Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000260.1 Hibiscus syriacus cultivar Beakdansim tig00000477_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5583615
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 21 of 26
Found at i:4246119 original size:30 final size:30
Alignment explanation
Indices: 4246083--4246162 Score: 133
Period size: 30 Copynumber: 2.7 Consensus size: 30
4246073 TTAACTTTTT
*
4246083 GGTCAAAGTTAACGGTCAACGGTTTGACTC
1 GGTCAAAGTTAACGGTCAACGGTTTAACTC
4246113 GGTCAAAGTTAACGGTCAACGGTTTAACTC
1 GGTCAAAGTTAACGGTCAACGGTTTAACTC
* *
4246143 GGTCAAAGTCAACAGTCAAC
1 GGTCAAAGTTAACGGTCAAC
4246163 AGTCAATGGT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 47 1.00
ACGTcount: A:0.31, C:0.21, G:0.24, T:0.24
Consensus pattern (30 bp):
GGTCAAAGTTAACGGTCAACGGTTTAACTC
Found at i:4246168 original size:37 final size:37
Alignment explanation
Indices: 4246114--4246192 Score: 97
Period size: 37 Copynumber: 2.2 Consensus size: 37
4246104 GTTTGACTCG
* * *
4246114 GTCAA-AGTTAACGGTCAACGGTTTAACTCGGTCAAA
1 GTCAACAGTCAACAGTCAACGGTATAACTCGGTCAAA
* * *
4246150 GTCAACAGTCAACAGTCAATGGTATGACTTGGTCAAA
1 GTCAACAGTCAACAGTCAACGGTATAACTCGGTCAAA
4246187 GTCAAC
1 GTCAAC
4246193 GAGTTGACCA
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
36 5 0.14
37 31 0.86
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (37 bp):
GTCAACAGTCAACAGTCAACGGTATAACTCGGTCAAA
Found at i:4246266 original size:13 final size:13
Alignment explanation
Indices: 4246248--4246277 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
4246238 TGACTCAGTC
4246248 GGCTCAGCTCAAT
1 GGCTCAGCTCAAT
*
4246261 GGCTCAGCTCGAT
1 GGCTCAGCTCAAT
4246274 GGCT
1 GGCT
4246278 GGTCTCGACG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.17, C:0.30, G:0.30, T:0.23
Consensus pattern (13 bp):
GGCTCAGCTCAAT
Found at i:4248423 original size:153 final size:155
Alignment explanation
Indices: 4248145--4248452 Score: 602
Period size: 153 Copynumber: 2.0 Consensus size: 155
4248135 AAAAATTCTA
4248145 AAATATATAAAAATTTGAAACTTCTACAACCTGCCCTCGTTTAGATCCATCCATGCATGCACGAG
1 AAATATATAAAAATTTGAAACTTCTACAACCTGCCCTCGTTTAGATCCATCCATGCATGCACGAG
4248210 TACGAACAAGTCGAGATCTTTGAGTACGAAACATTGATAGTTAAAAGGATCAAAATCACGAAACA
66 TACGAACAAGTCGAGATCTTTGAGTACGAAACATTGATAGTTAAAAGGATCAAAATCACGAAACA
4248275 TCGA-TGCTTT-TTATGAGTCACGT
131 TCGACTGCTTTATTATGAGTCACGT
4248298 AAATATATAAAAATTTGAAACTTCTACAACCTGCCCTCGTTTAGATCCATCCATGCATGCACGAG
1 AAATATATAAAAATTTGAAACTTCTACAACCTGCCCTCGTTTAGATCCATCCATGCATGCACGAG
4248363 TACGAACAAGTCGAGATCTTTGAGTACGAAACATTGATAGTTAAAAGGATCAAAATCACGAAACA
66 TACGAACAAGTCGAGATCTTTGAGTACGAAACATTGATAGTTAAAAGGATCAAAATCACGAAACA
4248428 TCGACTGCTTTATTATGAGTCACGT
131 TCGACTGCTTTATTATGAGTCACGT
4248453 GCGATTATTA
Statistics
Matches: 153, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
153 134 0.88
154 6 0.04
155 13 0.08
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.27
Consensus pattern (155 bp):
AAATATATAAAAATTTGAAACTTCTACAACCTGCCCTCGTTTAGATCCATCCATGCATGCACGAG
TACGAACAAGTCGAGATCTTTGAGTACGAAACATTGATAGTTAAAAGGATCAAAATCACGAAACA
TCGACTGCTTTATTATGAGTCACGT
Found at i:4251860 original size:18 final size:18
Alignment explanation
Indices: 4251837--4251877 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
4251827 AGAATGTAAC
*
4251837 ATTACCGGCGGGAATAGG
1 ATTACCGGCGGGAATAAG
*
4251855 ATTACCGGCTGGAATAAG
1 ATTACCGGCGGGAATAAG
4251873 ATTAC
1 ATTAC
4251878 TGGGAATGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (18 bp):
ATTACCGGCGGGAATAAG
Found at i:4252402 original size:24 final size:24
Alignment explanation
Indices: 4252374--4252430 Score: 114
Period size: 24 Copynumber: 2.4 Consensus size: 24
4252364 AAATACCACT
4252374 GTTGGGAATAAAGGATTACCAAGG
1 GTTGGGAATAAAGGATTACCAAGG
4252398 GTTGGGAATAAAGGATTACCAAGG
1 GTTGGGAATAAAGGATTACCAAGG
4252422 GTTGGGAAT
1 GTTGGGAAT
4252431 GTTTGCAATC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.35, C:0.07, G:0.35, T:0.23
Consensus pattern (24 bp):
GTTGGGAATAAAGGATTACCAAGG
Found at i:4252736 original size:3 final size:3
Alignment explanation
Indices: 4252728--4252795 Score: 129
Period size: 3 Copynumber: 23.0 Consensus size: 3
4252718 TTGTACAAGA
4252728 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-T TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
4252775 TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT
4252796 AAACAATTAT
Statistics
Matches: 64, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
2 2 0.03
3 62 0.97
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:4256434 original size:72 final size:72
Alignment explanation
Indices: 4256303--4256436 Score: 191
Period size: 72 Copynumber: 1.9 Consensus size: 72
4256293 ATGGATGTGC
* * * **
4256303 ATCGTTTCACTACTCTTTTGTGAAGGCTTGATTTATATCGCTTCACTACTCTTTTGTGAAGGCTT
1 ATCGCTTCACTACTCTTTTGTGAAGGCTTGATTGATATCGCTTCACCACTCTTCCGTGAAGGCTT
4256368 GATTTAT
66 GATTTAT
4256375 ATCGCTTCACTACTCTTTTGTGAAGGCTTGATTCGA-AT-GACTTCACCACTCTTCCGTGAAGG
1 ATCGCTTCACTACTCTTTTGTGAAGGCTTGATT-GATATCG-CTTCACCACTCTTCCGTGAAGG
4256437 TCAGATTCGA
Statistics
Matches: 55, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
71 1 0.02
72 53 0.96
73 1 0.02
ACGTcount: A:0.20, C:0.22, G:0.18, T:0.40
Consensus pattern (72 bp):
ATCGCTTCACTACTCTTTTGTGAAGGCTTGATTGATATCGCTTCACCACTCTTCCGTGAAGGCTT
GATTTAT
Found at i:4256436 original size:36 final size:36
Alignment explanation
Indices: 4256270--4256407 Score: 222
Period size: 36 Copynumber: 3.8 Consensus size: 36
4256260 ATATGTTCCT
* * * **
4256270 GCTTCACTACTCTTTTGTGAAGGATGGATGTGCATC
1 GCTTCACTACTCTTTTGTGAAGGCTTGATTTATATC
*
4256306 GTTTCACTACTCTTTTGTGAAGGCTTGATTTATATC
1 GCTTCACTACTCTTTTGTGAAGGCTTGATTTATATC
4256342 GCTTCACTACTCTTTTGTGAAGGCTTGATTTATATC
1 GCTTCACTACTCTTTTGTGAAGGCTTGATTTATATC
4256378 GCTTCACTACTCTTTTGTGAAGGCTTGATT
1 GCTTCACTACTCTTTTGTGAAGGCTTGATT
4256408 CGAATGACTT
Statistics
Matches: 95, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
36 95 1.00
ACGTcount: A:0.19, C:0.19, G:0.20, T:0.43
Consensus pattern (36 bp):
GCTTCACTACTCTTTTGTGAAGGCTTGATTTATATC
Found at i:4260752 original size:33 final size:33
Alignment explanation
Indices: 4260715--4260786 Score: 99
Period size: 33 Copynumber: 2.2 Consensus size: 33
4260705 TTATATTTTC
*
4260715 ATTTGGGCCTTCAGGTTGTAATTTAGACTTCAT
1 ATTTGGGCATTCAGGTTGTAATTTAGACTTCAT
* * * *
4260748 ATTTGGTCATTCGGGTTGTAATTTGGGCTTCAT
1 ATTTGGGCATTCAGGTTGTAATTTAGACTTCAT
4260781 ATTTGG
1 ATTTGG
4260787 TCCTGTAAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.18, C:0.12, G:0.25, T:0.44
Consensus pattern (33 bp):
ATTTGGGCATTCAGGTTGTAATTTAGACTTCAT
Found at i:4260840 original size:13 final size:13
Alignment explanation
Indices: 4260800--4260846 Score: 60
Period size: 13 Copynumber: 3.7 Consensus size: 13
4260790 TGTAAAATTG
4260800 TAATAAT-TAATA
1 TAATAATATAATA
* *
4260812 TAATAATACAAAA
1 TAATAATATAATA
*
4260825 TAATAATATATTA
1 TAATAATATAATA
4260838 TAATAATAT
1 TAATAATAT
4260847 TATAATACTT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
12 7 0.24
13 22 0.76
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (13 bp):
TAATAATATAATA
Found at i:4261079 original size:36 final size:36
Alignment explanation
Indices: 4261039--4261131 Score: 159
Period size: 36 Copynumber: 2.6 Consensus size: 36
4261029 CTGTTCCTGC
*
4261039 TTCACTACTCTTTTGTGAAGGCTTGATTCGAATGAT
1 TTCACTTCTCTTTTGTGAAGGCTTGATTCGAATGAT
4261075 TTCACTTCTCTTTTGTGAAGGCTTGATTCGAATGAT
1 TTCACTTCTCTTTTGTGAAGGCTTGATTCGAATGAT
**
4261111 TTCACTTCTCTTACGTGAAGG
1 TTCACTTCTCTTTTGTGAAGG
4261132 ACAGATTCGA
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 54 1.00
ACGTcount: A:0.20, C:0.18, G:0.19, T:0.42
Consensus pattern (36 bp):
TTCACTTCTCTTTTGTGAAGGCTTGATTCGAATGAT
Found at i:4261139 original size:36 final size:36
Alignment explanation
Indices: 4261039--4261150 Score: 127
Period size: 36 Copynumber: 3.1 Consensus size: 36
4261029 CTGTTCCTGC
* ** *
4261039 TTCACTACTCTTTTGTGAAGGCTTGATTCGAATGAT
1 TTCACTTCTCTTACGTGAAGGCTAGATTCGAATGAT
** *
4261075 TTCACTTCTCTTTTGTGAAGGCTTGATTCGAATGAT
1 TTCACTTCTCTTACGTGAAGGCTAGATTCGAATGAT
4261111 TTCACTTCTCTTACGTGAAGGAC-AGATTCGAGATTGAT
1 TTCACTTCTCTTACGTGAAGG-CTAGATTCGA-A-TGAT
4261149 TT
1 TT
4261151 GCTTCCACTA
Statistics
Matches: 69, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
36 61 0.88
37 2 0.03
38 6 0.09
ACGTcount: A:0.22, C:0.17, G:0.20, T:0.41
Consensus pattern (36 bp):
TTCACTTCTCTTACGTGAAGGCTAGATTCGAATGAT
Found at i:4264248 original size:13 final size:13
Alignment explanation
Indices: 4264215--4264254 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
4264205 TTGTAATACT
4264215 TAATATAATAATA
1 TAATATAATAATA
* *
4264228 CAAAATAATAATA
1 TAATATAATAATA
*
4264241 TATTATAATAATA
1 TAATATAATAATA
4264254 T
1 T
4264255 TATAATACTT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.38
Consensus pattern (13 bp):
TAATATAATAATA
Found at i:4264802 original size:18 final size:17
Alignment explanation
Indices: 4264781--4264814 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
4264771 AATTTCTATT
4264781 TATCAAATAATTTAATTA
1 TATCAAATAA-TTAATTA
4264799 TATCAAATAATTAATT
1 TATCAAATAATTAATT
4264815 TCAAGCAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (17 bp):
TATCAAATAATTAATTA
Found at i:4273196 original size:27 final size:27
Alignment explanation
Indices: 4273166--4273223 Score: 116
Period size: 27 Copynumber: 2.1 Consensus size: 27
4273156 TAATCTTTTT
4273166 CTCCCCTATTTTAAAAGTAATTGTCAA
1 CTCCCCTATTTTAAAAGTAATTGTCAA
4273193 CTCCCCTATTTTAAAAGTAATTGTCAA
1 CTCCCCTATTTTAAAAGTAATTGTCAA
4273220 CTCC
1 CTCC
4273224 TTGAAATCCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (27 bp):
CTCCCCTATTTTAAAAGTAATTGTCAA
Found at i:4278444 original size:21 final size:22
Alignment explanation
Indices: 4278384--4278450 Score: 59
Period size: 21 Copynumber: 3.1 Consensus size: 22
4278374 CTAAACGTCT
* *
4278384 AAAAGGGATGGATTCTTTTTTC
1 AAAAGGGATCGATTCATTTTTC
* * *
4278406 TAAA-GGAT-TAATCATTTTTC
1 AAAAGGGATCGATTCATTTTTC
4278426 AAAAGGGATCGATTC-TTTTTAC
