genome.fa.s2585.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002585.1 Hibiscus syriacus cultivar Beakdansim tig00005231_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72206

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2697--2754	20	2.7	20	84	10	71	25	22	18	32	1.97
2742--2882	64	2.2	63	82	9	171	26	24	17	31	1.97
15912--16051	23	5.8	24	80	7	158	24	0	29	46	1.53
15920--16046	49	2.6	50	77	8	145	24	0	29	45	1.53
16123--16149	10	2.7	10	100	0	54	62	0	11	25	1.28
16098--16171	37	2.1	36	87	12	109	58	6	8	27	1.52
16135--16234	26	3.9	25	78	12	105	56	10	9	25	1.61
16135--16278	25	5.5	26	76	11	109	57	10	9	22	1.60
16135--16234	52	1.9	51	88	9	150	56	10	9	25	1.61
16213--16283	28	2.7	26	84	6	90	60	14	8	16	1.57
18202--18270	23	3.0	23	76	4	68	23	20	23	33	1.97
19330--19375	22	2.1	22	84	8	58	69	0	8	21	1.15
21318--21351	8	4.2	8	92	0	59	29	0	35	35	1.58
26111--26719	109	5.6	110	81	9	564	27	25	15	31	1.96
26103--27368	51	23.9	55	80	10	761	25	25	17	31	1.97
26168--26698	55	9.8	55	82	7	511	29	25	15	30	1.95
26225--26698	161	2.9	162	83	5	514	29	25	14	30	1.95
26107--26719	55	11.3	56	80	10	489	27	25	15	31	1.96
26696--27356	51	12.8	51	86	3	799	22	25	19	32	1.97
27738--27927	36	5.2	36	87	1	238	21	18	23	36	1.95
30078--30107	16	1.9	16	93	6	53	13	20	0	66	1.24
32767--32821	20	2.7	21	88	2	85	12	23	21	41	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32767--32882	21	5.6	21	79	12	114	17	21	20	40	1.91
38272--38437	2	83.0	2	100	0	332	0	0	50	50	1.00
39451--39490	21	1.9	21	94	0	71	27	20	27	25	1.99
40009--40106	34	3.0	34	89	5	148	20	21	13	44	1.85
40811--40865	6	9.2	6	86	7	76	30	1	18	49	1.58
41731--41768	13	2.9	13	92	0	58	63	5	0	31	1.17
42221--42456	117	2.0	117	93	0	400	19	17	34	29	1.94
43943--43975	17	1.9	17	93	0	57	42	0	0	57	0.98
44694--44737	21	2.1	21	91	0	70	36	11	13	38	1.81
46762--46837	2	38.0	2	100	0	152	50	0	0	50	1.00
50705--50747	18	2.4	18	96	0	77	18	16	25	39	1.91
64915--64960	24	1.9	24	95	0	83	30	4	28	36	1.76
65007--65042	18	2.0	18	88	0	54	27	13	36	22	1.92
70051--70096	24	1.9	24	86	8	67	34	4	23	36	1.75
70140--70178	18	2.2	18	90	0	60	33	17	30	17	1.94

Tables:   1

The End!