genome.fa.s2580.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002580.1 Hibiscus syriacus cultivar Beakdansim tig00005225_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90128

Tables:   1   

This is table  1  of  1  ( 84 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9277--9327	19	2.7	19	87	0	75	17	21	35	25	1.95
9972--10008	16	2.2	17	90	4	58	35	21	5	37	1.77
10486--10524	20	2.0	20	100	0	78	41	10	23	25	1.86
15859--15909	23	2.2	23	82	3	57	41	5	11	41	1.66
15875--15919	23	2.0	23	86	0	63	33	8	13	44	1.75
19231--19271	2	21.0	2	95	5	75	51	0	0	48	1.00
19989--20156	84	2.0	84	96	0	309	27	21	19	32	1.97
25861--25953	21	4.6	20	78	4	96	38	18	24	18	1.92
25859--25953	41	2.3	41	98	0	181	38	17	24	18	1.92
25861--25953	20	4.6	20	78	4	96	38	18	24	18	1.92
26127--26227	20	4.9	21	72	9	100	16	21	24	36	1.94
26127--26252	41	3.0	41	93	3	182	16	22	23	37	1.94
26346--26379	12	3.1	11	91	8	52	29	52	17	0	1.45
26864--26984	6	21.5	6	95	4	186	0	17	51	31	1.46
26864--26982	46	2.7	46	93	5	201	0	17	51	31	1.46
27094--27170	21	3.7	21	75	3	93	35	27	16	20	1.95
27214--27300	21	4.2	21	73	2	77	36	28	17	17	1.92
27094--27325	122	1.9	122	92	1	394	33	24	21	21	1.97
27445--27497	20	2.7	20	93	0	88	28	28	18	24	1.98
27685--27728	22	2.0	22	90	0	70	20	43	15	20	1.88
27992--28029	20	1.9	20	88	0	58	13	15	21	50	1.78
29349--29393	18	2.5	18	85	0	63	26	42	15	15	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29866--29932	20	3.4	20	81	2	73	38	23	22	14	1.92
29921--29978	14	3.9	14	79	16	71	48	25	17	8	1.75
29905--29995	32	2.8	33	94	3	166	47	23	18	10	1.80
29866--30000	19	7.6	19	71	19	85	42	23	20	12	1.86
30012--30069	14	3.9	14	79	16	71	8	17	25	48	1.75
30007--30085	32	2.4	33	95	2	142	10	18	24	46	1.80
30026--30143	20	6.4	19	77	11	95	13	20	24	41	1.88
31993--32028	14	2.6	14	90	0	54	30	0	22	47	1.52
32135--32211	14	4.7	15	74	22	59	45	19	22	12	1.84
32145--32211	18	3.8	19	81	18	92	46	17	22	13	1.83
32237--32287	20	2.5	20	96	0	93	21	23	21	33	1.97
32635--32670	14	2.6	14	90	0	54	30	0	22	47	1.52
33913--33971	24	2.5	24	82	0	73	28	16	18	35	1.93
34146--34170	12	2.1	12	100	0	50	72	0	28	0	0.86
36466--36563	19	5.7	19	69	22	90	43	19	24	12	1.85
36466--36559	33	2.8	33	98	0	179	43	19	24	12	1.85
36559--36601	20	2.2	20	87	4	61	16	18	23	41	1.89
36587--36620	14	2.4	14	85	0	50	8	23	20	47	1.78
36742--36778	14	2.6	14	91	0	65	45	24	0	29	1.53
38136--38202	21	3.2	21	68	4	55	19	20	35	23	1.95
38136--38258	42	2.9	41	80	7	113	22	17	36	22	1.95
40258--40355	19	5.1	19	92	2	151	46	17	22	13	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40351--40395	19	2.4	19	92	0	72	8	15	26	48	1.74
40949--41042	20	4.7	20	80	2	89	23	18	24	34	1.96
40970--41104	41	3.3	41	81	4	130	20	21	20	37	1.94
41031--41123	20	4.6	20	78	4	96	18	24	18	38	1.92
41031--41126	41	2.3	41	98	0	183	18	23	17	39	1.92
41752--41777	13	2.0	13	100	0	52	23	23	15	38	1.92
42204--42253	22	2.3	22	96	0	91	0	42	18	40	1.50
42215--42262	22	2.2	22	84	0	60	2	41	20	35	1.64
43232--43277	24	1.9	24	95	0	83	67	17	6	8	1.39
43490--43520	14	2.2	14	94	0	53	58	3	12	25	1.50
44062--44337	20	13.6	20	71	6	135	38	22	18	20	1.93
44080--44334	61	4.2	61	73	9	175	38	22	17	21	1.93
44123--44334	20	10.4	21	75	6	152	38	22	17	21	1.94
44123--44334	41	5.2	41	85	1	266	38	22	17	21	1.94
44062--44334	81	3.4	81	79	5	266	38	22	17	20	1.93
44898--44969	20	3.5	20	81	5	83	50	19	16	13	1.79
44958--45022	14	4.3	14	73	17	58	46	21	23	9	1.80
44953--45033	33	2.5	33	93	0	135	46	22	20	9	1.80
45034--45155	33	3.5	33	83	8	145	11	22	18	46	1.81
45029--45155	20	7.1	19	72	20	112	11	23	18	45	1.83
46005--46066	19	3.3	19	95	0	115	17	20	14	46	1.83
46071--46125	20	2.8	20	91	0	83	21	21	23	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48551--48602	24	2.2	24	82	0	59	38	19	19	23	1.93
49440--49619	20	9.0	20	67	17	56	23	18	20	37	1.94
49453--49596	40	3.6	40	87	5	177	23	18	18	38	1.93
49449--49619	40	4.3	40	83	8	147	23	17	20	38	1.93
49700--49749	20	2.5	21	77	9	59	16	18	32	34	1.92
50161--50208	23	2.1	23	88	0	69	37	8	16	37	1.79
50963--51078	57	2.0	57	94	0	205	38	18	7	35	1.79
51234--51584	112	3.1	112	91	0	560	27	14	12	45	1.81
52865--52902	3	12.7	3	88	0	58	65	0	34	0	0.93
58898--58962	22	3.0	22	88	2	96	24	6	49	20	1.71
60307--60341	16	2.2	16	89	0	52	48	0	0	51	1.00
61317--61374	20	2.7	20	81	10	62	37	18	15	27	1.92
64330--64379	26	1.9	26	84	8	66	40	0	24	36	1.55
68437--68506	20	3.5	20	98	0	131	31	5	24	38	1.79
73283--73316	17	1.9	18	94	5	61	82	5	11	0	0.83
73681--73719	20	2.0	20	89	0	60	33	10	23	33	1.88
83466--83520	27	2.0	27	89	0	83	36	25	10	27	1.89
89719--89764	22	2.1	22	87	0	65	26	13	23	36	1.91

Tables:   1

The End!