1 AAAAGGGATCGATTCATTTTT-C
4278448 AAA
1 AAA
4278451 TGGATCGGTC
Statistics
Matches: 35, Mismatches: 7, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
20 12 0.34
21 13 0.37
22 10 0.29
ACGTcount: A:0.34, C:0.10, G:0.16, T:0.39
Consensus pattern (22 bp):
AAAAGGGATCGATTCATTTTTC
Found at i:4285453 original size:161 final size:160
Alignment explanation
Indices: 4285188--4285694 Score: 630
Period size: 161 Copynumber: 3.1 Consensus size: 160
4285178 TTCGTCAACA
* * *
4285188 GTTAAATACCTTTGAGTAAAATATTAATTGTCTAGCTT-TGCATTTGATAGAAA-TGTGTCAATT
1 GTTAAATACCTTTGAGTAAAAGATTAATTGCCTAG-TTGTGCATTTGATAAAAAGT-TGTCAATT
* * * *
4285251 ATGCCAGTTAGATGAAAGGTTAAATACCTTAGAGTAAAAGATTAATTGTCTAGCTGTGTATTTGA
64 ATGCCAGTTAGATGAAAGGTTAAAGACCTTTGAGTAAAAGATTAATTGCCTAGCTGTGCATTTGA
4285316 ATAAAAGGTGTCAATTATGCAGTTAGATGAAAG
129 A-AAAAGGTGTCAATTATGCAGTTAGATGAAAG
* *
4285349 GTTAAATACCTTTGAGTAAAAGATTAATCGCCTAGTTGTGCATTTGATAAAAAGTTATCAATTAT
1 GTTAAATACCTTTGAGTAAAAGATTAATTGCCTAGTTGTGCATTTGATAAAAAGTTGTCAATTAT
*
4285414 TCCAGTTAGATGAAAGGTTAAAGACCTTTGAGTAAAAGATTAATTGCCTAGCTGTGCATTTGACA
66 GCCAGTTAGATGAAAGGTTAAAGACCTTTGAGTAAAAGATTAATTGCCTAGCTGTGCATTTGA-A
*
4285479 GAAAA-GTGTCAATTATGCCAGTTAAATGAAAG
130 -AAAAGGTGTCAATTATG-CAGTTAGATGAAAG
** * * * * *
4285511 GTTAAATGTCTTTGAGTAAAAGATTAATTACCTAGCTGTGCATTTGA-CAGAAGGTGTCAATTAT
1 GTTAAATACCTTTGAGTAAAAGATTAATTGCCTAGTTGTGCATTTGATAAAAAGTTGTCAATTAT
* * *
4285575 GCCAGTTAGATGAAAGGCTAAATG-CCTTTGAGTTAAAGATTTAA-TGCCTAGCTATGCATTTGG
66 GCCAGTTAGATGAAAGGTTAAA-GACCTTTGAGTAAAAGA-TTAATTGCCTAGCTGTGCATTT-G
* * * *
4285638 CAGAAAGGTGTCAATCATACAAGTTAGATGAAAG
128 AAAAAAGGTGTCAATTATGC-AGTTAGATGAAAG
* * *
4285672 GATAAATGCCTTTGGGTAAAAGA
1 GTTAAATACCTTTGAGTAAAAGA
4285695 CTAAATGCTT
Statistics
Matches: 304, Mismatches: 33, Indels: 18
0.86 0.09 0.05
Matches are distributed among these distances:
160 6 0.02
161 231 0.76
162 67 0.22
ACGTcount: A:0.36, C:0.11, G:0.21, T:0.33
Consensus pattern (160 bp):
GTTAAATACCTTTGAGTAAAAGATTAATTGCCTAGTTGTGCATTTGATAAAAAGTTGTCAATTAT
GCCAGTTAGATGAAAGGTTAAAGACCTTTGAGTAAAAGATTAATTGCCTAGCTGTGCATTTGAAA
AAAGGTGTCAATTATGCAGTTAGATGAAAG
Found at i:4285635 original size:242 final size:242
Alignment explanation
Indices: 4285188--4285694 Score: 696
Period size: 242 Copynumber: 2.1 Consensus size: 242
4285178 TTCGTCAACA
* * * * * *
4285188 GTTAAATACCTTTGAGTAAAATATTAATTGTCTAGCTTTGCATTTGATAGAAATGTGTCAATTAT
1 GTTAAAGACCTTTGAGTAAAAGATTAATTGCCTAGCTGTGCATTTGACAGAAAAGTGTCAATTAT
* ** * *
4285253 GCCAGTTAGATGAAAGGTTAAATACCTTAGAGTAAAAGATTAATTGTCTAGCTGTGTATTTGAAT
66 GCCAGTTAAATGAAAGGTTAAATACCTTAGAGTAAAAGATTAATTACCTAGCTGTGCATTTGAAC
*
4285318 AAAAGGTGTCAATTATGCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGATTAATCGCCTA
131 AAAAGGTGTCAATTATGCAGTTAGATGAAAGGCTAAATACCTTTGAGTAAAAGATTAATCGCCTA
* * * * * * *
4285383 GTTGTGCATTTGATAAAAAGTTATCAATTATTCCAGTTAGATGAAAG
196 GCTATGCATTTGACAAAAAGGTATCAATCATACAAGTTAGATGAAAG
4285430 GTTAAAGACCTTTGAGTAAAAGATTAATTGCCTAGCTGTGCATTTGACAGAAAAGTGTCAATTAT
1 GTTAAAGACCTTTGAGTAAAAGATTAATTGCCTAGCTGTGCATTTGACAGAAAAGTGTCAATTAT
** *
4285495 GCCAGTTAAATGAAAGGTTAAATGTCTTTGAGTAAAAGATTAATTACCTAGCTGTGCATTTG-AC
66 GCCAGTTAAATGAAAGGTTAAATACCTTAGAGTAAAAGATTAATTACCTAGCTGTGCATTTGAAC
* * *
4285559 AGAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAATGCCTTTGAGTTAAAGATTTAAT-GCC
131 AAAAGGTGTCAATTATG-CAGTTAGATGAAAGGCTAAATACCTTTGAGTAAAAGA-TTAATCGCC
* * *
4285623 TAGCTATGCATTTGGCAGAAAGGTGTCAATCATACAAGTTAGATGAAAG
194 TAGCTATGCATTTGACAAAAAGGTATCAATCATACAAGTTAGATGAAAG
* *
4285672 GATAAATG-CCTTTGGGTAAAAGA
1 GTTAAA-GACCTTTGAGTAAAAGA
4285695 CTAAATGCTT
Statistics
Matches: 232, Mismatches: 30, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
241 17 0.07
242 209 0.90
243 6 0.03
ACGTcount: A:0.36, C:0.11, G:0.21, T:0.33
Consensus pattern (242 bp):
GTTAAAGACCTTTGAGTAAAAGATTAATTGCCTAGCTGTGCATTTGACAGAAAAGTGTCAATTAT
GCCAGTTAAATGAAAGGTTAAATACCTTAGAGTAAAAGATTAATTACCTAGCTGTGCATTTGAAC
AAAAGGTGTCAATTATGCAGTTAGATGAAAGGCTAAATACCTTTGAGTAAAAGATTAATCGCCTA
GCTATGCATTTGACAAAAAGGTATCAATCATACAAGTTAGATGAAAG
Found at i:4285702 original size:81 final size:81
Alignment explanation
Indices: 4285188--4285694 Score: 664
Period size: 81 Copynumber: 6.3 Consensus size: 81
4285178 TTCGTCAACA
* * * * * *
4285188 GTTAAATACCTTTGAGTAAAATATTAATTGTCTAGCTTTGCATTTGATAGAAATGTGTCAATTAT
1 GTTAAATGCCTTTGAGTAAAAGATTAATTGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATTAT
4285253 GCCAGTTAGATGAAAG
66 GCCAGTTAGATGAAAG
* * * * *
4285269 GTTAAATACCTTAGAGTAAAAGATTAATTGTCTAGCTGTGTATTTGA-ATAAAAGGTGTCAATTA
1 GTTAAATGCCTTTGAGTAAAAGATTAATTGCCTAGCTGTGCATTTGACA-GAAAGGTGTCAATTA
4285333 TG-CAGTTAGATGAAAG
65 TGCCAGTTAGATGAAAG
* * * * * * *
4285349 GTTAAATACCTTTGAGTAAAAGATTAATCGCCTAGTTGTGCATTTGATAAAAAGTTATCAATTAT
1 GTTAAATGCCTTTGAGTAAAAGATTAATTGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATTAT
*
4285414 TCCAGTTAGATGAAAG
66 GCCAGTTAGATGAAAG
*
4285430 GTTAAA-GACCTTTGAGTAAAAGATTAATTGCCTAGCTGTGCATTTGACAGAAAAGTGTCAATTA
1 GTTAAATG-CCTTTGAGTAAAAGATTAATTGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATTA
*
4285494 TGCCAGTTAAATGAAAG
65 TGCCAGTTAGATGAAAG
* *
4285511 GTTAAATGTCTTTGAGTAAAAGATTAATTACCTAGCTGTGCATTTGACAG-AAGGTGTCAATTAT
1 GTTAAATGCCTTTGAGTAAAAGATTAATTGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATTAT
4285575 GCCAGTTAGATGAAAG
66 GCCAGTTAGATGAAAG
* * * * *
4285591 GCTAAATGCCTTTGAGTTAAAGATTTAA-TGCCTAGCTATGCATTTGGCAGAAAGGTGTCAATCA
1 GTTAAATGCCTTTGAGTAAAAGA-TTAATTGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATTA
* *
4285655 TACAAGTTAGATGAAAG
65 TGCCAGTTAGATGAAAG
* *
4285672 GATAAATGCCTTTGGGTAAAAGA
1 GTTAAATGCCTTTGAGTAAAAGA
4285695 CTAAATGCTT
Statistics
Matches: 379, Mismatches: 40, Indels: 14
0.88 0.09 0.03
Matches are distributed among these distances:
80 138 0.36
81 240 0.63
82 1 0.00
ACGTcount: A:0.36, C:0.11, G:0.21, T:0.33
Consensus pattern (81 bp):
GTTAAATGCCTTTGAGTAAAAGATTAATTGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATTAT
GCCAGTTAGATGAAAG
Found at i:4297254 original size:13 final size:13
Alignment explanation
Indices: 4297236--4297260 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4297226 TGGAAACGTT
4297236 TTTAAAAACCTTG
1 TTTAAAAACCTTG
4297249 TTTAAAAACCTT
1 TTTAAAAACCTT
4297261 TATAGAGTCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.16, G:0.04, T:0.40
Consensus pattern (13 bp):
TTTAAAAACCTTG
Found at i:4302164 original size:81 final size:81
Alignment explanation
Indices: 4302053--4302709 Score: 849
Period size: 81 Copynumber: 8.1 Consensus size: 81
4302043 AACTGTTTTA
* * * * **
4302053 AGTAAAAGATTAATTGCCTAACTGTGCATTTGACAGAAATGTGTCAATTATGACAACTAGATGAA
1 AGTAAAAGATTAATTGCCTAGCTTTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAA
4302118 AGGTTAAATACCTTTG
66 AGGTTAAATACCTTTG
* * * *
4302134 AGGAAAAGATTAATTGCCTAGCTTTACATTTGATAGAAAGGTGTCAATTATGCTAGTTAGATGAA
1 AGTAAAAGATTAATTGCCTAGCTTTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAA
4302199 AGGTTAAATACCTTTG
66 AGGTTAAATACCTTTG
* * *
4302215 AGTAAAAGATTAATTGCCTAGCTGTGCATTTGATAGAAATGTGTCAATTATGCCAGTTAGATGAA
1 AGTAAAAGATTAATTGCCTAGCTTTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAA
*
4302280 ATGTTAAATACCTTTG
66 AGGTTAAATACCTTTG
* * * *
4302296 AGTAAAAGAATAATTGCCTAG-TTGTGCATTTGAAAGAAAAGTGTCAATTATGCCAATTAGATGA
1 AGTAAAAGATTAATTGCCTAGCTT-TGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGA
* * *
4302360 GATGTTAAATACCTTTC
65 AAGGTTAAATACCTTTG
4302377 AGTAAAAGATTAATTGCCTAG-TTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGA
1 AGTAAAAGATTAATTGCCTAGCTT-TGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGA
**
4302441 AAGGTTAAAGGCCTTTG
65 AAGGTTAAATACCTTTG
* * *
4302458 AGTAAAAGATTAATTGCCTAG-TTGTGCATTTAACATAAATGTGTCAATTATGCCAGTTAGATGA
1 AGTAAAAGATTAATTGCCTAGCTT-TGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGA
* *
4302522 AAGGATAAATGCCTTTG
65 AAGGTTAAATACCTTTG
* *
4302539 AGTTAAAGATTTAA-TGCCTAGCTGTT-CATTTGACAGAAAGGTATCAATTATGCCAGTTAGATG
1 AGTAAAAGA-TTAATTGCCTAGCT-TTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATG
* * *
4302602 AAATGCTAAATGCCTTTG
64 AAAGGTTAAATACCTTTG
* * * * * *
4302620 AGTTAAAGATTTAA-TGCCTAGCTGTGCATTTGGCAAAAAGGTGTCAATCATGCAAGTTAGATGA
1 AGTAAAAGA-TTAATTGCCTAGCTTTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGA
*
4302684 AAGGTTAAATGCCTTTG
65 AAGGTTAAATACCTTTG
*
4302701 GGTAAAAGA
1 AGTAAAAGA
4302710 CTAAATTCTT
Statistics
Matches: 517, Mismatches: 54, Indels: 10
0.89 0.09 0.02
Matches are distributed among these distances:
80 2 0.00
81 508 0.98
82 6 0.01
83 1 0.00
ACGTcount: A:0.36, C:0.11, G:0.21, T:0.32
Consensus pattern (81 bp):
AGTAAAAGATTAATTGCCTAGCTTTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAA
AGGTTAAATACCTTTG
Found at i:4303897 original size:28 final size:28
Alignment explanation
Indices: 4303865--4303932 Score: 136
Period size: 28 Copynumber: 2.4 Consensus size: 28
4303855 TTGATGGAGA
4303865 ATTTGCTCACTCGTCTTATAAACAACAG
1 ATTTGCTCACTCGTCTTATAAACAACAG
4303893 ATTTGCTCACTCGTCTTATAAACAACAG
1 ATTTGCTCACTCGTCTTATAAACAACAG
4303921 ATTTGCTCACTC
1 ATTTGCTCACTC
4303933 ATACCATTGC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 40 1.00
ACGTcount: A:0.29, C:0.26, G:0.10, T:0.34
Consensus pattern (28 bp):
ATTTGCTCACTCGTCTTATAAACAACAG
Found at i:4305014 original size:20 final size:20
Alignment explanation
Indices: 4304989--4305037 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
4304979 CTTGTTGGAA
4304989 AAATGAAGATAAAAATCTTG
1 AAATGAAGATAAAAATCTTG
*
4305009 AAATGAAGATGAAAATCTTG
1 AAATGAAGATAAAAATCTTG
*
4305029 AAATCAAGA
1 AAATGAAGA
4305038 AGAAGAGGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.55, C:0.06, G:0.16, T:0.22
Consensus pattern (20 bp):
AAATGAAGATAAAAATCTTG
Found at i:4311669 original size:13 final size:13
Alignment explanation
Indices: 4311650--4311685 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
4311640 TTTTATGAAT
*
4311650 AGTGAACAGTACC
1 AGTGAACAGTAAC
*
4311663 CGTGAACAGTAAC
1 AGTGAACAGTAAC
4311676 AGTGAACAGT
1 AGTGAACAGT
