Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002590.1 Hibiscus syriacus cultivar Beakdansim tig00005243_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52718

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3160--3189
11
2.6
11
94
5
51
40
0
0
60
0.97
3487--3558
34
2.1
35
92
2
119
52
18
4
25
1.62
9151--9189
20
2.0
20
89
0
60
28
28
28
15
1.96
12289--12321
18
1.9
17
88
11
50
39
3
9
48
1.50
13107--13181
30
2.5
30
82
6
89
44
6
14
34
1.72
13133--13197
15
4.4
15
82
3
78
44
7
16
30
1.76
13133--13197
30
2.2
29
88
2
94
44
7
16
30
1.76
13525--13601
34
2.4
31
76
18
77
42
1
2
53
1.23
13646--13759
52
2.2
52
79
17
121
49
0
0
49
1.13
13660--13778
30
4.1
28
72
19
84
49
0
0
48
1.12
14226--14291
15
4.4
15
79
7
80
40
6
13
39
1.69
14241--14307
30
2.3
30
86
2
91
43
7
14
34
1.74
14536--14578
20
2.2
20
83
8
52
34
0
4
60
1.17
14673--14743
19
3.6
19
70
10
54
47
1
1
49
1.18
14798--14867
31
2.3
31
82
5
88
47
0
2
50
1.16
14814--14855
22
1.9
22
85
0
57
50
0
2
47
1.14
14752--14884
25
5.5
25
67
21
70
46
0
1
51
1.15
15090--15181
42
2.2
42
90
0
139
45
18
16
19
1.85
22430--22768
111
3.1
111
92
0
561
45
10
7
36
1.66
24454--24490
5
7.2
5
96
3
65
21
59
18
0
1.38
25139--25275
21
6.6
21
76
11
120
21
20
25
32
1.98
25115--25275
83
1.9
83
89
2
252
22
20
24
32
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30927--30967
8
5.2
8
82
5
57
34
0
29
36
1.58
31038--31485
128
3.5
128
95
0
817
23
23
19
33
1.97
32030--32102
21
3.5
21
94
0
119
20
30
31
17
1.96
43017--43091
10
7.7
10
67
21
52
56
22
12
9
1.64
43021--43085
16
4.1
16
93
0
112
55
24
12
7
1.63
44189--44241
14
4.1
14
81
18
78
50
26
15
7
1.70
44179--44240
24
2.6
24
94
0
106
53
24
12
9
1.69
47447--47485
16
2.4
16
91
4
60
35
23
7
33
1.83

Tables:   1

The End!