Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000026.1 Hibiscus syriacus cultivar Beakdansim tig00000044_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  105645

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5068--5111
22
2.0
21
86
4
61
18
6
4
70
1.27
6500--6540
21
2.0
21
100
0
82
39
29
24
7
1.82
9385--9431
21
2.2
21
100
0
94
8
27
12
51
1.69
11762--11822
15
4.2
14
81
6
68
22
9
0
67
1.20
11762--11850
5
17.6
5
78
6
54
23
8
1
66
1.27
18801--18838
16
2.4
16
90
0
58
39
23
18
18
1.92
19342--20380
519
2.0
518
96
0
1900
35
22
4
37
1.76
24412--24472
26
2.3
26
83
13
72
60
8
0
31
1.26
29307--29408
26
4.4
24
75
16
72
36
0
1
60
1.14
29344--29408
26
2.7
24
80
7
78
33
0
1
64
1.03
33524--33597
5
14.8
5
78
12
64
2
20
1
75
1.00
33549--33597
18
2.8
17
84
6
71
0
22
2
75
0.90
46583--46640
27
2.1
27
96
0
107
18
18
22
39
1.92
50126--50156
15
2.1
15
100
0
62
45
6
25
22
1.76
53010--53058
5
9.8
5
93
0
80
2
40
36
20
1.64
53056--53182
6
21.2
6
98
0
191
5
16
49
28
1.68
53431--53455
12
2.1
12
100
0
50
36
16
24
24
1.94
53469--53523
22
2.5
22
75
0
56
29
9
23
38
1.85
59050--59088
5
7.8
5
91
0
51
5
41
35
17
1.72
59086--59146
6
10.2
6
96
0
95
4
16
49
29
1.66
59420--59474
22
2.5
22
75
0
56
29
9
23
38
1.85
61216--61373
21
7.8
20
70
7
77
37
25
17
18
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61341--61533
20
9.6
20
83
5
237
34
26
19
19
1.95
61913--61983
33
2.2
33
94
0
124
11
23
16
47
1.79
62063--62139
21
3.7
21
81
6
102
48
16
22
12
1.80
62124--62180
14
3.7
14
75
20
60
43
22
24
8
1.81
62117--62196
33
2.4
33
95
0
142
47
22
21
8
1.78
62192--62317
19
7.1
19
67
23
69
11
24
18
45
1.83
62197--62317
33
3.5
33
81
15
138
11
23
18
46
1.82
62256--62317
20
3.0
21
80
4
90
11
25
16
46
1.80
66541--66571
15
2.1
15
100
0
62
45
6
25
22
1.76
69435--69493
5
11.8
5
94
0
82
5
40
37
16
1.71
69491--69606
6
19.3
6
98
0
187
4
17
49
29
1.66
69880--69934
22
2.5
22
75
0
56
29
9
23
38
1.85
75506--75821
93
3.4
93
99
0
614
22
13
18
45
1.85
75937--75993
14
3.7
14
72
20
51
43
24
22
8
1.81
75951--76042
19
5.4
18
72
24
65
46
28
17
7
1.75
75919--76042
33
3.7
33
91
1
185
45
27
17
8
1.78
75968--76026
14
3.9
14
76
20
64
47
28
16
6
1.72
76038--76194
19
8.8
19
72
13
127
10
19
22
46
1.81
76043--76135
33
2.8
33
86
0
141
12
19
21
46
1.83
76038--76194
33
4.4
38
77
8
136
10
19
22
46
1.81
78132--78167
14
2.6
14
95
0
63
33
0
22
44
1.53
78274--78389
19
6.7
18
77
17
113
44
18
23
13
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
78274--78389
51
2.2
53
95
3
209
44
18
23
13
1.85
78380--78674
72
4.2
70
77
15
277
14
22
18
44
1.85
78385--78655
53
5.1
53
90
7
421
13
22
17
45
1.84
80939--80963
12
2.1
12
100
0
50
0
28
0
72
0.86
81137--81183
24
2.0
24
87
8
69
38
21
14
25
1.92
81876--82104
20
11.4
20
84
1
226
19
17
25
37
1.94
83713--83746
17
2.0
17
100
0
68
47
0
0
52
1.00
88292--88320
12
2.3
13
94
5
51
82
6
10
0
0.83
94737--94788
15
3.5
15
83
0
50
11
46
1
40
1.51
96929--97041
8
15.6
7
68
21
56
63
3
0
31
1.17
96885--96954
35
2.0
36
83
8
90
52
4
2
40
1.36
97873--97905
17
1.9
17
88
11
50
66
0
0
33
0.92
99148--99185
19
2.1
19
85
5
51
39
5
0
55
1.23

Tables:   1

The End!