4311686 GGGGGTATCG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.39, C:0.19, G:0.25, T:0.17
Consensus pattern (13 bp):
AGTGAACAGTAAC
Found at i:4312199 original size:44 final size:44
Alignment explanation
Indices: 4312129--4312279 Score: 214
Period size: 44 Copynumber: 3.4 Consensus size: 44
4312119 ATGCAATATT
* *
4312129 TTACCATTTAATATCATAAGCACGTAAGCTTATTTTACCAATATAC
1 TTACCATTT-AT-CCATAAGCTCGTAAGCTTATTTTACCAATATAC
*
4312175 TTACCATTTATCCATAAGCTCGTAAGCTTATTTTACCAATTTAC
1 TTACCATTTATCCATAAGCTCGTAAGCTTATTTTACCAATATAC
* *
4312219 TTACCATTTATCCAAAAGCTCGTAAGCTTATTTTACCAATACAC
1 TTACCATTTATCCATAAGCTCGTAAGCTTATTTTACCAATATAC
*
4312263 TTGCCA-TTATTCCATAA
1 TTACCATTTA-TCCATAA
4312280 CCATATACCA
Statistics
Matches: 96, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
43 3 0.03
44 82 0.85
45 2 0.02
46 9 0.09
ACGTcount: A:0.33, C:0.23, G:0.07, T:0.38
Consensus pattern (44 bp):
TTACCATTTATCCATAAGCTCGTAAGCTTATTTTACCAATATAC
Found at i:4312665 original size:21 final size:22
Alignment explanation
Indices: 4312626--4312666 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
4312616 CCGAAATAAC
4312626 ATTCATGATAAAAATCATATAT
1 ATTCATGATAAAAATCATATAT
*
4312648 ATTCATGAT-AACATCATAT
1 ATTCATGATAAAAATCATAT
4312667 GCAAAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.46, C:0.12, G:0.05, T:0.37
Consensus pattern (22 bp):
ATTCATGATAAAAATCATATAT
Found at i:4313827 original size:23 final size:23
Alignment explanation
Indices: 4313801--4313853 Score: 106
Period size: 23 Copynumber: 2.3 Consensus size: 23
4313791 TCTAATTCTC
4313801 AACAAGATTGCTTCAAAATTCAA
1 AACAAGATTGCTTCAAAATTCAA
4313824 AACAAGATTGCTTCAAAATTCAA
1 AACAAGATTGCTTCAAAATTCAA
4313847 AACAAGA
1 AACAAGA
4313854 ATACCTACCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.51, C:0.17, G:0.09, T:0.23
Consensus pattern (23 bp):
AACAAGATTGCTTCAAAATTCAA
Found at i:4315422 original size:87 final size:87
Alignment explanation
Indices: 4315276--4315435 Score: 198
Period size: 87 Copynumber: 1.8 Consensus size: 87
4315266 TCCCGCTAGA
* * ** *
4315276 AATAAAATTAATCTCACTTGATATTTTTTCCTTTAAAACAAACTTCGTCTCGCTTGAGAC-ATTT
1 AATAAAATTAATCTCACATGAGATTTTTTCC-TTAAAACAAACTTCGTCTAACTGGAGACAATTT
4315340 TCCCTAAATTTTGAAATATTTAG
65 TCCCTAAATTTTGAAATATTTAG
* * *
4315363 AATAAAATTGATCTCACATGAGATATTTTTCC-TAAGAACAAATTTTGTCTAACTGGAGACAATT
1 AATAAAATTAATCTCACATGAGAT-TTTTTCCTTAA-AACAAACTTCGTCTAACTGGAGACAATT
*
4315427 TTCCTTAAA
64 TTCCCTAAA
4315436 ACAAAATTTT
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
86 3 0.05
87 40 0.66
88 18 0.30
ACGTcount: A:0.36, C:0.16, G:0.09, T:0.39
Consensus pattern (87 bp):
AATAAAATTAATCTCACATGAGATTTTTTCCTTAAAACAAACTTCGTCTAACTGGAGACAATTTT
CCCTAAATTTTGAAATATTTAG
Found at i:4315486 original size:36 final size:36
Alignment explanation
Indices: 4315399--4315727 Score: 394
Period size: 36 Copynumber: 9.1 Consensus size: 36
4315389 TTTTCCTAAG
* ** * * *
4315399 AACAAATTTTGTCTAACTGGAGACAATTT-TCCTTAA
1 AACAAATTTAGTCTCCCTTGAGACAGTTTCT-CTTGA
*
4315435 AACAAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGA
1 AAC-AAATTTAGTCTCCCTTGAGACAGTTTCTCTTGA
* * *
4315472 AAAAAATTTCGTCTCCCTTGAGACAGATTCTCTTGA
1 AACAAATTTAGTCTCCCTTGAGACAGTTTCTCTTGA
* *
4315508 AACAAATGTAGTCTCCCTTGAGACATTTTCTCTTGA
1 AACAAATTTAGTCTCCCTTGAGACAGTTTCTCTTGA
*
4315544 AACAAATTTAGTCTCCCTTGAGATAGTTTCTCTTGA
1 AACAAATTTAGTCTCCCTTGAGACAGTTTCTCTTGA
* * * *
4315580 AACAAATTTCGTCTCCCTTGAGAGAATTTCCCTTGA
1 AACAAATTTAGTCTCCCTTGAGACAGTTTCTCTTGA
*
4315616 AACAAATTTAGTCTCCCTTGAGACAGATTCTCTTGA
1 AACAAATTTAGTCTCCCTTGAGACAGTTTCTCTTGA
*
4315652 AACAAATTTCGTCTCCCTTGAGACAGTTTCTCTTGA
1 AACAAATTTAGTCTCCCTTGAGACAGTTTCTCTTGA
* ** *
4315688 AACATATTTTA-TCTTGCTTGAGATAGTTTC-CGTTGA
1 AACA-AATTTAGTCTCCCTTGAGACAGTTTCTC-TTGA
4315724 AACA
1 AACA
4315728 GAAGATTTTA
Statistics
Matches: 257, Mismatches: 32, Indels: 8
0.87 0.11 0.03
Matches are distributed among these distances:
35 1 0.00
36 223 0.87
37 32 0.12
38 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.36
Consensus pattern (36 bp):
AACAAATTTAGTCTCCCTTGAGACAGTTTCTCTTGA
Found at i:4315527 original size:21 final size:20
Alignment explanation
Indices: 4315503--4315672 Score: 56
Period size: 21 Copynumber: 9.2 Consensus size: 20
4315493 GACAGATTCT
4315503 CTTGAAACAAATGTAGTCTCC
1 CTTGAAACAAAT-TAGTCTCC
* *
4315524 CTTGAGAC--ATT--T-TCT
1 CTTGAAACAAATTAGTCTCC
4315539 CTTGAAACAAATTTAGTCTCC
1 CTTGAAACAAA-TTAGTCTCC
* * *
4315560 CTTG----AGA-TAGTTTCT
1 CTTGAAACAAATTAGTCTCC
*
4315575 CTTGAAACAAATTTCGTCTCC
1 CTTGAAACAAA-TTAGTCTCC
* *
4315596 CTTGAGA-GAA-T--T-TCC
1 CTTGAAACAAATTAGTCTCC
4315611 CTTGAAACAAATTTAGTCTCC
1 CTTGAAACAAA-TTAGTCTCC
* *
4315632 CTTGAGACAGA-T--TCT--
1 CTTGAAACAAATTAGTCTCC
*
4315647 CTTGAAACAAATTTCGTCTCC
1 CTTGAAACAAA-TTAGTCTCC
4315668 CTTGA
1 CTTGA
4315673 GACAGTTTCT
Statistics
Matches: 106, Mismatches: 19, Indels: 48
0.61 0.11 0.28
Matches are distributed among these distances:
15 37 0.35
16 4 0.04
17 7 0.07
18 5 0.05
19 8 0.08
20 4 0.04
21 41 0.39
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (20 bp):
CTTGAAACAAATTAGTCTCC
Found at i:4316031 original size:98 final size:99
Alignment explanation
Indices: 4315780--4316035 Score: 379
Period size: 99 Copynumber: 2.6 Consensus size: 99
4315770 AGATTTTATA
* *
4315780 AGAAACTAAGCCTGATTTTCAGGGGTTTCTTGATGAAAATTTTCAATGTGTTTTAAAAAGGAAGC
1 AGAAACTAAGCCTGATTTTCAGGGGTTTCTTGATGAAAATTTTCAATGAGTTTTTAAAAGGAAGC
*
4315845 TAAGCCTAATTTTTAGGGGTTTCTTTGACAACTT
66 TAAGCCTAATTTTTAGGGGTTTCCTTGACAACTT
* * *
4315879 AGAAACTAAGCCTGATTTTCAGGGGTTTCTTGATGAAGATTTTCAATGAATTTTTAAAATGAAGC
1 AGAAACTAAGCCTGATTTTCAGGGGTTTCTTGATGAAAATTTTCAATGAGTTTTTAAAAGGAAGC
4315944 TAAGCCTAATTTTTAGGGG-TTCCTTGACAACTT
66 TAAGCCTAATTTTTAGGGGTTTCCTTGACAACTT
* * * ** * * *
4315977 AGAAATTAAGTCTGATTTTCAGGGGTTTCTTTATGATTATCTCCAAAGAGTTTTTAAAA
1 AGAAACTAAGCCTGATTTTCAGGGGTTTCTTGATGAAAATTTTCAATGAGTTTTTAAAA
4316036 ACATGAGATA
Statistics
Matches: 142, Mismatches: 15, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
98 63 0.44
99 79 0.56
ACGTcount: A:0.31, C:0.12, G:0.19, T:0.38
Consensus pattern (99 bp):
AGAAACTAAGCCTGATTTTCAGGGGTTTCTTGATGAAAATTTTCAATGAGTTTTTAAAAGGAAGC
TAAGCCTAATTTTTAGGGGTTTCCTTGACAACTT
Found at i:4316082 original size:39 final size:39
Alignment explanation
Indices: 4316039--4316460 Score: 446
Period size: 36 Copynumber: 11.3 Consensus size: 39
4316029 TTTAAAAACA
*
4316039 TGAGATAGTTTCCCTTGAAACAAAAGATTTTATCTCTCT
1 TGAGATAGTTTCCCTTGAAACAAAAGATTTTATCTCGCT
* *
4316078 TGAGATAATTTCCCTTG--A-AATAGATTTTATCTCGCT
1 TGAGATAGTTTCCCTTGAAACAAAAGATTTTATCTCGCT
** * * *
4316114 TGAGATAGTTTCCCTCAAAACAGAAGATTTCATCTCCCT
1 TGAGATAGTTTCCCTTGAAACAAAAGATTTTATCTCGCT
* * * * *
4316153 TGAGACAGTTTCCCTCGAAACAGAAGATTTCATCTCCCT
1 TGAGATAGTTTCCCTTGAAACAAAAGATTTTATCTCGCT
* ** * * *
4316192 TGAGACAGTTTCTTTTGAAAC-AAAG-TTTTGTCACCCT
1 TGAGATAGTTTCCCTTGAAACAAAAGATTTTATCTCGCT
* * ** *
4316229 TGAGACAGTTTCTCTTGAAAC--AA-ATTTCGTCTCCCT
1 TGAGATAGTTTCCCTTGAAACAAAAGATTTTATCTCGCT
* * * *
4316265 TGAGAGATTTTCTCTTGAAACAAAAGATTTGATCTCGCT
1 TGAGATAGTTTCCCTTGAAACAAAAGATTTTATCTCGCT
4316304 TGAGATAGTTTCCCTTGAAAC---AGATTTTATCTCGCT
1 TGAGATAGTTTCCCTTGAAACAAAAGATTTTATCTCGCT
4316340 TGAGATAGTTTCCCTTGAAAC--AA-ATTTTATCTCGCT
1 TGAGATAGTTTCCCTTGAAACAAAAGATTTTATCTCGCT
*
4316376 TGAGATAGTTTCCCTTG-AA-TAAA-ATTTTATCTCGCT
1 TGAGATAGTTTCCCTTGAAACAAAAGATTTTATCTCGCT
* *
4316412 TGAGATAGTTTCCCTTGAAACAGAAGATTTTTTCTCGCT
1 TGAGATAGTTTCCCTTGAAACAAAAGATTTTATCTCGCT
4316451 TGAGATAGTT
1 TGAGATAGTT
4316461 GGAAGATAGC
Statistics
Matches: 336, Mismatches: 34, Indels: 26
0.85 0.09 0.07
Matches are distributed among these distances:
35 2 0.01
36 158 0.47
37 33 0.10
38 8 0.02
39 135 0.40
ACGTcount: A:0.28, C:0.20, G:0.15, T:0.37
Consensus pattern (39 bp):
TGAGATAGTTTCCCTTGAAACAAAAGATTTTATCTCGCT
Found at i:4316128 original size:75 final size:75
Alignment explanation
Indices: 4316039--4316460 Score: 487
Period size: 75 Copynumber: 5.7 Consensus size: 75
4316029 TTTAAAAACA
* * *
4316039 TGAGATAGTTTCCCTTGAAACAAAAGATTTTATCTCTCTTGAGATAATTTCCCTTGAAATAGATT
1 TGAGATAGTTTCCCTTGAAACAAAAGATTTTATCTCGCTTGAGATAGTTTCCCTTGAAACAGATT
4316104 TTATCTCGCT
66 TTATCTCGCT
** * * * * *
4316114 TGAGATAGTTTCCCTCAAAACAGAAGATTTCATCTCCCTTGAGACAGTTTCCCTCGAAACAGAAG
1 TGAGATAGTTTCCCTTGAAACAAAAGATTTTATCTCGCTTGAGATAGTTTCCCTTGAAAC---AG
* *
4316179 ATTTCATCTCCCT
63 ATTTTATCTCGCT
* ** * * * * * *
4316192 TGAGACAGTTTCTTTTGAAAC-AAAG-TTTTGTCACCCTTGAGACAGTTTCTCTTGAAACAAATT
1 TGAGATAGTTTCCCTTGAAACAAAAGATTTTATCTCGCTTGAGATAGTTTCCCTTGAAACAGATT
** *
4316255 TCGTCTCCCT
66 TTATCTCGCT
* * * *
4316265 TGAGAGATTTTCTCTTGAAACAAAAGATTTGATCTCGCTTGAGATAGTTTCCCTTGAAACAGATT
1 TGAGATAGTTTCCCTTGAAACAAAAGATTTTATCTCGCTTGAGATAGTTTCCCTTGAAACAGATT
4316330 TTATCTCGCT
66 TTATCTCGCT
*
4316340 TGAGATAGTTTCCCTTGAAAC--AA-ATTTTATCTCGCTTGAGATAGTTTCCCTTGAATA-AAAT
1 TGAGATAGTTTCCCTTGAAACAAAAGATTTTATCTCGCTTGAGATAGTTTCCCTTGAA-ACAGAT
4316401 TTTATCTCGCT
65 TTTATCTCGCT
* *
4316412 TGAGATAGTTTCCCTTGAAACAGAAGATTTTTTCTCGCTTGAGATAGTT
1 TGAGATAGTTTCCCTTGAAACAAAAGATTTTATCTCGCTTGAGATAGTT
4316461 GGAAGATAGC
Statistics
Matches: 295, Mismatches: 43, Indels: 18
0.83 0.12 0.05
Matches are distributed among these distances:
72 66 0.22
73 34 0.12
74 6 0.02
75 129 0.44
76 28 0.09
77 3 0.01
78 29 0.10
ACGTcount: A:0.28, C:0.20, G:0.15, T:0.37
Consensus pattern (75 bp):
TGAGATAGTTTCCCTTGAAACAAAAGATTTTATCTCGCTTGAGATAGTTTCCCTTGAAACAGATT
TTATCTCGCT
Found at i:4316341 original size:21 final size:21
Alignment explanation
Indices: 4316317--4316378 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
4316307 GATAGTTTCC
4316317 CTTGAAACAGATTTTATCTCG
1 CTTGAAACAGATTTTATCTCG
* *
4316338 CTTGAGATAG---TT-TC-C-
1 CTTGAAACAGATTTTATCTCG
*
4316353 CTTGAAACAAATTTTATCTCG
1 CTTGAAACAGATTTTATCTCG
4316374 CTTGA
1 CTTGA
4316379 GATAGTTTCC
Statistics
Matches: 30, Mismatches: 5, Indels: 12
0.64 0.11 0.26
Matches are distributed among these distances:
15 7 0.23
16 1 0.03
17 2 0.07
18 4 0.13
19 2 0.07
20 1 0.03
21 13 0.43
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.39
