genome.fa.s2592.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002592.1 Hibiscus syriacus cultivar Beakdansim tig00005246_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72029

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5183--5292	14	7.4	14	67	24	57	20	4	0	74	1.04
5220--5290	4	17.8	4	70	21	51	18	5	0	76	0.98
5220--5312	17	5.5	17	69	22	61	17	7	1	74	1.11
5213--5292	23	3.5	22	81	8	88	17	5	0	77	0.94
8187--8280	27	3.4	27	72	18	77	75	5	17	2	1.08
8200--8280	13	6.1	12	72	17	54	76	4	16	2	1.06
9334--9409	32	2.4	32	84	0	89	32	15	21	30	1.94
10037--10095	21	3.1	21	68	27	67	30	18	5	45	1.71
10002--10118	36	3.2	36	87	1	162	30	19	11	38	1.87
10141--10245	37	2.9	36	82	4	138	27	17	12	42	1.85
10280--10395	37	3.2	36	81	6	135	30	18	12	39	1.87
10003--10485	138	3.5	139	91	1	740	27	18	12	41	1.86
10358--10553	101	1.9	101	89	2	304	26	19	13	40	1.88
11819--11865	25	1.9	24	83	12	60	12	10	2	74	1.16
12045--12091	24	2.0	24	95	0	85	25	36	17	21	1.94
19318--19366	20	2.5	20	100	0	98	26	42	4	26	1.73
21536--21581	18	2.5	18	92	3	74	36	15	15	32	1.88
22661--23387	91	8.0	90	88	1	963	38	14	20	25	1.92
22665--23385	273	2.6	271	88	2	1061	38	14	20	25	1.91
23476--23504	15	1.9	15	100	0	58	48	13	24	13	1.79
26472--26796	36	8.8	37	72	14	163	44	4	9	42	1.56
26544--26794	36	6.9	36	75	10	181	43	3	9	43	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26471--26791	112	2.9	111	88	3	452	43	4	9	42	1.56
26831--26913	39	2.2	38	86	6	114	51	3	4	39	1.40
33790--33831	21	2.0	21	95	0	75	69	9	7	14	1.37
33948--34003	24	2.3	24	93	0	103	28	16	16	39	1.89
47038--47066	5	5.8	5	100	0	58	20	58	0	20	1.39
53403--53428	12	2.2	12	100	0	52	38	30	15	15	1.88
56279--56315	13	2.8	13	87	0	56	16	43	18	21	1.88
56316--56382	29	2.3	29	86	0	89	25	7	26	40	1.82
56316--56391	29	2.6	28	81	8	80	25	6	26	42	1.79
63443--63487	9	4.6	10	78	15	58	15	22	28	33	1.95
63442--63480	11	3.8	11	80	19	57	17	20	25	35	1.95
63442--63487	20	2.4	19	92	3	74	17	21	28	32	1.96
63490--63524	13	2.7	13	95	0	61	17	45	17	20	1.85
63536--63602	29	2.3	29	86	0	89	25	7	26	40	1.82
63536--63611	29	2.6	28	81	8	80	25	6	26	42	1.79
67026--67184	64	2.5	64	84	8	200	28	18	22	29	1.98

Tables:   1

The End!