Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002581.1 Hibiscus syriacus cultivar Beakdansim tig00005227_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  123916

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5926--6020
28
3.6
28
65
28
71
20
22
14
43
1.88
6065--6104
14
2.8
14
88
3
53
67
2
7
22
1.28
6112--6153
11
3.8
11
81
6
50
83
4
2
9
0.88
6112--6153
23
1.9
21
85
9
57
83
4
2
9
0.88
11743--11781
6
6.8
6
97
2
64
53
0
10
35
1.35
11815--11865
23
2.2
23
82
6
59
76
0
3
19
0.94
12328--12357
12
2.5
12
88
0
51
66
3
23
6
1.30
12464--12611
76
2.0
75
90
4
235
58
10
2
29
1.45
32973--33001
14
2.1
14
100
0
58
37
0
6
55
1.27
37616--37674
23
2.6
23
88
0
91
30
28
22
18
1.97
37690--37907
103
2.1
103
95
1
393
37
23
12
26
1.91
43665--43728
2
32.0
2
100
0
128
50
0
0
50
1.00
43843--43983
70
2.0
72
80
6
162
48
4
2
44
1.37
43869--43966
30
3.2
30
66
16
83
46
6
2
44
1.39
43958--43991
17
2.0
17
100
0
68
58
0
0
41
0.98
43954--44017
28
2.2
30
83
13
80
51
0
3
45
1.17
52796--52830
3
11.7
3
100
0
70
0
31
0
68
0.90
55719--55755
15
2.4
16
82
17
51
27
13
27
32
1.94
57767--57799
15
2.1
16
94
5
59
36
30
33
0
1.58
70764--70829
10
7.0
10
71
23
54
75
0
19
4
0.97
70764--70904
18
8.1
18
76
21
115
72
0
21
4
1.08
70774--70904
25
5.1
24
72
24
76
72
0
22
4
1.08
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
70764--70904
35
4.0
34
74
21
123
72
0
21
4
1.08
70804--70904
43
2.4
42
83
8
116
72
0
21
4
1.10
72228--72444
51
4.2
50
84
6
229
28
16
27
28
1.97
72228--72499
55
5.2
49
85
6
202
29
16
26
28
1.97
72337--72499
55
2.9
55
92
2
256
26
19
25
28
1.98
72671--72703
15
2.1
16
94
5
59
36
30
33
0
1.58
84023--84080
26
2.2
26
84
0
71
20
15
17
46
1.84
84298--84375
26
3.0
26
82
0
84
24
14
15
46
1.83
95251--95285
18
1.9
18
88
0
52
17
17
0
65
1.27
98139--98272
40
3.3
40
71
15
141
26
26
20
26
1.99
98121--98292
80
2.2
80
100
0
344
26
25
21
26
1.99
98261--98479
21
10.8
21
75
9
141
31
19
22
26
1.98
98302--98434
20
6.7
20
73
20
111
37
17
21
23
1.94
98274--98469
79
2.4
81
83
9
256
33
19
21
24
1.97
98399--98584
42
4.5
42
72
10
130
26
20
22
29
1.99
98489--98591
21
4.9
21
86
0
116
27
20
23
29
1.99
106288--106321
16
2.1
16
94
0
59
41
20
0
38
1.53
118983--119157
87
2.0
87
98
0
341
26
11
23
38
1.88
119563--119612
26
2.0
26
84
4
66
32
6
8
54
1.54

Tables:   1

The End!