Consensus pattern (21 bp):
CTTGAAACAGATTTTATCTCG
Found at i:4316601 original size:96 final size:98
Alignment explanation
Indices: 4316468--4316823 Score: 407
Period size: 98 Copynumber: 3.7 Consensus size: 98
4316458 GTTGGAAGAT
* * * *
4316468 AGCCTAAATTTTAGGGGTTCCTTGACAACATAGAAACTAAGCCTTATTTTCAGGGGTTTCTTGAT
1 AGCCTAATTTTTAGGGGTTCCTTGACAACTTAGAAACTAAGCCTGATTTTCAAGGGTTTCTTGAT
*
4316533 GAAGAATTTCAATGAATTTTTAAAAGTAAGCTA
66 GAAGAATTTCAATGAGTTTTTAAAAGTAAGCTA
* * * ** * *
4316566 A-ACTTATTTTTAGGGGTTCC-TGACAACTTATAAACTAAGTATGATTTTTAGGGGTTTCTTGAT
1 AGCCTAATTTTTAGGGGTTCCTTGACAACTTAGAAACTAAGCCTGATTTTCAAGGGTTTCTTGAT
* *
4316629 GAAGAATTTTAATGAGTTTTTAAAAGGAAGCTA
66 GAAGAATTTCAATGAGTTTTTAAAAGTAAGCTA
* * * * *
4316662 AGCCTAAATTTTATGAGTTCCTTGACAACTTAGAAACTAAACCTGATTTTCAAGGGTTACTTGAT
1 AGCCTAATTTTTAGGGGTTCCTTGACAACTTAGAAACTAAGCCTGATTTTCAAGGGTTTCTTGAT
* * *
4316727 --A-ATTTTCAATGAGTTTTTAAGAGTAAGCCA
66 GAAGAATTTCAATGAGTTTTTAAAAGTAAGCTA
* * * * *
4316757 AGCCTAATTTATAGGGGTTCCTTGATGAAAACTAATAAACTAAGCTTGATTTTCAAGGGTTTCTT
1 AGCCTAATTTTTAGGGGTTCC-T--TGACAACTTAGAAACTAAGCCTGATTTTCAAGGGTTTCTT
4316822 GA
63 GA
4316824 CGAGTAAGTC
Statistics
Matches: 214, Mismatches: 39, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
95 41 0.19
96 70 0.33
97 30 0.14
98 73 0.34
ACGTcount: A:0.33, C:0.12, G:0.18, T:0.37
Consensus pattern (98 bp):
AGCCTAATTTTTAGGGGTTCCTTGACAACTTAGAAACTAAGCCTGATTTTCAAGGGTTTCTTGAT
GAAGAATTTCAATGAGTTTTTAAAAGTAAGCTA
Found at i:4317087 original size:54 final size:54
Alignment explanation
Indices: 4317028--4317188 Score: 148
Period size: 54 Copynumber: 3.2 Consensus size: 54
4317018 ACTTGACTCA
*
4317028 TCCATCGCATATGGAGTTGGATCAACATCATCAATATTGTCATTCTTGCTCGAT
1 TCCATCACATATGGAGTTGGATCAACATCATCAATATTGTCATTCTTGCTCGAT
* * ** *
4317082 TCCATCACATACGGAGCTGGAAAAACA-C-T-AATA----C--T-TGGCTC-A-
1 TCCATCACATATGGAGTTGGATCAACATCATCAATATTGTCATTCTTGCTCGAT
** * *
4317124 TCCATCGTATATGGAGTTGGATCAGCATCATCAACATTGTCATTCTTGCTCGAT
1 TCCATCACATATGGAGTTGGATCAACATCATCAATATTGTCATTCTTGCTCGAT
4317178 TCCATCACATA
1 TCCATCACATA
4317189 CAAAGCTGGA
Statistics
Matches: 78, Mismatches: 17, Indels: 24
0.66 0.14 0.20
Matches are distributed among these distances:
42 20 0.26
43 2 0.03
44 6 0.08
45 4 0.05
47 1 0.01
49 1 0.01
51 5 0.06
52 6 0.08
53 2 0.03
54 31 0.40
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (54 bp):
TCCATCACATATGGAGTTGGATCAACATCATCAATATTGTCATTCTTGCTCGAT
Found at i:4317179 original size:96 final size:96
Alignment explanation
Indices: 4317015--4317283 Score: 423
Period size: 96 Copynumber: 2.8 Consensus size: 96
4317005 AATCAGCTTA
* *
4317015 AATACTTGACTCATCCATCGCATATGGAGTTGGATCAACATCATCAATATTGTCATTCTTGCTCG
1 AATACTTGGCTCATCCATCGCATATGGAGTTGGATCAACATCATCAACATTGTCATTCTTGCTCG
** *
4317080 ATTCCATCACATACGGAGCTGGAAAAACACT
66 ATTCCATCACATACAAAGCTGGAAAAACACC
* *
4317111 AATACTTGGCTCATCCATCGTATATGGAGTTGGATCAGCATCATCAACATTGTCATTCTTGCTCG
1 AATACTTGGCTCATCCATCGCATATGGAGTTGGATCAACATCATCAACATTGTCATTCTTGCTCG
*
4317176 ATTCCATCACATACAAAGCTGGAACAACACC
66 ATTCCATCACATACAAAGCTGGAAAAACACC
* * *
4317207 AATACTTGGCTCATCCATCGCATATGGAGTTGGATCAATATCCTCAACATTGTCATCCTTGCTCG
1 AATACTTGGCTCATCCATCGCATATGGAGTTGGATCAACATCATCAACATTGTCATTCTTGCTCG
*
4317272 ATT-TATCACATA
66 ATTCCATCACATA
4317284 TAGAGTTGAA
Statistics
Matches: 159, Mismatches: 14, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
95 8 0.05
96 151 0.95
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (96 bp):
AATACTTGGCTCATCCATCGCATATGGAGTTGGATCAACATCATCAACATTGTCATTCTTGCTCG
ATTCCATCACATACAAAGCTGGAAAAACACC
Found at i:4317826 original size:163 final size:165
Alignment explanation
Indices: 4317556--4317884 Score: 644
Period size: 163 Copynumber: 2.0 Consensus size: 165
4317546 CACAATAATG
4317556 ACCAAATAGGGGCAGCTATAAGCACCATTTTTTATTCAACATCCACCCATTGCCACCAATTCTCT
1 ACCAAATAGGGGCAGCTATAAGCACCATTTTTTATTCAACATCCACCCATTGCCACCAATTCTCT
4317621 TATCCCACCATACCTACCATGTCACTATCCCTTGTTTCCTGCCACT-AAGGGATAAGTGCATATC
66 TATCCCACCATACCTACCATGTCACTATCCCTTGTTTCCTGCCACTAAAGGGATAAGTGCATATC
4317685 TGATGCATTAAACACCCAAC-AGTTATTTTATTTT
131 TGATGCATTAAACACCCAACAAGTTATTTTATTTT
4317719 ACCAAATAGGGGCAGCTATAAGCACCATTTTTTATTCAACATCCACCCATTGCCACCAATTCTCT
1 ACCAAATAGGGGCAGCTATAAGCACCATTTTTTATTCAACATCCACCCATTGCCACCAATTCTCT
4317784 TATCCCACCATACCTACCATGTCACTATCCCTTGTTTCCTGCCACTAAAGGGATAAGTGCATATC
66 TATCCCACCATACCTACCATGTCACTATCCCTTGTTTCCTGCCACTAAAGGGATAAGTGCATATC
4317849 TGATGCATTAAACACCCAACAAGTTATTTTATTTT
131 TGATGCATTAAACACCCAACAAGTTATTTTATTTT
4317884 A
1 A
4317885 TGAAAAAACT
Statistics
Matches: 164, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
163 111 0.68
164 38 0.23
165 15 0.09
ACGTcount: A:0.29, C:0.29, G:0.11, T:0.31
Consensus pattern (165 bp):
ACCAAATAGGGGCAGCTATAAGCACCATTTTTTATTCAACATCCACCCATTGCCACCAATTCTCT
TATCCCACCATACCTACCATGTCACTATCCCTTGTTTCCTGCCACTAAAGGGATAAGTGCATATC
TGATGCATTAAACACCCAACAAGTTATTTTATTTT
Found at i:4321748 original size:18 final size:19
Alignment explanation
Indices: 4321709--4321752 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
4321699 ATGTGGATTC
4321709 CATTCCCATGAGAATCCCA
1 CATTCCCATGAGAATCCCA
4321728 CATTCCCAATG-GAAT-CCA
1 CATTCCC-ATGAGAATCCCA
4321746 CATTCCC
1 CATTCCC
4321753 CTAACCAAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
18 10 0.42
19 11 0.46
20 3 0.12
ACGTcount: A:0.30, C:0.39, G:0.09, T:0.23
Consensus pattern (19 bp):
CATTCCCATGAGAATCCCA
Found at i:4322428 original size:4 final size:4
Alignment explanation
Indices: 4322419--4322444 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
4322409 GCGCACAGAA
4322419 TTAT TTAT TTAT TTAT TTAT TTAT TT
1 TTAT TTAT TTAT TTAT TTAT TTAT TT
4322445 CATGTGTCTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTAT
Found at i:4323367 original size:2 final size:2
Alignment explanation
Indices: 4323362--4323398 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
4323352 TATATATATA
*
4323362 AG AG AG AG AG AG AG AG AA AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
4323399 TGTAGCTTGA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.54, C:0.00, G:0.46, T:0.00
Consensus pattern (2 bp):
AG
Found at i:4325789 original size:53 final size:53
Alignment explanation
Indices: 4325709--4325815 Score: 196
Period size: 53 Copynumber: 2.0 Consensus size: 53
4325699 AAATTTGTGG
* *
4325709 AGGAAAACTATCTAAAATTGAGATTAATATGGAATATATTACAACTAAGAGAT
1 AGGAAAACAAACTAAAATTGAGATTAATATGGAATATATTACAACTAAGAGAT
4325762 AGGAAAACAAACTAAAATTGAGATTAATATGGAATATATTACAACTAAGAGAT
1 AGGAAAACAAACTAAAATTGAGATTAATATGGAATATATTACAACTAAGAGAT
4325815 A
1 A
4325816 ATTTTAACTT
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.51, C:0.07, G:0.15, T:0.26
Consensus pattern (53 bp):
AGGAAAACAAACTAAAATTGAGATTAATATGGAATATATTACAACTAAGAGAT
Found at i:4327380 original size:16 final size:15
Alignment explanation
Indices: 4327361--4327411 Score: 52
Period size: 16 Copynumber: 3.4 Consensus size: 15
4327351 AAAATGAAAC
4327361 TAAACAATAAAAGGA
1 TAAACAATAAAAGGA
4327376 TTAAATC-ATAAAAGGA
1 -TAAA-CAATAAAAGGA
* *
4327392 TAAATAAT-AAAGCA
1 TAAACAATAAAAGGA
4327406 TAAACA
1 TAAACA
4327412 TGTAATACAC
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
14 10 0.33
15 6 0.20
16 13 0.43
17 1 0.03
ACGTcount: A:0.63, C:0.08, G:0.10, T:0.20
Consensus pattern (15 bp):
TAAACAATAAAAGGA
Found at i:4329133 original size:12 final size:12
Alignment explanation
Indices: 4329116--4329155 Score: 62
Period size: 12 Copynumber: 3.2 Consensus size: 12
4329106 ATATTTTATA
*
4329116 AATAATTATAAT
1 AATAATGATAAT
4329128 AATAATGATAAT
1 AATAATGATAAT
4329140 AATAATGATAAAT
1 AATAATGAT-AAT
4329153 AAT
1 AAT
4329156 TAGAACCCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
12 20 0.77
13 6 0.23
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (12 bp):
AATAATGATAAT
Found at i:4329771 original size:37 final size:36
Alignment explanation
Indices: 4329730--4329839 Score: 108
Period size: 37 Copynumber: 3.2 Consensus size: 36
4329720 AGAAATTGAC
4329730 TCAAACGAGACAATATTTTGTTT-AGAGAGAAACAATT
1 TCAAA-GAGACAATATTTTGTTTCA-AGAGAAACAATT
* *
4329767 TCAAAG-G----T-TTATGTTTCAAGAGAAACAATC
1 TCAAAGAGACAATATTTTGTTTCAAGAGAAACAATT
* *
4329797 TCAAGTGAGACAAAATTTTGTTTCAAGAGAAACAATT
1 TCAA-AGAGACAATATTTTGTTTCAAGAGAAACAATT
4329834 TCAAAG
1 TCAAAG
4329840 GTTTATGTTT
Statistics
Matches: 58, Mismatches: 7, Indels: 17
0.71 0.09 0.21
Matches are distributed among these distances:
30 22 0.38
31 3 0.05
32 1 0.02
35 1 0.02
36 2 0.03
37 29 0.50
ACGTcount: A:0.43, C:0.12, G:0.16, T:0.29
Consensus pattern (36 bp):
TCAAAGAGACAATATTTTGTTTCAAGAGAAACAATT
Found at i:4329819 original size:67 final size:67
Alignment explanation
Indices: 4329711--4330022 Score: 443
Period size: 67 Copynumber: 4.7 Consensus size: 67
4329701 AGGTTAAATT
* * ** *
4329711 TGTTTCAAGAGAAATTGACTCAAACGAGACAATATTTTGTTT-AGAGAGAAACAATTTCAAAGGT
1 TGTTTCAAGAGAAACTGTCTCAAGTGAGACAAAATTTTGTTTCA-AGAGAAACAATTTCAAAGGT
4329775 TTA
65 TTA
**
4329778 TGTTTCAAGAGAAACAATCTCAAGTGAGACAAAATTTTGTTTCAAGAGAAACAATTTCAAAGGTT
1 TGTTTCAAGAGAAACTGTCTCAAGTGAGACAAAATTTTGTTTCAAGAGAAACAATTTCAAAGGTT
4329843 TA
66 TA
* *
4329845 TGTTTCAAGAGAAATTGTCTCAAGTGAGACAAAATTTTGTTTCTAGAGAAACAATCTT-AAAGGT
1 TGTTTCAAGAGAAACTGTCTCAAGTGAGACAAAATTTTGTTTCAAGAGAAACAAT-TTCAAAGGT
4329909 TTA
65 TTA
** * *
4329912 TGTTTCAAGAGAAACTGTCTCAACCGATACAAAA-TTTGTTTCAAGAGAAACAATCTCAAAGGTT
1 TGTTTCAAGAGAAACTGTCTCAAGTGAGACAAAATTTTGTTTCAAGAGAAACAATTTCAAAGGTT
4329976 TA
66 TA
* *
4329978 TGTTTCAAAAGAAACTGTCTCAAGTGAGA-AAAAATTTGTTTCAAG
1 TGTTTCAAGAGAAACTGTCTCAAGTGAGACAAAATTTTGTTTCAAG
4330023 TGAGACAAAA
Statistics
Matches: 220, Mismatches: 21, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
65 5 0.02
66 64 0.29
67 148 0.67
68 3 0.01
ACGTcount: A:0.40, C:0.12, G:0.17, T:0.31
Consensus pattern (67 bp):
TGTTTCAAGAGAAACTGTCTCAAGTGAGACAAAATTTTGTTTCAAGAGAAACAATTTCAAAGGTT
TA
Found at i:4329982 original size:30 final size:30
Alignment explanation
Indices: 4329882--4329992 Score: 89
Period size: 30 Copynumber: 3.5 Consensus size: 30
