genome.fa.s2596.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002596.1 Hibiscus syriacus cultivar Beakdansim tig00005252_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49108

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2830--2906	28	2.7	27	74	9	73	41	5	18	35	1.73
16927--17006	30	2.6	31	92	3	128	22	12	33	31	1.91
16961--17018	30	1.9	30	85	0	80	27	10	25	36	1.89
17748--17791	16	2.8	16	73	13	54	15	11	22	50	1.76
23879--23952	21	3.6	21	68	3	69	20	18	27	33	1.96
23878--23975	41	2.4	41	91	0	160	18	19	25	36	1.94
24106--24193	6	14.7	6	98	0	158	32	47	17	2	1.60
24702--24762	6	10.5	6	94	3	99	0	16	54	29	1.43
24845--24884	13	3.1	13	85	10	55	37	17	20	25	1.94
25219--25311	21	4.5	21	81	4	109	39	17	24	18	1.91
25300--25434	20	6.7	20	76	10	87	33	25	16	25	1.96
25219--25311	41	2.3	41	98	0	177	39	17	24	18	1.91
25297--25434	41	3.4	41	74	9	138	34	24	15	24	1.95
25602--25645	22	2.0	22	95	0	79	20	45	15	18	1.85
27266--27310	18	2.5	18	88	0	72	26	44	15	13	1.83
27792--27858	20	3.4	20	81	2	73	38	23	22	14	1.92
27847--27903	14	3.8	14	74	17	60	49	22	15	12	1.78
27831--27919	32	2.7	33	91	3	144	47	21	17	13	1.82
29918--30044	33	3.8	33	87	4	193	42	18	22	15	1.89
29919--30051	66	2.0	66	95	0	239	41	18	22	17	1.90
30044--30125	33	2.5	33	89	0	128	10	21	20	46	1.81
30074--30124	14	3.0	18	70	24	56	9	19	21	49	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30059--30115	14	3.7	14	72	20	51	7	22	22	47	1.75
30240--30276	14	2.6	14	91	0	65	45	24	0	29	1.53
31626--31692	21	3.2	21	68	4	55	19	20	35	23	1.95
31626--31748	42	2.9	41	79	7	113	22	18	36	21	1.95
31964--32150	91	2.0	90	89	6	286	47	18	12	21	1.82
32294--32435	63	2.3	63	85	2	160	28	37	15	19	1.92
32317--32447	63	2.1	63	97	0	244	25	37	16	20	1.93
33902--34022	19	6.8	19	72	19	109	45	19	23	11	1.83
33950--34005	14	3.6	14	74	21	58	42	23	25	8	1.82
33927--34022	33	2.9	33	96	0	174	43	21	23	10	1.84
34023--34067	19	2.4	19	84	0	63	6	15	26	51	1.68
34614--34727	20	5.7	20	83	2	111	25	18	24	31	1.97
34614--34730	61	1.9	61	85	0	162	24	17	23	33	1.97
34614--34748	61	2.2	61	81	5	157	23	19	23	33	1.97
34798--34838	21	2.0	21	85	0	55	34	31	17	17	1.93
36301--36648	112	3.1	112	89	2	536	31	11	12	43	1.79
37057--37322	112	2.4	112	92	0	433	31	10	12	45	1.75
35956--37738	674	2.6	676	91	3	2855	38	8	9	42	1.70
38026--38098	32	2.4	31	84	10	98	47	0	9	42	1.36
45495--45536	13	3.0	14	80	13	50	14	2	4	78	1.01
46674--46718	12	3.9	12	80	8	58	82	0	17	0	0.68
46667--46718	25	2.1	24	86	10	70	80	0	17	1	0.80

Tables:   1

The End!