genome.fa.s2588.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002588.1 Hibiscus syriacus cultivar Beakdansim tig00005239_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93969

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1967--2009	22	2.0	22	86	4	61	13	27	25	32	1.94
6473--6522	21	2.4	22	74	19	61	34	2	2	62	1.18
7870--7894	5	5.0	5	100	0	50	20	0	0	80	0.72
13477--13522	23	2.0	23	100	0	92	21	17	34	26	1.95
15527--15567	18	2.3	19	79	12	50	63	0	9	26	1.25
17395--17479	18	4.7	18	94	0	143	17	25	31	24	1.97
20737--20825	31	2.8	31	91	5	135	24	20	20	34	1.96
20827--20863	18	2.1	18	89	0	56	18	18	29	32	1.96
22416--22459	20	2.2	20	87	0	61	20	27	20	31	1.97
22428--22477	20	2.5	20	93	0	82	18	30	22	30	1.97
29843--29972	20	6.9	19	72	18	78	23	26	20	30	1.99
30836--30880	23	2.0	23	81	0	54	60	0	2	37	1.09
31186--31237	26	2.0	26	100	0	104	42	15	15	26	1.87
31411--31528	40	2.9	39	69	14	96	31	19	17	31	1.95
31412--31612	84	2.4	83	85	4	248	31	16	16	34	1.92
33774--33818	22	2.0	22	82	4	54	35	31	22	11	1.89
34935--35030	32	3.0	32	79	14	126	29	17	18	34	1.94
35022--35114	30	3.1	30	92	1	143	20	21	27	30	1.98
35387--35432	2	23.0	2	90	0	74	45	2	2	50	1.26
38367--38411	22	2.0	22	82	4	54	31	31	26	11	1.91
39536--39631	32	3.0	32	79	14	126	29	17	18	34	1.94
39623--39715	30	3.1	30	92	1	143	20	21	27	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39985--40060	2	38.0	2	94	0	134	47	1	1	50	1.18
40799--41343	272	2.0	272	97	0	1018	26	6	26	39	1.81
44647--44742	47	2.0	47	97	0	183	30	10	18	40	1.84
50277--50317	20	2.0	20	90	0	64	29	17	14	39	1.89
50222--50382	77	2.1	77	91	0	259	28	14	19	37	1.91
56892--56925	2	17.0	2	100	0	68	50	0	0	50	1.00
57614--57646	13	2.5	13	90	9	50	36	18	3	42	1.66
58384--58422	20	2.0	20	94	0	69	35	25	17	20	1.95
61468--61499	16	2.0	17	88	11	50	34	6	3	56	1.40
65383--65427	23	2.0	23	86	0	63	31	17	11	40	1.85
66806--66902	31	3.2	31	68	24	80	32	21	6	39	1.78
66747--66929	60	3.0	60	82	6	203	33	22	5	38	1.78
67121--67233	59	1.9	59	81	0	136	42	6	19	31	1.76
75223--75317	41	2.3	43	80	7	106	29	15	23	31	1.95
75266--75463	83	2.4	83	79	3	209	33	19	20	26	1.97
75333--75464	41	3.2	41	68	10	124	34	19	20	25	1.96
75333--75503	83	2.1	83	86	2	236	34	19	21	23	1.96
82434--82497	21	3.0	21	86	0	92	39	18	40	1	1.60
82883--83050	43	3.9	43	72	18	136	32	21	19	26	1.97
82868--83025	86	1.8	86	82	15	202	33	20	20	25	1.97
82868--83053	86	2.2	86	79	13	195	31	20	20	27	1.97
83114--83173	15	3.9	15	77	14	59	10	16	26	46	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86077--86439	89	4.0	89	82	8	355	22	21	22	33	1.97
92736--92810	40	2.0	39	89	10	120	40	8	25	26	1.83
93803--93830	7	4.0	7	100	0	56	14	42	14	28	1.84

Tables:   1

The End!