4329872 GACAAAATTT
* *
4329882 TGTTTCTAGAGAAACAATCTTAAAGGTTTA
1 TGTTTCAAGAGAAACAATCTCAAAGGTTTA
** * *
4329912 TGTTTCAAGAGAAACTGTCTCAACCGATACAAAATT-
1 TGTTTCAAGAGAAACAATCTCAA-AGGT------TTA
4329948 TGTTTCAAGAGAAACAATCTCAAAGGTTTA
1 TGTTTCAAGAGAAACAATCTCAAAGGTTTA
*
4329978 TGTTTCAAAAGAAAC
1 TGTTTCAAGAGAAAC
4329993 TGTCTCAAGT
Statistics
Matches: 62, Mismatches: 11, Indels: 16
0.70 0.12 0.18
Matches are distributed among these distances:
29 2 0.03
30 33 0.53
31 2 0.03
35 2 0.03
36 21 0.34
37 2 0.03
ACGTcount: A:0.40, C:0.14, G:0.15, T:0.31
Consensus pattern (30 bp):
TGTTTCAAGAGAAACAATCTCAAAGGTTTA
Found at i:4330021 original size:21 final size:21
Alignment explanation
Indices: 4329997--4330043 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
4329987 AGAAACTGTC
4329997 TCAAGTGAGAAAAAATTTGTT
1 TCAAGTGAGAAAAAATTTGTT
*
4330018 TCAAGTGAGACAAAATTTGTT
1 TCAAGTGAGAAAAAATTTGTT
4330039 TCAAG
1 TCAAG
4330044 GGAAACAATC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.40, C:0.09, G:0.19, T:0.32
Consensus pattern (21 bp):
TCAAGTGAGAAAAAATTTGTT
Found at i:4330049 original size:153 final size:154
Alignment explanation
Indices: 4329859--4330171 Score: 497
Period size: 153 Copynumber: 2.0 Consensus size: 154
4329849 TCAAGAGAAA
* * * *
4329859 TTGTCTCAAGTGAGACAAAATTTTGTTTCTAGAGAAACAATCTTAAAGGTTTATGTTTCAAGAGA
1 TTGTTTCAAGTGAGACAAAATTTTGTTTCAAGAGAAACAATCTCAAAGGTTTATGTTTCAAAAGA
* *
4329924 AACTGTCTCAACCGATACAAAATTTGTTTCAAGAGAAACAATCTCAAAGGTTTATGT-TTCAAAA
66 AACTGTCTCAACCGAGACAAAATTTGTTTCAAGAGAAACAATATCAAAGGTTTATGTCTT--AAA
4329988 GAA-ACTGTCTCAAGTGAGAAAAAAT
129 GAAGACTGTCTCAAGTGAGAAAAAAT
*
4330013 TTGTTTCAAGTGAGACAAAA-TTTGTTTCAAGGGAAACAATCTCAAAGGTTTATGTTTCAAAAGA
1 TTGTTTCAAGTGAGACAAAATTTTGTTTCAAGAGAAACAATCTCAAAGGTTTATGTTTCAAAAGA
*
4330077 AACTGTCTCAACCGAGACAAAATTTGTTTCAAGAGAAACAATATCAAAGGTTTATGTCTTAAGGA
66 AACTGTCTCAACCGAGACAAAATTTGTTTCAAGAGAAACAATATCAAAGGTTTATGTCTTAAAGA
* *
4330142 AGACTGTCTCAAGTGAGACAAAGT
131 AGACTGTCTCAAGTGAGAAAAAAT
4330166 TTGTTT
1 TTGTTT
4330172 TGAGAAAAAC
Statistics
Matches: 147, Mismatches: 10, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
152 5 0.03
153 121 0.82
154 21 0.14
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.31
Consensus pattern (154 bp):
TTGTTTCAAGTGAGACAAAATTTTGTTTCAAGAGAAACAATCTCAAAGGTTTATGTTTCAAAAGA
AACTGTCTCAACCGAGACAAAATTTGTTTCAAGAGAAACAATATCAAAGGTTTATGTCTTAAAGA
AGACTGTCTCAAGTGAGAAAAAAT
Found at i:4330051 original size:21 final size:21
Alignment explanation
Indices: 4330008--4330051 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
4329998 CAAGTGAGAA
* *
4330008 AAAATTTGTTTCAAGTGAGAC
1 AAAATTTGTTTCAAGGGAAAC
4330029 AAAATTTGTTTCAAGGGAAAC
1 AAAATTTGTTTCAAGGGAAAC
4330050 AA
1 AA
4330052 TCTCAAAGGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.43, C:0.09, G:0.18, T:0.30
Consensus pattern (21 bp):
AAAATTTGTTTCAAGGGAAAC
Found at i:4330086 original size:87 final size:87
Alignment explanation
Indices: 4329940--4330109 Score: 304
Period size: 87 Copynumber: 2.0 Consensus size: 87
4329930 CTCAACCGAT
**
4329940 ACAAAATTTGTTTCAAGAGAAACAATCTCAAAGGTTTATGTTTCAAAAGAAACTGTCTCAAGTGA
1 ACAAAATTTGTTTCAAGAGAAACAATCTCAAAGGTTTATGTTTCAAAAGAAACTGTCTCAACCGA
4330005 GAAAAAATTTGTTTCAAGTGAG
66 GAAAAAATTTGTTTCAAGTGAG
*
4330027 ACAAAATTTGTTTCAAGGGAAACAATCTCAAAGGTTTATGTTTCAAAAGAAACTGTCTCAACCGA
1 ACAAAATTTGTTTCAAGAGAAACAATCTCAAAGGTTTATGTTTCAAAAGAAACTGTCTCAACCGA
*
4330092 GACAAAATTTGTTTCAAG
66 GAAAAAATTTGTTTCAAG
4330110 AGAAACAATA
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
87 79 1.00
ACGTcount: A:0.41, C:0.14, G:0.16, T:0.29
Consensus pattern (87 bp):
ACAAAATTTGTTTCAAGAGAAACAATCTCAAAGGTTTATGTTTCAAAAGAAACTGTCTCAACCGA
GAAAAAATTTGTTTCAAGTGAG
Found at i:4330130 original size:66 final size:66
Alignment explanation
Indices: 4330024--4330189 Score: 219
Period size: 66 Copynumber: 2.5 Consensus size: 66
4330014 TGTTTCAAGT
*
4330024 GAGACAAAATTTGTTTCAAGGGAAACAATCTCAAAGGTTTATGT-TTCAAAAGAA-ACTGTCTCA
1 GAGACAAAATTTGTTTCAAGAGAAACAATCTCAAAGGTTTATGTCTT--AAAGAAGACTGTCTCA
4330087 ACC
64 ACC
* * *
4330090 GAGACAAAATTTGTTTCAAGAGAAACAATATCAAAGGTTTATGTCTTAAGGAAGACTGTCTCAAG
1 GAGACAAAATTTGTTTCAAGAGAAACAATCTCAAAGGTTTATGTCTTAAAGAAGACTGTCTCAAC
*
4330155 T
66 C
* ** *
4330156 GAGACAAAGTTTGTTTTGAGAAAAACAATCTCAA
1 GAGACAAAATTTGTTTCAAGAGAAACAATCTCAA
4330190 GTGAAGTCAA
Statistics
Matches: 88, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
65 5 0.06
66 81 0.92
67 2 0.02
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Consensus pattern (66 bp):
GAGACAAAATTTGTTTCAAGAGAAACAATCTCAAAGGTTTATGTCTTAAAGAAGACTGTCTCAAC
C
Found at i:4334873 original size:85 final size:85
Alignment explanation
Indices: 4334774--4334943 Score: 340
Period size: 85 Copynumber: 2.0 Consensus size: 85
4334764 AAGGGGTGAT
4334774 AGGACGGGTAAGAGAGAAATTAGTGGGTGGGGAGGGTTTATGCGTGTATGGGGAAGGAAAAAACT
1 AGGACGGGTAAGAGAGAAATTAGTGGGTGGGGAGGGTTTATGCGTGTATGGGGAAGGAAAAAACT
4334839 GTCAAAGGAAATGATGATGG
66 GTCAAAGGAAATGATGATGG
4334859 AGGACGGGTAAGAGAGAAATTAGTGGGTGGGGAGGGTTTATGCGTGTATGGGGAAGGAAAAAACT
1 AGGACGGGTAAGAGAGAAATTAGTGGGTGGGGAGGGTTTATGCGTGTATGGGGAAGGAAAAAACT
4334924 GTCAAAGGAAATGATGATGG
66 GTCAAAGGAAATGATGATGG
4334944 CATAAAACTG
Statistics
Matches: 85, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
85 85 1.00
ACGTcount: A:0.34, C:0.05, G:0.41, T:0.20
Consensus pattern (85 bp):
AGGACGGGTAAGAGAGAAATTAGTGGGTGGGGAGGGTTTATGCGTGTATGGGGAAGGAAAAAACT
GTCAAAGGAAATGATGATGG
Found at i:4335358 original size:37 final size:37
Alignment explanation
Indices: 4335317--4335390 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
4335307 ATCCCATTGT
4335317 CTATTCTCTTTATGTTAACATCTCCATGGGGTAGACA
1 CTATTCTCTTTATGTTAACATCTCCATGGGGTAGACA
4335354 CTATTCTCTTTATGTTAACATCTCCATGGGGTAGACA
1 CTATTCTCTTTATGTTAACATCTCCATGGGGTAGACA
4335391 TAATTCACCT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.38
Consensus pattern (37 bp):
CTATTCTCTTTATGTTAACATCTCCATGGGGTAGACA
Found at i:4343774 original size:66 final size:66
Alignment explanation
Indices: 4343662--4344066 Score: 475
Period size: 66 Copynumber: 6.2 Consensus size: 66
4343652 ATGGAGATAA
**
4343662 TGTCTCAAGCGAGACAAAATTTGTTTCAAGAGAAACAATCTCAAAGGTTTATGTTTCAAGAGAGT
1 TGTCTCAAGCGAGACAAAATTTGTTTCAAGAGAAACAATCTCAAAGGTTTATGTTTCAAGAGAAA
4343727 C
66 C
* * * * * *
4343728 TTTCTCAAGCGAGACAAAATTTGTTTCCAGGGAAACAATATTAAAGGTTTATATTTCAAGAGAAA
1 TGTCTCAAGCGAGACAAAATTTGTTTCAAGAGAAACAATCTCAAAGGTTTATGTTTCAAGAGAAA
4343793 C
66 C
* * *
4343794 TGTCTCAAGCAAGACAAAATTTGTTTCAAGATAAACAATCTCAAAGGTTCATGTTTCAAGAGAAA
1 TGTCTCAAGCGAGACAAAATTTGTTTCAAGAGAAACAATCTCAAAGGTTTATGTTTCAAGAGAAA
4343859 C
66 C
** *
4343860 TACCTCAAGCGAGACAAAATTTGTTTAAAGAGAAACAATCTCAAAGG--TATGTTTCAAGAGAAA
1 TGTCTCAAGCGAGACAAAATTTGTTTCAAGAGAAACAATCTCAAAGGTTTATGTTTCAAGAGAAA
4343923 C
66 C
* * * * * *
4343924 TGTCTTAAGTGAGACAAACTATATTTCAA-AGAAAACAATCTCAAAGGTTTATGTTTCAAAAGAA
1 TGTCTCAAGCGAGACAAAATTTGTTTCAAGAG-AAACAATCTCAAAGGTTTATGTTTCAAGAGAA
*
4343988 AA
65 AC
* * * * *
4343990 TGTCTTAA---ACACAAAATTTGTTTCAATATAAGCAATCTCAAAGGTTTATGTCTT-AAG-GAA
1 TGTCTCAAGCGAGACAAAATTTGTTTCAAGAGAAACAATCTCAAAGGTTTATGT-TTCAAGAGAA
4344050 TAC
65 -AC
* *
4344053 TATCTCAAGTGAGA
1 TGTCTCAAGCGAGA
4344067 GCAAGTTTGT
Statistics
Matches: 286, Mismatches: 44, Indels: 18
0.82 0.13 0.05
Matches are distributed among these distances:
62 3 0.01
63 46 0.16
64 55 0.19
66 182 0.64
ACGTcount: A:0.40, C:0.15, G:0.16, T:0.29
Consensus pattern (66 bp):
TGTCTCAAGCGAGACAAAATTTGTTTCAAGAGAAACAATCTCAAAGGTTTATGTTTCAAGAGAAA
C
Found at i:4343836 original size:36 final size:36
Alignment explanation
Indices: 4343781--4343903 Score: 107
Period size: 36 Copynumber: 3.6 Consensus size: 36
4343771 AAGGTTTATA
**
4343781 TTTCAAGAGAAACTGTCTCAAGCAAGACAAAATTTG
1 TTTCAAGAGAAACAATCTCAAGCAAGACAAAATTTG
* * *
4343817 TTTCAAGATAAACAATCTCAA--AGGTTC---A--TG
1 TTTCAAGAGAAACAATCTCAAGCAAG-ACAAAATTTG
* * *
4343847 TTTCAAGAGAAACTACCTCAAGCGAGACAAAATTTG
1 TTTCAAGAGAAACAATCTCAAGCAAGACAAAATTTG
*
4343883 TTTAAAGAGAAACAATCTCAA
1 TTTCAAGAGAAACAATCTCAA
4343904 AGGTATGTTT
Statistics
Matches: 65, Mismatches: 14, Indels: 16
0.68 0.15 0.17
Matches are distributed among these distances:
30 20 0.31
31 1 0.02
32 2 0.03
34 3 0.05
35 1 0.02
36 38 0.58
ACGTcount: A:0.43, C:0.17, G:0.15, T:0.25
Consensus pattern (36 bp):
TTTCAAGAGAAACAATCTCAAGCAAGACAAAATTTG
Found at i:4344770 original size:19 final size:19
Alignment explanation
Indices: 4344746--4344785 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
4344736 TTTTCTTGAT
4344746 CAATAGTTAGGAATAGGAG
1 CAATAGTTAGGAATAGGAG
*
4344765 CAATAGTTAGGAATGGGAG
1 CAATAGTTAGGAATAGGAG
4344784 CA
1 CA
4344786 CGAGCAGTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.40, C:0.07, G:0.33, T:0.20
Consensus pattern (19 bp):
CAATAGTTAGGAATAGGAG
Found at i:4348099 original size:3 final size:3
Alignment explanation
Indices: 4348091--4348144 Score: 72
Period size: 3 Copynumber: 17.7 Consensus size: 3
4348081 ATATTTTATA
* *
4348091 AAT AAT AAT AAT AAC AAT AAT AAT AAT AGT AAT AAT AAT AAT AAAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT
*
4348137 AAT TAT AA
1 AAT AAT AA
4348145 CCCAAACAAA
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
3 41 0.93
4 3 0.07
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:4348250 original size:30 final size:30
Alignment explanation
Indices: 4348216--4348392 Score: 97
Period size: 30 Copynumber: 5.5 Consensus size: 30
4348206 AGACAAAATT
4348216 TGTTTCAAGAGAAACAATCTCAAAGGTTTA
1 TGTTTCAAGAGAAACAATCTCAAAGGTTTA
* ** *
4348246 TGTTTCAAGGGAAACTGTCTCAAACGAGACAAAATT-
1 TGTTTCAAGAGAAACAATCTCAAA-G-G-----TTTA
* * *
4348282 TGTTTCCAGGGAAACAAACTCAAAGGTTTA
1 TGTTTCAAGAGAAACAATCTCAAAGGTTTA
** **
4348312 TGTTTCAAGAGAAACTGTCTCAAGCAAGAAAAAATT-
1 TGTTTCAAGAGAAACAATCTC-A--AAG----GTTTA
* *
4348348 TGTTTTAAGAGAAACAATCTCAAATGTTTA
1 TGTTTCAAGAGAAACAATCTCAAAGGTTTA
4348378 TGTTTCAAGAGAAAC
1 TGTTTCAAGAGAAAC
4348393 TGTCTCAAGT
Statistics
Matches: 108, Mismatches: 23, Indels: 32
0.66 0.14 0.20
