genome.fa.s2582.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002582.1 Hibiscus syriacus cultivar Beakdansim tig00005228_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  124688

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43--126	42	2.0	43	86	6	118	41	1	3	53	1.26
3820--3844	11	2.3	11	100	0	50	8	12	0	80	0.92
8643--8687	20	2.1	21	88	12	65	75	0	2	22	0.91
9350--9495	75	2.0	75	89	4	224	60	7	2	29	1.38
11308--11346	20	2.0	20	85	5	53	84	5	2	7	0.84
12834--13087	129	2.0	130	97	0	483	34	18	16	31	1.93
17144--17178	18	1.9	18	88	11	54	74	0	8	17	1.06
17854--18001	76	2.0	76	89	4	228	58	8	2	29	1.42
24110--24245	35	3.9	35	83	4	170	35	17	25	21	1.95
24105--24245	71	2.0	68	87	4	201	36	17	25	20	1.94
28849--28891	23	1.9	22	86	13	61	62	4	4	27	1.35
29746--29782	19	1.9	19	89	10	58	2	13	2	81	0.92
29742--29766	7	3.6	7	100	0	50	0	16	0	84	0.63
31824--31894	20	3.5	21	85	9	76	33	21	21	23	1.97
31846--31894	21	2.4	21	89	3	73	32	22	22	22	1.98
33203--33246	15	2.9	15	75	0	52	61	0	34	4	1.16
34286--34342	2	28.5	2	100	0	114	50	0	0	49	1.00
36797--36845	18	2.6	18	77	6	53	40	4	2	53	1.32
40058--40118	30	2.0	30	100	0	122	37	6	6	49	1.55
45141--45616	238	2.0	238	94	0	835	34	19	8	37	1.82
54105--54138	3	11.3	3	100	0	68	32	35	0	32	1.58
57199--57684	245	2.0	244	90	1	776	36	16	18	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61013--61081	23	3.0	23	89	0	93	28	23	26	21	1.99
62614--62692	22	3.7	22	93	5	135	20	27	24	27	1.99
66079--66147	23	3.0	23	84	0	93	26	24	27	21	1.99
66163--66375	103	2.1	103	93	0	363	36	22	13	28	1.92
67191--67236	20	2.3	20	100	0	92	21	30	0	47	1.51
67751--67809	22	2.7	22	94	0	100	18	28	25	27	1.98
68607--68647	17	2.5	17	80	11	50	56	0	0	43	0.99
69330--69412	30	2.7	30	73	1	76	30	24	16	28	1.97
72695--72915	102	2.2	103	78	4	250	32	13	19	34	1.91
74311--74348	19	2.0	20	94	5	69	28	15	28	26	1.96
74316--74474	63	2.5	61	87	8	205	32	18	22	27	1.97
74930--75391	149	3.1	149	94	1	829	27	14	21	36	1.93
81506--81543	19	2.0	20	89	5	60	28	13	28	28	1.94
81511--81669	63	2.5	62	85	4	194	32	18	22	27	1.97
82125--82567	149	3.0	149	97	0	832	28	15	20	35	1.93
83503--83534	13	2.5	13	100	0	64	53	12	18	15	1.73
83948--84100	45	3.4	45	91	2	236	30	25	6	37	1.81
84182--84296	61	1.9	61	87	3	169	32	28	16	22	1.96
86888--86967	34	2.5	31	77	13	99	57	13	8	20	1.62
87688--87875	93	2.0	94	86	5	265	38	6	13	40	1.72
88080--88152	33	2.3	34	80	15	86	52	1	2	43	1.24
88130--88235	42	2.7	37	73	16	106	48	1	0	49	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88373--88417	14	3.1	14	78	15	56	42	4	0	53	1.21
88448--88557	38	2.9	37	74	12	102	50	0	0	48	1.13
88756--88851	14	6.8	14	72	9	61	53	2	0	44	1.12
89485--89510	2	13.0	2	100	0	52	50	0	0	50	1.00
91353--91381	5	5.8	5	100	0	58	20	58	0	20	1.39
98027--98062	17	2.1	18	94	5	65	72	5	8	13	1.27
98297--98329	13	2.5	13	95	5	57	21	27	15	36	1.93
99386--99426	21	2.0	21	85	0	55	21	24	21	31	1.98
99967--100020	23	2.3	25	78	18	62	38	14	3	42	1.64
103978--104010	15	2.1	17	88	11	52	33	12	6	48	1.65
104911--104993	42	2.0	42	85	0	112	31	7	21	39	1.81
114649--114673	7	3.6	7	100	0	50	12	0	0	88	0.53
117946--118012	31	2.2	31	89	5	100	31	23	8	35	1.86
117955--118018	31	2.1	30	97	2	119	25	28	12	34	1.92
118653--118686	2	17.0	2	100	0	68	50	0	0	50	1.00
120042--120081	16	2.4	17	87	8	55	52	2	2	42	1.28
120042--120085	17	2.6	18	82	10	56	52	2	2	43	1.26
120202--120272	31	2.3	31	90	2	108	28	26	14	30	1.95

Tables:   1

The End!