Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002599.1 Hibiscus syriacus cultivar Beakdansim tig00005257_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  106672

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9574--9599
5
5.2
5
100
0
52
19
0
19
61
1.35
10083--10156
30
2.5
30
93
0
121
36
10
31
21
1.88
12320--12408
22
3.9
22
74
14
74
75
3
2
19
1.05
12320--12402
12
7.1
12
73
16
59
77
2
1
19
0.95
12320--12393
5
13.0
6
82
12
70
78
2
1
17
0.94
13519--13561
20
2.2
20
91
4
70
46
20
2
30
1.63
15006--15049
20
2.2
20
92
4
72
34
0
4
61
1.16
17567--17594
2
14.0
2
100
0
56
50
0
0
50
1.00
21117--21156
2
20.0
2
84
0
53
0
57
0
42
0.98
21117--21156
12
3.3
12
89
0
62
0
57
0
42
0.98
22657--22698
22
1.9
22
85
0
57
23
11
9
54
1.66
24575--24601
2
13.5
2
100
0
54
48
0
0
51
1.00
26522--26554
12
2.8
12
100
0
66
54
0
9
36
1.32
30547--30616
13
5.4
13
73
13
63
65
12
2
18
1.38
30554--30642
26
3.5
26
89
6
128
64
12
3
20
1.42
30745--30776
3
10.7
3
93
0
55
31
37
0
31
1.58
32462--32495
9
3.9
9
84
7
52
61
2
0
35
1.11
32458--32502
17
2.8
16
90
6
72
64
2
0
33
1.06
39464--39498
2
17.5
2
100
0
70
51
0
0
48
1.00
40054--40119
22
3.0
22
76
8
62
72
1
7
18
1.15
46713--46737
5
5.0
5
100
0
50
20
0
40
40
1.52
55213--55243
15
2.1
15
93
0
53
45
0
0
54
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55615--55643
7
4.1
7
100
0
58
27
31
13
27
1.94
64917--65100
85
2.2
82
85
4
235
32
1
10
55
1.44
67802--67831
13
2.3
13
94
0
51
53
6
3
36
1.44
69735--69821
23
3.8
23
89
3
113
22
21
32
22
1.98
73630--73669
21
1.9
21
89
0
62
37
7
2
52
1.43
76526--76580
2
27.5
2
100
0
110
50
0
0
49
1.00
84888--84956
3
22.7
3
85
8
95
36
0
0
63
0.94
86547--86588
20
2.2
19
86
4
57
35
0
0
64
0.94
86445--86680
120
2.0
119
81
5
280
38
8
7
45
1.62
94143--94225
44
2.0
42
88
9
125
18
3
9
68
1.32
96151--96308
47
3.5
45
81
9
171
25
3
8
62
1.40
96389--96420
16
2.0
16
93
0
55
34
25
15
25
1.95

Tables:   1

The End!