Matches are distributed among these distances:
29 4 0.04
30 51 0.47
31 2 0.02
32 1 0.01
33 5 0.05
34 1 0.01
35 2 0.02
36 38 0.35
37 4 0.04
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Consensus pattern (30 bp):
TGTTTCAAGAGAAACAATCTCAAAGGTTTA
Found at i:4348279 original size:66 final size:66
Alignment explanation
Indices: 4348195--4348567 Score: 466
Period size: 66 Copynumber: 5.7 Consensus size: 66
4348185 ATGGAGAGAA
* *
4348195 TGTCTCAAGAGAGACAAAATTTGTTTCAAGAGAAACAATCTCAAAGGTTTATGTTTCAAGGGAAA
1 TGTCTCAAGCGAGACAAAATTTGTTTCAAGAGAAACAATCTCAAAGGTTTATGTTTCAAGAGAAA
4348260 C
66 C
* * * *
4348261 TGTCTCAAACGAGACAAAATTTGTTTCCAGGGAAACAAACTCAAAGGTTTATGTTTCAAGAGAAA
1 TGTCTCAAGCGAGACAAAATTTGTTTCAAGAGAAACAATCTCAAAGGTTTATGTTTCAAGAGAAA
4348326 C
66 C
* * * *
4348327 TGTCTCAAGCAAGAAAAAATTTGTTTTAAGAGAAACAATCTCAAATGTTTATGTTTCAAGAGAAA
1 TGTCTCAAGCGAGACAAAATTTGTTTCAAGAGAAACAATCTCAAAGGTTTATGTTTCAAGAGAAA
4348392 C
66 C
* * * * * *
4348393 TGTCTCAAGTGAGACAAAATTTGTTTCAAGGGAAACAATC-AAAAGGTTTCTATTTCAAGATAAA
1 TGTCTCAAGCGAGACAAAATTTGTTTCAAGAGAAACAATCTCAAAGGTTTATGTTTCAAGAGAAA
*
4348457 T
66 C
* * *
4348458 TGTCTTAAGCAAGATAAAATTTGTTTCAAGAGAAACAATCTCAAAGGTTTATGTCTT-AAGA-AA
1 TGTCTCAAGCGAGACAAAATTTGTTTCAAGAGAAACAATCTCAAAGGTTTATGT-TTCAAGAGAA
4348521 GAC
65 -AC
* * * **
4348524 TGTCTCAAGTGAGACCAAGTTTGTTTTGAGA-AATACAATCTCAA
1 TGTCTCAAGCGAGACAAAATTTGTTTCAAGAGAA-ACAATCTCAA
4348568 GTGAAGTCAA
Statistics
Matches: 261, Mismatches: 42, Indels: 8
0.84 0.14 0.03
Matches are distributed among these distances:
65 58 0.22
66 201 0.77
67 2 0.01
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (66 bp):
TGTCTCAAGCGAGACAAAATTTGTTTCAAGAGAAACAATCTCAAAGGTTTATGTTTCAAGAGAAA
C
Found at i:4348508 original size:131 final size:132
Alignment explanation
Indices: 4348195--4348549 Score: 504
Period size: 131 Copynumber: 2.7 Consensus size: 132
4348185 ATGGAGAGAA
* *
4348195 TGTCTCAAG-AGAGACAAAATTTGTTTCAAGAGAAACAATCTCAAAGGTTTATGTTTCAAGGGAA
1 TGTCTCAAGCA-AGAAAAAATTTGTTTCAAGAGAAACAATCTCAAAGGTTTATGTTTCAAGAGAA
** * *
4348259 ACTGTCTCAAACGAGACAAAATTTGTTTCCAGGGAAACAAACTCAAAGGTTTATGTTTCAAGAGA
65 ACTGTCTCAAGTGAGACAAAATTTGTTTCAAGGGAAACAAACTCAAAGGTTTATATTTCAAGAGA
4348324 AAC
130 AAC
* *
4348327 TGTCTCAAGCAAGAAAAAATTTGTTTTAAGAGAAACAATCTCAAATGTTTATGTTTCAAGAGAAA
1 TGTCTCAAGCAAGAAAAAATTTGTTTCAAGAGAAACAATCTCAAAGGTTTATGTTTCAAGAGAAA
* *
4348392 CTGTCTCAAGTGAGACAAAATTTGTTTCAAGGGAAAC-AA-TCAAAAGGTTTCTATTTCAAGATA
66 CTGTCTCAAGTGAGACAAAATTTGTTTCAAGGGAAACAAACTC-AAAGGTTTATATTTCAAGAGA
*
4348455 AAT
130 AAC
* *
4348458 TGTCTTAAGCAAGATAAAATTTGTTTCAAGAGAAACAATCTCAAAGGTTTATGTCTT-AAGA-AA
1 TGTCTCAAGCAAGAAAAAATTTGTTTCAAGAGAAACAATCTCAAAGGTTTATGT-TTCAAGAGAA
* *
4348521 GACTGTCTCAAGTGAGACCAAGTTTGTTT
65 -ACTGTCTCAAGTGAGACAAAATTTGTTT
4348550 TGAGAAATAC
Statistics
Matches: 202, Mismatches: 17, Indels: 9
0.89 0.07 0.04
Matches are distributed among these distances:
130 4 0.02
131 102 0.50
132 95 0.47
133 1 0.00
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.30
Consensus pattern (132 bp):
TGTCTCAAGCAAGAAAAAATTTGTTTCAAGAGAAACAATCTCAAAGGTTTATGTTTCAAGAGAAA
CTGTCTCAAGTGAGACAAAATTTGTTTCAAGGGAAACAAACTCAAAGGTTTATATTTCAAGAGAA
AC
Found at i:4349279 original size:28 final size:28
Alignment explanation
Indices: 4349245--4349303 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
4349235 GCAGTTTTCA
4349245 TTCTCGTCCCGATTCGGTTGTCTTCATT
1 TTCTCGTCCCGATTCGGTTGTCTTCATT
4349273 TTCTCGTCCCGATTCGGTTGTCTTCATT
1 TTCTCGTCCCGATTCGGTTGTCTTCATT
4349301 TTC
1 TTC
4349304 CACTAGGGTG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.07, C:0.29, G:0.17, T:0.47
Consensus pattern (28 bp):
TTCTCGTCCCGATTCGGTTGTCTTCATT
Found at i:4355694 original size:2 final size:2
Alignment explanation
Indices: 4355651--4355675 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
4355641 CCAAAAGTTA
4355651 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
4355676 ACTCATATCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:4355760 original size:21 final size:21
Alignment explanation
Indices: 4355713--4355761 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
4355703 AGTTGCATAG
4355713 CTAAAAAATTATTACATCTCT
1 CTAAAAAATTATTACATCTCT
* * *
4355734 CAAAAAAATTCTTCCATACT-T
1 CTAAAAAATTATTACAT-CTCT
4355755 CTAAAAA
1 CTAAAAA
4355762 TTAAGACATA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 21 0.91
22 2 0.09
ACGTcount: A:0.47, C:0.20, G:0.00, T:0.33
Consensus pattern (21 bp):
CTAAAAAATTATTACATCTCT
Found at i:4357998 original size:82 final size:83
Alignment explanation
Indices: 4357890--4358176 Score: 263
Period size: 83 Copynumber: 3.5 Consensus size: 83
4357880 CTTTAGCGGT
* ** * *
4357890 GTTTTTCCAACAAACGGCGCAATAGAGTGGTAATTTAGCGGCATTTAT-AGCTAAAACGCCGGAA
1 GTTTTTCCAACAAACGGCGCAATAGAGTAGTAATTTAGCGGCATTTATCA-AAAAAACACCGCAA
4357954 TAGATTTGTTTACAGTGGC
65 TAGATTTGTTTACAGTGGC
* * *
4357973 GTTTTTTCAATAAAC-GCGCAATAGAGTAGTAATTTAGCGGCGTTTATCAAAAAAACACCGCAAT
1 GTTTTTCCAACAAACGGCGCAATAGAGTAGTAATTTAGCGGCATTTATCAAAAAAACACCGCAAT
* *
4358037 AGGTTTGTTTATAGTGGC
66 AGATTTGTTTACAGTGGC
* * * ** * * * * * *
4358055 GTTTGTGCAAAAAACACCGTAATAGATTAATAATTTAGCGGCGTTTATCAAACAAACGCCGCAAT
1 GTTTTTCCAACAAACGGCGCAATAGAGTAGTAATTTAGCGGCATTTATCAAAAAAACACCGCAAT
* * *
4358120 AGGTTTGTTTATAGCGGC
66 AGATTTGTTTACAGTGGC
** * * * * * *
4358138 GTTCCTGCAAAAAACGCCGTAATAGATTAATAATTTAGC
1 GTTTTTCCAACAAACGGCGCAATAGAGTAGTAATTTAGC
4358177 TATGTTTGTT
Statistics
Matches: 179, Mismatches: 23, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
82 69 0.39
83 110 0.61
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.30
Consensus pattern (83 bp):
GTTTTTCCAACAAACGGCGCAATAGAGTAGTAATTTAGCGGCATTTATCAAAAAAACACCGCAAT
AGATTTGTTTACAGTGGC
Found at i:4358015 original size:41 final size:40
Alignment explanation
Indices: 4357881--4358026 Score: 98
Period size: 42 Copynumber: 3.5 Consensus size: 40
4357871 CAAATTATAC
* *
4357881 TTTAGCGGTGTTTTTCCAACAAACGGCGCAATAGAGTGGTAA
1 TTTAGCGGCGTTTTTCCAA-AAAC-GCGCAATAGAGTAGTAA
* ** * * * *
4357923 TTTAGCGGCATTTATAGCTAAAACGCCGGAATAGATTTGT--
1 TTTAGCGGCGTTT-TTCCAAAAACG-CGCAATAGAGTAGTAA
* * *
4357963 TTACAGTGGCGTTTTTTCAATAAACGCGCAATAGAGTAGTAA
1 TT-TAGCGGCGTTTTTCCAA-AAACGCGCAATAGAGTAGTAA
* *
4358005 TTTAGCGGCGTTTATCAAAAAA
1 TTTAGCGGCGTTTTTCCAAAAA
4358027 ACACCGCAAT
Statistics
Matches: 76, Mismatches: 22, Indels: 14
0.68 0.20 0.12
Matches are distributed among these distances:
40 19 0.25
41 26 0.34
42 28 0.37
43 3 0.04
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.31
Consensus pattern (40 bp):
TTTAGCGGCGTTTTTCCAAAAACGCGCAATAGAGTAGTAA
Found at i:4358037 original size:42 final size:42
Alignment explanation
Indices: 4357989--4358121 Score: 139
Period size: 42 Copynumber: 3.2 Consensus size: 42
4357979 TCAATAAACG
4357989 CGCAATAGAGTAGTAATTTAGCGGCGTTTATCAAAAAAACAC
1 CGCAATAGAGTAGTAATTTAGCGGCGTTTATCAAAAAAACAC
* * *
4358031 CGCAATAG-GTTTGT--TTATAGTGGCGTTTGTGC-AAAAAACAC
1 CGCAATAGAG-TAGTAATT-TAGCGGCGTTTAT-CAAAAAAACAC
* * * * *
4358072 CGTAATAGATTAATAATTTAGCGGCGTTTATCAAACAAACGC
1 CGCAATAGAGTAGTAATTTAGCGGCGTTTATCAAAAAAACAC
4358114 CGCAATAG
1 CGCAATAG
4358122 GTTTGTTTAT
Statistics
Matches: 72, Mismatches: 12, Indels: 14
0.73 0.12 0.14
Matches are distributed among these distances:
40 2 0.03
41 31 0.43
42 37 0.51
43 2 0.03
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.27
Consensus pattern (42 bp):
CGCAATAGAGTAGTAATTTAGCGGCGTTTATCAAAAAAACAC
Found at i:4358106 original size:83 final size:82
Alignment explanation
Indices: 4357920--4358176 Score: 318
Period size: 83 Copynumber: 3.1 Consensus size: 82
4357910 AATAGAGTGG
* ** * * * * * *
4357920 TAATTTAGCGGCATTTAT-AGCTAAAACGCCGGAATAGATTTGTTTACAGTGGCGTTTTTTCAAT
1 TAATTTAGCGGCGTTTATCA-AAAAAACGCCGCAATAGGTTTGTTTATAGTGGCGTTTCTGCAAA
* * * *
4357984 AAACGCGCAATAGAGTAG
65 AAACCCGTAATAGATTAA
* *
4358002 TAATTTAGCGGCGTTTATCAAAAAAACACCGCAATAGGTTTGTTTATAGTGGCGTTTGTGCAAAA
1 TAATTTAGCGGCGTTTATCAAAAAAACGCCGCAATAGGTTTGTTTATAGTGGCGTTTCTGCAAAA
4358067 AACACCGTAATAGATTAA
66 AAC-CCGTAATAGATTAA
* * *
4358085 TAATTTAGCGGCGTTTATCAAACAAACGCCGCAATAGGTTTGTTTATAGCGGCGTTCCTGCAAAA
1 TAATTTAGCGGCGTTTATCAAAAAAACGCCGCAATAGGTTTGTTTATAGTGGCGTTTCTGCAAAA
4358150 AACGCCGTAATAGATTAA
66 AAC-CCGTAATAGATTAA
4358168 TAATTTAGC
1 TAATTTAGC
4358177 TATGTTTGTT
Statistics
Matches: 153, Mismatches: 20, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
82 56 0.37
83 97 0.63
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.30
Consensus pattern (82 bp):
TAATTTAGCGGCGTTTATCAAAAAAACGCCGCAATAGGTTTGTTTATAGTGGCGTTTCTGCAAAA
AACCCGTAATAGATTAA
Found at i:4358153 original size:41 final size:41
Alignment explanation
Indices: 4358007--4358162 Score: 156
Period size: 41 Copynumber: 3.8 Consensus size: 41
4357997 AGTAGTAATT
4358007 TAGCGGCGTTTAT-CAAAAAAACACCGCAATAGGTTTGTTTA
1 TAGCGGCGTTTATGC-AAAAAACACCGCAATAGGTTTGTTTA
* * * * **
4358048 TAGTGGCGTTTGTGCAAAAAACACCGTAATAGATTAATAATT-
1 TAGCGGCGTTTATGCAAAAAACACCGCAATAGGTT--TGTTTA
*
4358090 TAGCGGCGTTTAT-CAAACAAACGCCGCAATAGGTTTGTTTA
1 TAGCGGCGTTTATGCAAA-AAACACCGCAATAGGTTTGTTTA
** * *
4358131 TAGCGGCGTTCCTGCAAAAAACGCCGTAATAG
1 TAGCGGCGTTTATGCAAAAAACACCGCAATAG
4358163 ATTAATAATT
Statistics
Matches: 93, Mismatches: 16, Indels: 12
0.77 0.13 0.10
Matches are distributed among these distances:
40 3 0.03
41 57 0.61
42 30 0.32
43 3 0.03
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (41 bp):
TAGCGGCGTTTATGCAAAAAACACCGCAATAGGTTTGTTTA
Found at i:4358642 original size:21 final size:22
Alignment explanation
Indices: 4358616--4358668 Score: 63
Period size: 21 Copynumber: 2.4 Consensus size: 22
4358606 GTGTTTTTCT
*
4358616 GCTTTCGAATA-CAAAATAATA
1 GCTTTCAAATATCAAAATAATA
* *
4358637 GCTTTCAAATATGATAATAATA
1 GCTTTCAAATATCAAAATAATA
4358659 GCTTTTCAAA
1 GC-TTTCAAA
4358669 ACGTGATGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
21 10 0.37
22 10 0.37
23 7 0.26
ACGTcount: A:0.43, C:0.13, G:0.09, T:0.34
Consensus pattern (22 bp):
GCTTTCAAATATCAAAATAATA
Found at i:4360207 original size:20 final size:20
