genome.fa.s2593.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002593.1 Hibiscus syriacus cultivar Beakdansim tig00005247_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95029

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4671--4731	23	2.9	21	85	7	70	22	36	26	14	1.93
4693--4754	22	2.8	21	85	7	70	22	35	24	17	1.95
8710--8828	51	2.3	53	82	10	138	48	11	1	37	1.50
10209--10249	20	2.0	20	100	0	82	4	14	14	65	1.42
10728--10757	2	15.0	2	100	0	60	50	0	0	50	1.00
23080--23197	50	2.4	50	85	2	148	31	9	17	41	1.81
23611--23660	21	2.4	21	76	6	57	26	24	14	36	1.93
23667--23722	21	2.7	21	100	0	112	39	21	23	16	1.92
23931--23974	22	2.0	22	95	0	79	20	45	15	18	1.85
24237--24295	20	3.0	20	87	0	73	16	18	22	42	1.89
24432--24486	25	2.2	24	78	15	58	20	9	18	52	1.71
25616--25663	18	2.7	18	96	0	87	27	43	12	16	1.84
26169--26234	20	3.4	19	77	6	60	40	22	19	16	1.91
26208--26286	19	4.4	19	75	15	78	48	18	17	15	1.82
26347--26421	20	3.8	20	89	1	98	17	25	22	34	1.96
26392--26447	20	2.8	20	88	0	76	23	16	28	32	1.96
26787--26876	41	2.2	42	89	2	146	23	40	15	21	1.91
28284--28322	14	2.8	14	84	0	51	35	0	17	46	1.49
28429--28503	34	2.2	34	87	0	105	41	24	21	13	1.88
28741--28817	20	3.8	20	96	0	136	27	20	28	23	1.99
28750--28858	20	5.4	20	84	6	121	23	19	27	29	1.98
28868--28942	21	3.7	20	77	10	71	33	18	22	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28752--28941	41	4.7	41	71	11	106	27	18	24	29	1.98
30358--30404	21	2.2	21	100	0	94	34	4	36	25	1.76
47064--47126	14	4.4	14	71	23	51	0	22	17	60	1.36
47067--47122	18	3.7	15	74	21	55	0	23	16	60	1.35
47477--47541	15	4.5	15	74	14	57	53	0	0	46	1.00
52961--53012	21	2.5	20	75	6	59	19	36	26	17	1.94
56056--56272	45	4.8	45	74	9	192	24	18	29	26	1.98
56056--56271	90	2.4	90	80	3	256	25	18	29	26	1.98
64064--64138	38	2.0	37	84	5	98	49	4	0	46	1.20
64156--64196	21	2.0	21	100	0	82	36	14	0	48	1.44
67455--67518	19	3.2	20	72	14	53	43	1	1	53	1.19
67464--67513	20	2.5	20	78	12	59	40	2	2	56	1.22
67431--67517	31	2.8	30	79	10	95	41	1	3	54	1.25
68240--68327	20	4.4	19	72	20	63	52	2	1	44	1.21
68235--68321	31	2.8	31	79	10	97	54	2	1	42	1.20
68230--68297	19	3.5	20	75	15	63	54	0	2	42	1.15
72834--72893	29	2.1	29	96	0	111	48	13	15	23	1.79
77517--77576	29	2.1	29	100	0	120	50	13	13	23	1.77
80038--80084	24	2.0	24	83	8	60	36	19	0	44	1.51
86472--86504	2	16.5	2	100	0	66	48	0	0	51	1.00
86689--86750	30	2.1	29	88	8	90	38	6	11	43	1.66
86695--86758	29	2.2	30	86	8	87	39	4	10	45	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87411--87497	36	2.5	35	88	7	131	41	3	8	47	1.50
87335--87601	146	1.8	144	95	2	491	42	5	6	45	1.53
91835--91879	5	8.4	5	87	7	54	15	6	0	77	0.96
93929--94191	95	2.7	94	86	8	350	32	18	17	31	1.94

Tables:   1

The End!