genome.fa.s2595.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002595.1 Hibiscus syriacus cultivar Beakdansim tig00005251_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104725

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6802--6843	9	4.4	9	78	21	50	9	2	2	85	0.77
6794--6841	20	2.3	21	89	10	73	10	2	4	83	0.87
6942--7031	28	3.4	28	69	17	82	40	14	24	21	1.90
6938--7050	52	2.2	52	93	0	190	40	15	23	19	1.90
6965--7050	24	3.4	24	67	17	66	41	16	24	17	1.89
8592--8756	76	2.2	75	86	3	233	30	2	10	55	1.47
8714--8776	19	3.2	19	75	4	54	31	0	12	55	1.37
9388--9428	21	1.9	22	90	5	66	19	4	0	75	0.98
19576--19639	4	16.0	4	100	0	128	25	0	25	50	1.50
19726--19775	24	2.1	24	100	0	100	34	12	16	38	1.85
28318--28432	42	2.7	42	94	0	194	18	16	18	46	1.84
28621--28681	22	2.8	23	82	7	65	47	0	0	52	1.00
28632--28710	31	2.5	32	80	16	92	48	1	0	50	1.08
28647--28749	54	1.9	52	84	11	138	48	0	0	49	1.14
28965--29034	20	3.5	20	96	0	131	35	14	10	40	1.79
28965--29043	40	2.0	40	89	0	122	35	15	8	40	1.78
29017--29098	15	5.5	15	85	2	112	35	18	7	39	1.78
29017--29098	30	2.8	30	90	1	130	35	18	7	39	1.78
29017--29104	45	2.0	44	93	2	149	32	18	6	42	1.76
30362--30422	21	3.0	20	74	11	61	14	18	27	39	1.90
30393--30433	20	2.0	20	95	0	73	7	24	21	46	1.77
30393--30442	20	2.5	20	90	0	64	8	24	22	46	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30536--30568	5	6.6	5	89	10	50	24	54	21	0	1.45
31388--31419	6	5.5	6	96	3	57	0	15	53	31	1.43
31481--31588	46	2.5	41	84	13	162	38	22	22	16	1.93
31497--31608	46	2.4	46	96	0	215	35	21	24	18	1.95
31594--31856	21	12.8	20	67	16	92	36	25	18	19	1.95
31615--31834	41	5.4	41	83	5	284	37	25	19	17	1.94
31548--31688	62	2.2	63	91	6	221	35	24	19	20	1.96
31701--31810	20	5.4	20	70	13	82	39	24	20	16	1.92
31594--31855	83	3.2	83	82	5	343	35	25	18	19	1.95
38039--38176	60	2.3	61	81	5	147	36	15	16	31	1.90
52326--52415	20	4.5	20	80	5	83	28	27	18	24	1.98
52336--52413	40	2.0	40	92	0	129	26	28	20	24	1.99
55535--55569	18	1.9	18	94	0	61	54	22	2	20	1.58
55629--55898	140	1.9	140	98	0	522	28	13	15	41	1.85
55869--56073	20	10.9	20	73	14	175	32	21	19	26	1.97
55869--56122	74	3.5	73	86	3	307	33	20	19	26	1.97
56117--56189	20	3.7	20	88	0	110	9	19	21	49	1.76
56270--56331	14	4.3	14	77	6	61	46	14	0	38	1.45
57785--57826	21	2.2	19	87	12	59	23	19	30	26	1.98
58318--58362	18	2.4	19	88	7	65	35	26	17	20	1.95
58409--58474	20	3.3	20	91	0	78	19	18	24	37	1.93
58665--58710	20	2.3	20	92	0	74	34	26	19	19	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58428--59288	329	2.6	328	90	3	1302	35	17	16	29	1.92
59086--59135	20	2.5	20	90	0	73	18	22	24	36	1.95
61026--61116	20	4.7	20	78	4	87	48	20	15	15	1.81
61723--61820	20	4.9	20	82	5	99	25	19	23	31	1.98
62128--62152	12	2.1	12	100	0	50	32	0	0	68	0.90
64784--64831	22	2.2	23	81	7	55	45	10	4	39	1.58
66898--66931	18	1.9	18	94	5	61	38	11	11	38	1.79
68059--68157	33	3.0	33	94	1	164	45	15	7	32	1.73
68152--68193	21	2.0	21	95	0	75	47	7	14	30	1.71
70584--70643	29	2.1	29	84	9	79	35	13	0	51	1.41
74893--74918	3	8.7	3	100	0	52	0	0	30	69	0.89
79480--79536	28	2.0	28	86	6	80	36	24	14	24	1.92
81891--81928	20	1.9	20	84	10	51	47	2	0	50	1.15
98882--99009	51	2.5	51	79	3	152	16	33	31	18	1.93
99021--99144	50	2.5	51	86	4	180	25	25	22	26	2.00
101422--101460	20	2.0	19	90	5	60	43	0	23	33	1.54
101573--101699	51	2.5	51	85	1	166	18	29	34	17	1.94

Tables:   1

The End!