Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002587.1 Hibiscus syriacus cultivar Beakdansim tig00005234_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72027

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
347--433
21
4.1
21
73
14
72
19
39
20
20
1.93
513--664
21
7.2
21
82
10
143
26
40
8
23
1.83
519--646
42
3.0
41
86
8
170
25
39
9
25
1.85
519--754
63
3.7
61
75
9
145
25
42
8
24
1.82
537--776
42
5.7
41
79
8
155
24
41
8
25
1.83
591--751
21
7.7
21
80
5
128
25
42
7
24
1.81
736--787
21
2.5
22
87
6
72
19
40
15
25
1.90
716--839
21
5.9
20
73
9
70
22
41
9
26
1.85
716--839
63
2.0
63
81
0
149
22
41
9
26
1.85
6781--6851
37
1.9
37
97
0
133
29
15
18
36
1.92
13761--13849
44
2.0
44
95
0
160
34
21
8
34
1.85
15927--16018
47
2.0
47
95
0
166
42
4
23
29
1.73
18510--18579
35
2.0
35
97
0
131
44
22
0
32
1.53
28087--28607
260
2.0
260
95
0
943
30
17
14
37
1.90
46128--46160
3
11.3
3
93
6
59
33
0
0
66
0.92
46128--46156
14
2.1
14
100
0
58
34
0
0
65
0.93
53039--53102
11
5.8
11
69
20
53
78
1
15
4
1.00
55402--55514
42
2.7
41
80
2
109
24
20
19
35
1.96
55896--55932
18
2.1
18
100
0
74
37
10
27
24
1.88
57862--57887
2
13.0
2
100
0
52
50
0
0
50
1.00
62224--62271
21
2.3
21
96
0
87
41
12
18
27
1.86
63086--63111
12
2.2
12
100
0
52
19
7
23
50
1.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65003--65039
2
18.5
2
100
0
74
51
0
0
48
1.00
67322--67355
14
2.4
14
95
0
59
35
32
8
23
1.86

Tables:   1

The End!