Alignment explanation
Indices: 4360176--4360214 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
4360166 ACAAACGCCG
4360176 CAAATTGATA-TTAAATCCC
1 CAAATTGATATTTAAATCCC
4360195 CAAATTAGATATTTAAATCC
1 CAAATT-GATATTTAAATCC
4360215 TGAGCCCTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 6 0.33
20 4 0.22
21 8 0.44
ACGTcount: A:0.44, C:0.18, G:0.05, T:0.33
Consensus pattern (20 bp):
CAAATTGATATTTAAATCCC
Found at i:4361183 original size:56 final size:57
Alignment explanation
Indices: 4361097--4361211 Score: 223
Period size: 56 Copynumber: 2.0 Consensus size: 57
4361087 ATTTAATTTG
4361097 TTAAACCAAATATCAATAATTTGTACACATAATAAATGAAGCACATAGGAC-TGAGA
1 TTAAACCAAATATCAATAATTTGTACACATAATAAATGAAGCACATAGGACTTGAGA
4361153 TTAAACCAAATATCAATAATTTGTACACATAATAAATGAAGCACATAGGACTTGAGA
1 TTAAACCAAATATCAATAATTTGTACACATAATAAATGAAGCACATAGGACTTGAGA
4361210 TT
1 TT
4361212 GCTATCTTTA
Statistics
Matches: 58, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
56 51 0.88
57 7 0.12
ACGTcount: A:0.47, C:0.14, G:0.12, T:0.27
Consensus pattern (57 bp):
TTAAACCAAATATCAATAATTTGTACACATAATAAATGAAGCACATAGGACTTGAGA
Found at i:4362763 original size:27 final size:26
Alignment explanation
Indices: 4362713--4362789 Score: 104
Period size: 24 Copynumber: 3.0 Consensus size: 26
4362703 CATAGGATGC
*
4362713 ATGAAGTGTTATTTTTAAGAGACAAATA
1 ATGAAGTGTT-GTTTTAAGAGACAAA-A
4362741 ATGAAGTGTTGTTTTAAGAGAC--AA
1 ATGAAGTGTTGTTTTAAGAGACAAAA
*
4362765 ATGAAGTATTGTTTTAAGAGACAAA
1 ATGAAGTGTTGTTTTAAGAGACAAA
4362790 CTTATTATGA
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
24 22 0.49
25 1 0.02
26 1 0.02
27 11 0.24
28 10 0.22
ACGTcount: A:0.42, C:0.04, G:0.21, T:0.34
Consensus pattern (26 bp):
ATGAAGTGTTGTTTTAAGAGACAAAA
Found at i:4369002 original size:44 final size:43
Alignment explanation
Indices: 4368929--4369157 Score: 280
Period size: 44 Copynumber: 5.3 Consensus size: 43
4368919 TTTTTTAAAC
*
4368929 AAACGCCGCTATATATCA-ACCTTTAGCGGCGTTTGTATACTA
1 AAACGCCGCTATATACCAGACCTTTAGCGGCGTTTGTATACTA
* *
4368971 TAAACGCCGCTATCTACCAGACCTTTAGCGGCGTTTGTATCCTA
1 -AAACGCCGCTATATACCAGACCTTTAGCGGCGTTTGTATACTA
* * *
4369015 AACACGACGCTATATACCAGATCTTTAGCGGCGTTTGTATATTGA
1 AA-ACGCCGCTATATACCAGACCTTTAGCGGCGTTTGTATACT-A
* * * * *
4369060 AAATGCCACTATATACCAGACCTTTAGTGGTGTTTGTATCCTAA
1 AAACGCCGCTATATACCAGACCTTTAGCGGCGTTTGTATACT-A
* * * *
4369104 AAACGCCGCTATATACCAGACCTCTAGCGGCTTTTGTATCCAA
1 AAACGCCGCTATATACCAGACCTTTAGCGGCGTTTGTATACTA
4369147 AAACGCCGCTA
1 AAACGCCGCTA
4369158 ATTCTCAAAG
Statistics
Matches: 159, Mismatches: 24, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
43 30 0.19
44 126 0.79
45 3 0.02
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.29
Consensus pattern (43 bp):
AAACGCCGCTATATACCAGACCTTTAGCGGCGTTTGTATACTA
Found at i:4369582 original size:104 final size:103
Alignment explanation
Indices: 4369392--4369874 Score: 443
Period size: 104 Copynumber: 4.6 Consensus size: 103
4369382 TACTGTTGTG
* * * * * * *
4369392 TTTTTTCAAATACATAAAGAACTTGTTTACATACTCGACAAAATGTTTATTATTTTATTAATGAC
1 TTTTATCAAATA-AAAAAGAATTTGTTTATATACTCGACAAAATGTTCATTATTTTATCAACGAC
* * * * * *
4369457 -AGAAAGAACATATTTACATACTCGACAAAATGTTCGTTA
65 AAAAAAAAAC-TGTTTATATACTCGATAAAATATTCGTTA
* ** * * *
4369496 TTTTATCAAATAGAGAAAGAACATGTTTATATACTCAACAAAATGTTCATTGTTCTATCAACGAC
1 TTTTATCAAATA-AAAAAGAATTTGTTTATATACTCGACAAAATGTTCATTATTTTATCAACGAC
4369561 AAAAAAAAACTGTTTATATACTCGATAAAATATTCGTTA
65 AAAAAAAAACTGTTTATATACTCGATAAAATATTCGTTA
* * * * * *
4369600 TTTTATCAATGTAAAAATGAATTTGTTTATATACTTGTCAAAATATTCATTATTTTATCAACCAC
1 TTTTATCAA-ATAAAAAAGAATTTGTTTATATACTCGACAAAATGTTCATTATTTTATCAACGAC
*** * * * * **
4369665 AACATAATTTA-T-TTTTTATATTTGATAAGATGGTCGTT-
65 AA-A-AAAAAACTGTTTATATACTCGATAAAATATTCGTTA
* * * * *
4369703 TTTTCATTAATTTAACAAAATAATTTGTTTACATACTCGACAAAATGTTCATTGTTTTATCAACG
1 TTTT-ATCAA-ATAA-AAAAGAATTTGTTTATATACTCGACAAAATGTTCATTATTTTATCAACG
*
4369768 ACAAAAAGAAACTGTTTATATACTCGATAAAATATTCGTTA
63 ACAAAAAAAAACTGTTTATATACTCGATAAAATATTCGTTA
* * * * *
4369809 TTTTATCAACGTAAAAATGAATTTGTTTATATACTTGTCAAAATATTCATTATTTTATCAACGAC
1 TTTTATCAA-ATAAAAAAGAATTTGTTTATATACTCGACAAAATGTTCATTATTTTATCAACGAC
4369874 A
65 A
4369875 GCATAATTTA
Statistics
Matches: 303, Mismatches: 67, Indels: 18
0.78 0.17 0.05
Matches are distributed among these distances:
103 7 0.02
104 206 0.68
105 83 0.27
106 7 0.02
ACGTcount: A:0.39, C:0.12, G:0.09, T:0.40
Consensus pattern (103 bp):
TTTTATCAAATAAAAAAGAATTTGTTTATATACTCGACAAAATGTTCATTATTTTATCAACGACA
AAAAAAAACTGTTTATATACTCGATAAAATATTCGTTA
Found at i:4369766 original size:209 final size:208
Alignment explanation
Indices: 4369519--4369964 Score: 795
Period size: 209 Copynumber: 2.1 Consensus size: 208
4369509 AGAAAGAACA
* *
4369519 TGTTTATATACTCAACAAAATGTTCATTGTTCTATCAACGACAAAAAAAAACTGTTTATATACTC
1 TGTTTACATACTCGACAAAATGTTCATTGTTCTATCAACGACAAAAAAAAACTGTTTATATACTC
*
4369584 GATAAAATATTCGTTATTTTATCAATGTAAAAATGAATTTGTTTATATACTTGTCAAAATATTCA
66 GATAAAATATTCGTTATTTTATCAACGTAAAAATGAATTTGTTTATATACTTGTCAAAATATTCA
4369649 TTATTTTATCAACCACAACATAATTTATTTTTTATATTTGATAAGATGGTCGTTTTTTCATTAAT
131 TTATTTTATCAACCACAACATAATTTA-TTTTTATATTTGATAAGATGGTCGTTTTTTCATTAAT
*
4369714 TTAACAAAATAATT
195 TTAACAAAAGAATT
* *
4369728 TGTTTACATACTCGACAAAATGTTCATTGTTTTATCAACGACAAAAAGAAACTGTTTATATACTC
1 TGTTTACATACTCGACAAAATGTTCATTGTTCTATCAACGACAAAAAAAAACTGTTTATATACTC
4369793 GATAAAATATTCGTTATTTTATCAACGTAAAAATGAATTTGTTTATATACTTGTCAAAATATTCA
66 GATAAAATATTCGTTATTTTATCAACGTAAAAATGAATTTGTTTATATACTTGTCAAAATATTCA
* *
4369858 TTATTTTATCAACGACAGCATAATTTATTTTTATATTTGATAAGATGGTCGTTTTTTCATTAATT
131 TTATTTTATCAACCACAACATAATTTATTTTTATATTTGATAAGATGGTCGTTTTTTCATTAATT
4369923 TAACAAAAGAATT
196 TAACAAAAGAATT
*
4369936 TGTTTACATACTCGACAAAATATT-ATTGT
1 TGTTTACATACTCGACAAAATGTTCATTGT
4369965 ATACATAATG
Statistics
Matches: 228, Mismatches: 9, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
207 5 0.02
208 73 0.32
209 150 0.66
ACGTcount: A:0.37, C:0.12, G:0.09, T:0.42
Consensus pattern (208 bp):
TGTTTACATACTCGACAAAATGTTCATTGTTCTATCAACGACAAAAAAAAACTGTTTATATACTC
GATAAAATATTCGTTATTTTATCAACGTAAAAATGAATTTGTTTATATACTTGTCAAAATATTCA
TTATTTTATCAACCACAACATAATTTATTTTTATATTTGATAAGATGGTCGTTTTTTCATTAATT
TAACAAAAGAATT
Found at i:4369870 original size:52 final size:53
Alignment explanation
Indices: 4369414--4369871 Score: 296
Period size: 52 Copynumber: 8.8 Consensus size: 53
4369404 CATAAAGAAC
* * * * * * *
4369414 TTGTTTACATACTCGACAAAATGTTTATTATTTTATTAATG-ACAGAAA-GAAC
1 TTGTTTATATACTCGATAAAATATTCATTATTTTATCAACGTACA-AAATGAAT
* * * * * * * * *
4369466 ATATTTACATACTCGACAAAATGTTCGTTATTTTATCAA-ATAGAGAAA-GAAC
1 TTGTTTATATACTCGATAAAATATTCATTATTTTATCAACGTACA-AAATGAAT
* * * * * * ** *
4369518 ATGTTTATATACTCAACAAAATGTTCATTGTTCTATCAACG-ACAAAAAAAAA
1 TTGTTTATATACTCGATAAAATATTCATTATTTTATCAACGTACAAAATGAAT
* * *
4369570 CTGTTTATATACTCGATAAAATATTCGTTATTTTATCAATGTA-AAAATGAAT
1 TTGTTTATATACTCGATAAAATATTCATTATTTTATCAACGTACAAAATGAAT
* * *
4369622 TTGTTTATATACTTG-TCAAAATATTCATTATTTTATCAAC-CACAACAT-AAT
1 TTGTTTATATACTCGAT-AAAATATTCATTATTTTATCAACGTACAAAATGAAT
* * * * * ** * * **
4369673 TTATTTTTTATATTTGATAAGATGGTCGTT-TTTTCATTAATTTAACAAAAT-AAT
1 TT-GTTTATATACTCGATAAAATATTCATTATTTT-ATCAACGT-ACAAAATGAAT
* * * * * *
4369727 TTGTTTACATACTCGACAAAATGTTCATTGTTTTATCAACG-ACAAAAAGAAA
1 TTGTTTATATACTCGATAAAATATTCATTATTTTATCAACGTACAAAATGAAT
* *
4369779 CTGTTTATATACTCGATAAAATATTCGTTATTTTATCAACGTA-AAAATGAAT
1 TTGTTTATATACTCGATAAAATATTCATTATTTTATCAACGTACAAAATGAAT
*
4369831 TTGTTTATATACTTG-TCAAAATATTCATTATTTTATCAACG
1 TTGTTTATATACTCGAT-AAAATATTCATTATTTTATCAACG
4369872 ACAGCATAAT
Statistics
Matches: 321, Mismatches: 70, Indels: 30
0.76 0.17 0.07
Matches are distributed among these distances:
51 21 0.07
52 260 0.81
53 25 0.08
54 15 0.05
ACGTcount: A:0.39, C:0.12, G:0.09, T:0.40
Consensus pattern (53 bp):
TTGTTTATATACTCGATAAAATATTCATTATTTTATCAACGTACAAAATGAAT
Found at i:4370736 original size:19 final size:19
Alignment explanation
Indices: 4370712--4370774 Score: 117
Period size: 19 Copynumber: 3.3 Consensus size: 19
4370702 ATATTGGTAC
4370712 CGATACTCAAAGGAAATAT
1 CGATACTCAAAGGAAATAT
4370731 CGATACTCAAAGGAAATAT
1 CGATACTCAAAGGAAATAT
*
4370750 CGATACTCAAGGGAAATAT
1 CGATACTCAAAGGAAATAT
4370769 CGATAC
1 CGATAC
4370775 CCGTCAAGTG
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
19 43 1.00
ACGTcount: A:0.44, C:0.17, G:0.17, T:0.21
Consensus pattern (19 bp):
CGATACTCAAAGGAAATAT
Found at i:4372223 original size:19 final size:19
Alignment explanation
Indices: 4372183--4372222 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
4372173 ATACGAATAC
4372183 AAATGTTACATCACTTTAA
1 AAATGTTACATCACTTTAA
4372202 AAATGTATAC-TCA-TTTAA
1 AAATGT-TACATCACTTTAA
4372220 AAA
1 AAA
4372223 AAAACTTTAC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 8 0.40
19 9 0.45
20 3 0.15
ACGTcount: A:0.47, C:0.12, G:0.05, T:0.35
Consensus pattern (19 bp):
AAATGTTACATCACTTTAA
Found at i:4372828 original size:79 final size:79
Alignment explanation
Indices: 4372697--4372938 Score: 358
Period size: 79 Copynumber: 3.1 Consensus size: 79
4372687 TTATAGCATA
* * * ** ** * *
4372697 CTTTTATGTTGATAATGCACCAATATGCATTTAAAATTTGACATCCTTTCATGCCAGTAATGCAC
1 CTTTTATGCTGATAATGCACCCATATGCATTTCAGCTAAGGCATCCTTTCATGCCAATAATGCAC
*
4372762 CCATATGCACTATT
66 CCATATGCATTATT
* *
4372776 CTTTTATGCCGATAATGCACCCATATGCATTTCAGCTAAGGCATCATTTCATGCCAATAATGCAC
1 CTTTTATGCTGATAATGCACCCATATGCATTTCAGCTAAGGCATCCTTTCATGCCAATAATGCAC
4372841 CCATATGCATTATT
66 CCATATGCATTATT
*
4372855 TTTTTATGCTGATAATGCACCCATATGCATTTCAGCTAAGGCATCCTTTCATGCCAATAATGCAC
1 CTTTTATGCTGATAATGCACCCATATGCATTTCAGCTAAGGCATCCTTTCATGCCAATAATGCAC
4372920 CCATATGCATTATT
66 CCATATGCATTATT
*
4372934 TTTTT
1 CTTTT
4372939 GATCATTCGT
Statistics
Matches: 148, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
79 148 1.00
ACGTcount: A:0.29, C:0.23, G:0.12, T:0.36
Consensus pattern (79 bp):
CTTTTATGCTGATAATGCACCCATATGCATTTCAGCTAAGGCATCCTTTCATGCCAATAATGCAC
CCATATGCATTATT
Found at i:4372836 original size:45 final size:45
