Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002586.1 Hibiscus syriacus cultivar Beakdansim tig00005233_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  112978

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
321--366
20
2.4
20
85
7
60
50
6
13
30
1.66
1390--1466
21
3.6
21
82
10
95
22
38
16
22
1.93
1485--1576
20
4.6
20
97
0
166
15
30
23
30
1.95
1680--1719
20
1.9
21
85
10
55
37
37
10
15
1.80
1931--2000
34
2.1
32
84
5
86
32
15
28
22
1.95
9252--9324
7
9.9
7
75
19
60
65
2
1
30
1.15
9252--9324
20
3.3
22
73
19
71
65
2
1
30
1.15
9253--9315
13
4.8
13
70
21
51
65
3
1
30
1.18
10439--10512
36
2.1
36
87
2
105
40
29
12
17
1.86
18489--18522
17
2.1
16
88
5
50
32
2
5
58
1.37
18489--18522
16
2.1
17
88
5
52
32
2
5
58
1.37
21217--21280
33
1.9
33
93
0
110
34
20
28
17
1.95
21926--22091
53
2.9
54
74
15
163
41
6
5
46
1.51
23345--23373
15
2.0
15
93
6
51
58
13
13
13
1.63
25717--25751
14
2.4
14
90
4
52
11
62
14
11
1.54
26126--26227
28
3.5
28
74
11
89
39
9
9
41
1.71
39439--39464
13
2.0
13
100
0
52
7
53
30
7
1.57
40177--40221
11
4.0
11
88
8
56
60
0
0
40
0.97
40175--40221
3
16.3
3
82
8
62
59
0
0
40
0.97
40194--40250
21
2.7
22
76
7
57
49
0
0
50
1.00
40402--40813
76
5.4
76
95
0
725
34
21
21
21
1.96
41474--41528
22
2.5
22
90
0
92
40
12
10
36
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42969--43133
75
2.2
75
96
1
303
30
20
15
32
1.94
42997--43121
36
3.3
35
66
21
92
32
20
16
30
1.95
44208--44553
83
4.2
83
97
0
638
35
20
14
29
1.92
47169--47237
2
34.5
2
100
0
138
50
0
0
49
1.00
53002--53027
13
2.0
13
100
0
52
7
53
30
7
1.57
53274--53298
12
2.1
12
100
0
50
0
8
8
84
0.79
53734--53778
11
4.0
11
88
8
56
60
0
0
40
0.97
53732--53778
3
16.3
3
82
8
62
59
0
0
40
0.97
53751--53807
21
2.7
22
76
7
57
49
0
0
50
1.00
53863--54074
107
2.0
107
98
0
406
33
21
16
28
1.95
77790--77997
65
3.2
64
80
9
219
29
23
19
27
1.98
78838--78957
31
3.9
31
83
2
152
28
16
17
37
1.92
78836--78960
62
2.0
62
90
3
198
27
16
18
38
1.91
79575--79621
20
2.4
19
85
3
58
34
12
10
42
1.78
97778--97899
44
2.7
45
88
2
183
41
7
19
31
1.79
99011--99054
23
1.9
23
81
9
54
38
4
4
52
1.42
103993--104043
21
2.4
21
76
0
57
29
7
31
31
1.86
104184--104209
4
6.5
4
100
0
52
76
0
23
0
0.78
107101--107143
19
2.3
19
95
0
77
20
37
20
20
1.95
108356--108393
20
1.9
20
89
10
60
18
10
31
39
1.85
111471--111524
21
2.6
21
100
0
108
31
18
25
24
1.97

Tables:   1

The End!