAAATAGATTAAAGCATAG
CAAAGAAACCATTCATTGAAATAAAAACTTAAACATCCAAGTGAACTCCCACCAAATAGGATTAG
TTCATGGTGGGGTTCGAAATAAACAAGCACAAAGCAAGTATCATTCATTCCTTACAACCCAATAA
CAAAATATGAAAGCAAAGAA
Found at i:91922 original size:44 final size:44
Alignment explanation
Indices: 91874--91968 Score: 115
Period size: 44 Copynumber: 2.2 Consensus size: 44
91864 TTGTGCTTAA
* *
91874 TGCATCGATACAT-TTAATAG-TGCATCGATGCA-TCCCTTTGTATG
1 TGCATCGATACATCATAA-AGATGCATCGATGCACT-CC-TTGAATG
*
91918 TGCATCGATACATCATGAAGATGCATCGATGCACTCCTTGAATG
1 TGCATCGATACATCATAAAGATGCATCGATGCACTCCTTGAATG
91962 TGCATCG
1 TGCATCG
91969 GTGCACAAAG
Statistics
Matches: 45, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
44 28 0.62
45 16 0.36
46 1 0.02
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.32
Consensus pattern (44 bp):
TGCATCGATACATCATAAAGATGCATCGATGCACTCCTTGAATG
Found at i:91965 original size:23 final size:22
Alignment explanation
Indices: 91893--91973 Score: 76
Period size: 23 Copynumber: 3.6 Consensus size: 22
91883 ACATTTAATA
*
91893 GTGCATCGATGCATCCCTTTGTAT
1 GTGCATCGATGCAT-CC-TTGAAT
* *
91917 GTGCATCGATACAT-CATGAA-
1 GTGCATCGATGCATCCTTGAAT
91937 GATGCATCGATGCACTCCTTGAAT
1 G-TGCATCGATGCA-TCCTTGAAT
*
91961 GTGCATCGGTGCA
1 GTGCATCGATGCA
91974 CAAAGCCATG
Statistics
Matches: 47, Mismatches: 6, Indels: 9
0.76 0.10 0.15
Matches are distributed among these distances:
20 1 0.02
21 14 0.30
22 2 0.04
23 16 0.34
24 14 0.30
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.30
Consensus pattern (22 bp):
GTGCATCGATGCATCCTTGAAT
Found at i:93551 original size:15 final size:15
Alignment explanation
Indices: 93531--93560 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
93521 CATAGTAAGG
93531 GGAGTAAGTAATTTT
1 GGAGTAAGTAATTTT
93546 GGAGTAAGTAATTTT
1 GGAGTAAGTAATTTT
93561 CAACTTTTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.00, G:0.27, T:0.40
Consensus pattern (15 bp):
GGAGTAAGTAATTTT
Found at i:94013 original size:65 final size:64
Alignment explanation
Indices: 93944--94094 Score: 212
Period size: 65 Copynumber: 2.3 Consensus size: 64
93934 GAATAAATTG
* * * * * *
93944 AACATCGAATGTAGTTTATGCATCGATGCACTCTCCATGCATCGATGCACTCAGGTTTTAATGAA
1 AACATCGAATGCATTTTATGCATCGATGCACACACCATGCATCGATGCACTCAGG-CTTAATAAA
* * *
94009 AACATCGATTGCATTTTATGCATCGATGCACACACCATGCATCGATGCACTTAGGCTTATTAAA
1 AACATCGAATGCATTTTATGCATCGATGCACACACCATGCATCGATGCACTCAGGCTTAATAAA
94073 AACATCGAATGCATTTTATGCA
1 AACATCGAATGCATTTTATGCA
94095 CTAAGTGTTC
Statistics
Matches: 76, Mismatches: 10, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
64 27 0.36
65 49 0.64
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.30
Consensus pattern (64 bp):
AACATCGAATGCATTTTATGCATCGATGCACACACCATGCATCGATGCACTCAGGCTTAATAAA
Found at i:95525 original size:14 final size:14
Alignment explanation
Indices: 95506--95533 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
95496 CAAAGGAACA
95506 CTTCATGATATGAG
1 CTTCATGATATGAG
95520 CTTCATGATATGAG
1 CTTCATGATATGAG
95534 TTCGGATAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.14, G:0.21, T:0.36
Consensus pattern (14 bp):
CTTCATGATATGAG
Found at i:98191 original size:18 final size:19
Alignment explanation
Indices: 98154--98191 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
98144 CGTGTCTTTA
*
98154 TTGACCATATCCTTTACAT
1 TTGACCATATCCTGTACAT
*
98173 TTGACCTTAT-CTGTACAT
1 TTGACCATATCCTGTACAT
98191 T
1 T
98192 CCATGTCACG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.24, C:0.24, G:0.08, T:0.45
Consensus pattern (19 bp):
TTGACCATATCCTGTACAT
Found at i:100551 original size:2 final size:2
Alignment explanation
Indices: 100544--100575 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
100534 CCATATTTTA
100544 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
100576 TGGTTTTATC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:101770 original size:16 final size:15
Alignment explanation
