Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002584.1 Hibiscus syriacus cultivar Beakdansim tig00005230_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60918

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--795
197
4.1
198
88
7
1182
28
15
14
41
1.86
935--1395
168
2.7
174
80
11
485
28
13
12
45
1.80
1417--1454
19
2.0
20
94
5
69
13
15
23
47
1.81
1633--1664
2
16.0
2
100
0
64
50
0
0
50
1.00
11264--11318
24
2.2
24
81
15
60
50
1
1
45
1.22
11257--11313
29
2.0
28
83
10
71
49
1
1
47
1.22
17079--17105
10
2.7
10
100
0
54
7
0
7
85
0.75
17494--17523
3
10.0
3
100
0
60
66
0
0
33
0.92
18263--18452
29
6.6
29
77
4
161
32
4
16
45
1.68
19381--19668
117
2.5
117
91
1
470
19
15
31
32
1.94
19389--19705
117
2.7
117
87
2
352
23
14
31
30
1.94
38270--38303
16
2.1
16
94
0
59
32
26
8
32
1.87
45143--45175
17
1.9
17
88
11
50
15
42
6
36
1.71
47429--47475
21
2.2
21
96
0
85
29
31
19
19
1.96
47515--47717
19
9.9
19
71
15
129
23
19
22
34
1.96
47515--47666
42
3.7
42
91
3
240
22
19
23
34
1.96
47589--47717
61
2.1
61
92
0
222
24
18
21
35
1.95
47618--47708
21
4.4
20
74
16
62
21
17
23
37
1.94
47778--47893
21
5.6
21
84
9
150
32
26
20
19
1.97
47778--47895
61
1.9
60
86
10
168
33
26
20
19
1.96
47905--47955
21
2.4
21
93
0
84
15
21
31
31
1.95
51684--51716
17
1.9
17
88
11
50
42
0
12
45
1.41
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58172--58231
30
2.0
30
100
0
120
30
20
16
33
1.94

Tables:   1

The End!