Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000259.1 Hibiscus syriacus cultivar Beakdansim tig00000472_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68245

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1798--1843
2
23.5
2
95
4
85
47
0
0
52
1.00
1797--1844
23
2.1
23
100
0
96
45
0
0
54
0.99
4069--4161
9
9.8
9
71
14
53
77
6
4
11
1.10
4428--4491
30
2.3
27
82
15
69
75
1
1
21
0.98
5506--5535
5
5.8
5
96
4
51
76
0
0
23
0.78
5506--5549
17
2.8
16
86
6
54
70
0
0
29
0.88
6285--6610
86
3.8
85
84
2
422
25
19
21
34
1.96
6783--7143
65
5.8
64
83
9
478
25
13
20
39
1.90
6737--7147
122
3.4
122
91
3
647
25
13
20
39
1.90
6737--7147
123
3.4
120
89
4
573
25
13
20
39
1.90
13585--13730
74
2.0
74
87
2
213
29
3
8
58
1.45
13611--13754
75
1.9
75
87
5
211
27
2
9
60
1.41
14370--14415
16
2.7
17
86
6
58
21
2
2
73
1.04
14446--14480
16
2.3
15
90
5
52
37
2
0
60
1.12
14441--14480
15
2.6
16
84
7
57
32
5
0
62
1.17
20044--20090
19
2.3
20
92
7
78
10
0
4
85
0.74
20041--20092
21
2.5
22
87
9
81
11
0
3
84
0.74
20052--20092
9
4.4
9
82
17
57
9
0
2
87
0.62
21759--21906
76
2.0
75
86
6
210
28
3
10
58
1.47
22568--22599
16
2.0
16
100
0
64
25
0
6
68
1.12
24413--24449
18
2.1
18
100
0
74
37
10
21
29
1.88
27390--27598
99
2.1
99
88
1
303
31
16
17
33
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31589--31644
5
11.6
5
75
21
57
80
1
3
14
0.93
31593--31667
15
5.1
14
77
15
62
82
4
4
9
0.92
31594--31650
14
3.9
14
80
11
53
80
3
3
12
0.96
31589--31667
24
3.4
23
77
14
74
82
3
3
10
0.92
31598--31657
12
4.8
12
78
12
50
81
5
3
10
0.95
31593--31666
10
7.4
10
73
7
53
82
4
4
9
0.93
32066--32111
4
11.5
4
78
17
51
76
0
0
23
0.79
32065--32104
13
3.2
13
86
13
57
77
0
0
22
0.77
32065--32154
9
10.3
9
77
13
66
76
1
3
18
0.98
32066--32145
16
4.7
17
74
18
60
76
0
3
20
0.94
32065--32156
7
12.9
7
69
24
50
76
1
3
19
0.99
38607--38652
22
2.1
22
100
0
92
17
28
19
34
1.94
44283--44324
7
5.9
7
85
2
57
42
0
0
57
0.99
44306--44331
11
2.4
11
100
0
52
38
0
0
61
0.96
47126--47338
5
42.6
5
97
0
354
39
0
23
36
1.55
47597--47668
36
2.0
36
86
0
99
44
2
19
33
1.65
47598--47676
18
4.5
17
75
12
70
44
2
20
32
1.65
50190--50253
27
2.4
27
97
0
119
43
6
12
37
1.68
50947--51007
17
3.6
16
80
14
61
40
9
8
40
1.68
50912--51007
35
2.8
36
78
9
101
38
9
9
42
1.69
51108--51195
43
2.1
42
86
2
122
27
14
14
43
1.85
57494--57519
3
8.7
3
100
0
52
69
0
0
30
0.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57742--57818
34
2.2
34
81
6
93
36
11
10
41
1.76
59392--59481
44
2.0
44
100
0
180
32
21
20
26
1.97
59884--59987
37
2.8
36
84
5
111
50
26
11
10
1.71
62162--62202
10
4.1
10
84
12
57
31
29
0
39
1.57
62223--62251
14
2.1
14
93
6
51
27
6
0
65
1.18

Tables:   1

The End!