Indices: 101749--101778 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
101739 CAACTGAAAT
101749 TATTAAATATTATATA
1 TATTAAATA-TATATA
101765 TATTAAATATATAT
1 TATTAAATATATAT
101779 TTTAAGCTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
TATTAAATATATATA
Found at i:104322 original size:18 final size:18
Alignment explanation
Indices: 104299--104334 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
104289 AACTTTTGGA
104299 TTTATTCAATTAA-TATTT
1 TTTATTC-ATTAACTATTT
104317 TTTATTCATTAACTATTT
1 TTTATTCATTAACTATTT
104335 AGGACTTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.29
18 12 0.71
ACGTcount: A:0.31, C:0.08, G:0.00, T:0.61
Consensus pattern (18 bp):
TTTATTCATTAACTATTT
Found at i:105415 original size:16 final size:16
Alignment explanation
Indices: 105367--105455 Score: 56
Period size: 16 Copynumber: 5.1 Consensus size: 16
105357 TATAAATAGA
105367 AATATCTAAATAATATAAT
1 AATAT-TAAAT-AT-TAAT
*
105386 AATAAT-AATAATTAAT
1 AATATTAAAT-ATTAAT
105402 AATATTAAATATTAATTT
1 AATATTAAATATTAA--T
105420 AAATATTAATATATTCTAA-
1 -AATATTAA-ATA-T-TAAT
*
105439 AATTTTAAATATTAAT
1 AATATTAAATATTAAT
105455 A
1 A
105456 TGTTCTAAAT
Statistics
Matches: 59, Mismatches: 3, Indels: 19
0.73 0.04 0.23
Matches are distributed among these distances:
15 3 0.05
16 16 0.27
17 12 0.20
18 9 0.15
19 12 0.20
20 3 0.05
21 1 0.02
22 3 0.05
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (16 bp):
AATATTAAATATTAAT
Found at i:105423 original size:12 final size:13
Alignment explanation
Indices: 105401--105431 Score: 55
Period size: 12 Copynumber: 2.5 Consensus size: 13
105391 TAATAATTAA
105401 TAATATTAAATAT
1 TAATATTAAATAT
105414 TAAT-TTAAATAT
1 TAATATTAAATAT
105426 TAATAT
1 TAATAT
105432 ATTCTAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
12 12 0.71
13 5 0.29
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
TAATATTAAATAT
Found at i:105478 original size:25 final size:25
Alignment explanation
Indices: 105417--105464 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
105407 TAAATATTAA
105417 TTTAAATATTAATATATTCTAAAAT
1 TTTAAATATTAATATATTCTAAAAT
*
105442 TTTAAATATTAATATGTTCTAAA
1 TTTAAATATTAATATATTCTAAA
105465 TTGTCTTATA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.46, C:0.04, G:0.02, T:0.48
Consensus pattern (25 bp):
TTTAAATATTAATATATTCTAAAAT
Found at i:106170 original size:43 final size:41
Alignment explanation
Indices: 106089--106170 Score: 101
Period size: 43 Copynumber: 2.0 Consensus size: 41
106079 TTTAAAATAA
* * *
106089 TATAGAGTACTTGTAATATTTAGTATTCATTTATAATATTT
1 TATAGAGTACTTATAATATTCAGTATTCATTTAGAATATTT
* *
106130 TATAGAGTACTTATAAATATATCGGTATTTATTTAGAATAT
1 TATAGAGTACTTAT-AATAT-TCAGTATTCATTTAGAATAT
106171 CATCAGCTAC
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
41 13 0.38
42 5 0.15
43 16 0.47
ACGTcount: A:0.37, C:0.05, G:0.11, T:0.48
Consensus pattern (41 bp):
TATAGAGTACTTATAATATTCAGTATTCATTTAGAATATTT
Found at i:106950 original size:32 final size:33
Alignment explanation
Indices: 106902--106969 Score: 95
Period size: 32 Copynumber: 2.1 Consensus size: 33
106892 GGACATACCC
* *
106902 GTGAGAACTAAAATTCTTGTCA-TAGAGGTAGTT
1 GTGAGAAATAAAATTCTTGTCAGAAG-GGTAGTT
106935 GTGAGAAAT-AAATTCTTGTCAGAAGGGTAGTT
1 GTGAGAAATAAAATTCTTGTCAGAAGGGTAGTT
106967 GTG
1 GTG
106970 TGAAGTATAT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
32 22 0.69
33 10 0.31
ACGTcount: A:0.32, C:0.07, G:0.28, T:0.32
Consensus pattern (33 bp):
GTGAGAAATAAAATTCTTGTCAGAAGGGTAGTT
Found at i:109965 original size:23 final size:24
Alignment explanation
Indices: 109939--109983 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
109929 TTGTTATTTT
109939 TATTTAATTA-TTAATTTTTTTAG
1 TATTTAATTATTTAATTTTTTTAG
**
109962 TATTTTTTTATTTAATTTTTTT
1 TATTTAATTATTTAATTTTTTT
109984 TGCAGTTATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 8 0.42
24 11 0.58
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.73
Consensus pattern (24 bp):
TATTTAATTATTTAATTTTTTTAG
Done.