Alignment explanation
Indices: 4372781--4372930 Score: 169
Period size: 45 Copynumber: 3.6 Consensus size: 45
4372771 CTATTCTTTT
*
4372781 ATGCCGATAATGCACCCATATGCATTTCAGCTAAGGCATCATTTC
1 ATGCCAATAATGCACCCATATGCATTTCAGCTAAGGCATCATTTC
* *
4372826 ATGCCAATAATGCACCCATATGCA-TT-A--T------T-TTTTT
1 ATGCCAATAATGCACCCATATGCATTTCAGCTAAGGCATCATTTC
** *
4372860 ATGCTGATAATGCACCCATATGCATTTCAGCTAAGGCATCCTTTC
1 ATGCCAATAATGCACCCATATGCATTTCAGCTAAGGCATCATTTC
4372905 ATGCCAATAATGCACCCATATGCATT
1 ATGCCAATAATGCACCCATATGCATT
4372931 ATTTTTTTGA
Statistics
Matches: 85, Mismatches: 9, Indels: 22
0.73 0.08 0.19
Matches are distributed among these distances:
34 25 0.29
35 3 0.04
36 1 0.01
38 1 0.01
41 1 0.01
43 1 0.01
44 3 0.04
45 50 0.59
ACGTcount: A:0.29, C:0.25, G:0.13, T:0.32
Consensus pattern (45 bp):
ATGCCAATAATGCACCCATATGCATTTCAGCTAAGGCATCATTTC
Found at i:4373493 original size:20 final size:21
Alignment explanation
Indices: 4373444--4373495 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 21
4373434 GTTTTAAAAT
*
4373444 GGTATCGATAC-CTTCTCTTC
1 GGTATCGATACTCTTCCCTTC
**
4373464 GGTAAAGATACTC-TCCCTTC
1 GGTATCGATACTCTTCCCTTC
4373484 GGTATCGATACT
1 GGTATCGATACT
4373496 GATTGAATCA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
20 25 0.96
21 1 0.04
ACGTcount: A:0.21, C:0.27, G:0.17, T:0.35
Consensus pattern (21 bp):
GGTATCGATACTCTTCCCTTC
Found at i:4378553 original size:45 final size:45
Alignment explanation
Indices: 4378493--4378647 Score: 147
Period size: 45 Copynumber: 3.7 Consensus size: 45
4378483 ATGCACTATT
* * *
4378493 CTTTTATGCCGATAATGAACCCATATGCATTTCAGCTAAGGCATC
1 CTTTCATGCCAATAATGCACCCATATGCATTTCAGCTAAGGCATC
4378538 CTTTCATGCCAATAATGCACCCATATGCA-TT-A--T------T-
1 CTTTCATGCCAATAATGCACCCATATGCATTTCAGCTAAGGCATC
* *
4378572 TTTTTATGCTC-ATAATGCACCCATATG-ATTTTCAGCTAAGGCATC
1 CTTTCATGC-CAATAATGCACCCATATGCA-TTTCAGCTAAGGCATC
*
4378617 ATTTCATGCCAATAATGCACCCATATGCATT
1 CTTTCATGCCAATAATGCACCCATATGCATT
4378648 GTTTTTTTGA
Statistics
Matches: 88, Mismatches: 7, Indels: 30
0.70 0.06 0.24
Matches are distributed among these distances:
33 1 0.01
34 23 0.26
35 4 0.05
36 1 0.01
38 1 0.01
41 1 0.01
43 1 0.01
44 4 0.05
45 51 0.58
46 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.12, T:0.34
Consensus pattern (45 bp):
CTTTCATGCCAATAATGCACCCATATGCATTTCAGCTAAGGCATC
Found at i:4378646 original size:79 final size:79
Alignment explanation
Indices: 4378415--4378655 Score: 315
Period size: 79 Copynumber: 3.1 Consensus size: 79
4378405 TATAGCATAC
* * * * ** * * * *
4378415 TTTTATGTTGATAATGCACCCATATGCATTTAAACTTTGGCATCTTTTCTTGTCAATAATGCACT
1 TTTTATGCTCATAATGCACCCATATGCATTTCAGCTAAGGCATCATTTCATGCCAATAATGCACC
* *
4378480 CATATGCACTATTC
66 CATATGCATTATTT
* *
4378494 TTTTATGC-CGATAATGAACCCATATGCATTTCAGCTAAGGCATCCTTTCATGCCAATAATGCAC
1 TTTTATGCTC-ATAATGCACCCATATGCATTTCAGCTAAGGCATCATTTCATGCCAATAATGCAC
4378558 CCATATGCATTATTT
65 CCATATGCATTATTT
4378573 TTTTATGCTCATAATGCACCCATATG-ATTTTCAGCTAAGGCATCATTTCATGCCAATAATGCAC
1 TTTTATGCTCATAATGCACCCATATGCA-TTTCAGCTAAGGCATCATTTCATGCCAATAATGCAC
*
4378637 CCATATGCATTGTTT
65 CCATATGCATTATTT
4378652 TTTT
1 TTTT
4378656 GATCATTTGT
Statistics
Matches: 143, Mismatches: 16, Indels: 6
0.87 0.10 0.04
Matches are distributed among these distances:
78 1 0.01
79 141 0.99
80 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.12, T:0.39
Consensus pattern (79 bp):
TTTTATGCTCATAATGCACCCATATGCATTTCAGCTAAGGCATCATTTCATGCCAATAATGCACC
CATATGCATTATTT
Found at i:4379111 original size:20 final size:21
Alignment explanation
Indices: 4379086--4379134 Score: 66
Period size: 20 Copynumber: 2.4 Consensus size: 21
4379076 TTTAAAATGG
*
4379086 TATCGATACCT-TATCTTCGA
1 TATCGATACCTCTACCTTCGA
*
4379106 TATCGATA-CTCTCCCTTCGA
1 TATCGATACCTCTACCTTCGA
4379126 TATCGATAC
1 TATCGATAC
4379135 TGATTGAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 2 0.08
20 23 0.92
ACGTcount: A:0.24, C:0.29, G:0.10, T:0.37
Consensus pattern (21 bp):
TATCGATACCTCTACCTTCGA
Found at i:4383415 original size:60 final size:59
Alignment explanation
Indices: 4383346--4383461 Score: 162
Period size: 60 Copynumber: 1.9 Consensus size: 59
4383336 TTTAAAATGA
* * *
4383346 TCTCCGACTAT-AGAATATTACTTTATTGAGTCACTCAACTATTAAAAGTTACAAAATAG
1 TCTCCGACTATAAG-ACATTACTTTATTGAGTCACCCAAATATTAAAAGTTACAAAATAG
* *
4383405 TCTCTCGACTATAAGACATTACTTTGTTGAGTCACCCAAATATTGAAAGTTACAAAA
1 TCTC-CGACTATAAGACATTACTTTATTGAGTCACCCAAATATTAAAAGTTACAAAA
4383462 AAAATGGTCA
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
59 4 0.08
60 44 0.88
61 2 0.04
ACGTcount: A:0.38, C:0.18, G:0.11, T:0.33
Consensus pattern (59 bp):
TCTCCGACTATAAGACATTACTTTATTGAGTCACCCAAATATTAAAAGTTACAAAATAG
Found at i:4384227 original size:24 final size:24
Alignment explanation
Indices: 4384175--4384224 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
4384165 CAAATACCTA
** *
4384175 AATTTTACATGTGTTTTTTTACAT
1 AATTTTACATGTGTTTTTGGAAAT
4384199 AATTTTACATGTGATTTTTGGAAAT
1 AATTTTACATGTG-TTTTTGGAAAT
4384224 A
1 A
4384225 TTTACAAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
24 13 0.59
25 9 0.41
ACGTcount: A:0.30, C:0.06, G:0.12, T:0.52
Consensus pattern (24 bp):
AATTTTACATGTGTTTTTGGAAAT
Found at i:4384884 original size:21 final size:19
Alignment explanation
Indices: 4384860--4384902 Score: 50
Period size: 21 Copynumber: 2.2 Consensus size: 19
4384850 GATTATTTTT
4384860 TATTAAATGATATAGCATACA
1 TATTAAATGATATAG--TACA
* *
4384881 TATTATATTATATAGTACA
1 TATTAAATGATATAGTACA
4384900 TAT
1 TAT
4384903 GACATTACGC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 7 0.35
21 13 0.65
ACGTcount: A:0.44, C:0.07, G:0.07, T:0.42
Consensus pattern (19 bp):
TATTAAATGATATAGTACA
Found at i:4384933 original size:5 final size:5
Alignment explanation
Indices: 4384923--4384989 Score: 55
Period size: 5 Copynumber: 12.8 Consensus size: 5
4384913 TATATAGTAT
* * * *
4384923 TTATA TTATA TTATA TAATA TATATA TTATT TTATT TTATT TTATTA TTACTA
1 TTATA TTATA TTATA TTATA T-TATA TTATA TTATA TTATA TTA-TA TTA-TA
4384976 -TATA TTACTA TTAT
1 TTATA TTA-TA TTAT
4384990 TTTTATTTTA
Statistics
Matches: 53, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
4 2 0.04
5 36 0.68
6 15 0.28
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (5 bp):
TTATA
Found at i:4384937 original size:21 final size:21
Alignment explanation
Indices: 4384913--4384957 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
4384903 GACATTACGC
* *
4384913 TATATAGTATTTATATTATAT
1 TATATAATATATATATTATAT
*
4384934 TATATAATATATATATTATTT
1 TATATAATATATATATTATAT
4384955 TAT
1 TAT
4384958 TTTATTTTAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (21 bp):
TATATAATATATATATTATAT
Found at i:4392893 original size:22 final size:22
Alignment explanation
Indices: 4392868--4392937 Score: 63
Period size: 22 Copynumber: 3.2 Consensus size: 22
4392858 CATGACAAAC
*
4392868 ATTTCATTTCCTTGTGAATTTA
1 ATTTCATTTCCTTTTGAATTTA
* *
4392890 ATTTTC-TTTCATTTTGTACTTT-
1 A-TTTCATTTCCTTTTG-AATTTA
* *
4392912 GTTTCATCTCCTTTTGAATTTA
1 ATTTCATTTCCTTTTGAATTTA
4392934 ATTT
1 ATTT
4392938 TCTTTCATTC
Statistics
Matches: 36, Mismatches: 8, Indels: 8
0.69 0.15 0.15
Matches are distributed among these distances:
21 8 0.22
22 20 0.56
23 8 0.22
ACGTcount: A:0.19, C:0.14, G:0.07, T:0.60
Consensus pattern (22 bp):
ATTTCATTTCCTTTTGAATTTA
Found at i:4397830 original size:246 final size:246
Alignment explanation
Indices: 4397396--4397892 Score: 985
Period size: 246 Copynumber: 2.0 Consensus size: 246
4397386 TTCATCATCT
*
4397396 ATCAAAATATTCAACTCTTAATAATTCCTTATAACATTAGAACCAACTTTTCCAATTTACCCAAA
1 ATCAAAATATTCAACTCTTAATAATTCCTTATAACATTAGAACCAACTTTTCCAATTCACCCAAA
4397461 ATGGTCTTCACCATTTTACCACTTAAATTCTTAATACCAATAATTCCAACATTGAAATTATTTCC
66 ATGGTCTTCACCATTTTACCACTTAAATTCTTAATACCAATAATTCCAACATTGAAATTATTTCC
4397526 ATTCAAATGCTTTTACAAAAGCATAAATACATTTAAGTACCCCAACTATGCAATTGTTGTACTTA
131 ATTCAAATGCTTTTACAAAAGCATAAATACATTTAAGTACCCCAACTATGCAATTGTTGTACTTA
4397591 AATCACCAATCATTTCAATCTTCCCAAAATAATCAATTTCCAGCATAGTAC
196 AATCACCAATCATTTCAATCTTCCCAAAATAATCAATTTCCAGCATAGTAC
4397642 ATCAAAATATTCAACTCTTAATAATTCCTTATAACATTAGAACCAACTTTTCCAATTCACCCAAA
1 ATCAAAATATTCAACTCTTAATAATTCCTTATAACATTAGAACCAACTTTTCCAATTCACCCAAA
4397707 ATGGTCTTCACCATTTTACCACTTAAATTCTTAATACCAATAATTCCAACATTGAAATTATTTCC
66 ATGGTCTTCACCATTTTACCACTTAAATTCTTAATACCAATAATTCCAACATTGAAATTATTTCC
4397772 ATTCAAATGCTTTTACAAAAGCATAAATACATTTAAGTACCCCAACTATGCAATTGTTGTACTTA
131 ATTCAAATGCTTTTACAAAAGCATAAATACATTTAAGTACCCCAACTATGCAATTGTTGTACTTA
4397837 AATCACCAATCATTTCAATCTTCCCAAAATAATCAATTTCCAGCATAGTAC
196 AATCACCAATCATTTCAATCTTCCCAAAATAATCAATTTCCAGCATAGTAC
4397888 ATCAA
1 ATCAA
4397893 TTATACAACA
Statistics
Matches: 250, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
246 250 1.00
ACGTcount: A:0.38, C:0.23, G:0.05, T:0.34
Consensus pattern (246 bp):
ATCAAAATATTCAACTCTTAATAATTCCTTATAACATTAGAACCAACTTTTCCAATTCACCCAAA
ATGGTCTTCACCATTTTACCACTTAAATTCTTAATACCAATAATTCCAACATTGAAATTATTTCC
ATTCAAATGCTTTTACAAAAGCATAAATACATTTAAGTACCCCAACTATGCAATTGTTGTACTTA
AATCACCAATCATTTCAATCTTCCCAAAATAATCAATTTCCAGCATAGTAC
Found at i:4400014 original size:8 final size:8
Alignment explanation
Indices: 4400001--4400031 Score: 53
Period size: 8 Copynumber: 3.8 Consensus size: 8
4399991 AAGATGAAGC
4400001 AAAAAAGA
1 AAAAAAGA
4400009 AAAAAAGAA
1 AAAAAAG-A
4400018 AAAAAAGA
1 AAAAAAGA
4400026 AAAAAA
1 AAAAAA
4400032 AAATTTAAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 14 0.64
9 8 0.36
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (8 bp):
AAAAAAGA
Found at i:4400033 original size:10 final size:9
Alignment explanation
Indices: 4400001--4400032 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
4399991 AAGATGAAGC
4400001 AAAAAAG-A
1 AAAAAAGAA
4400009 AAAAAAGAA
1 AAAAAAGAA
4400018 AAAAAAGAA
1 AAAAAAGAA
4400027 AAAAAA
1 AAAAAA
4400033 AATTTAAGGT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 7 0.30
9 16 0.70
ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00
Consensus pattern (9 bp):
AAAAAAGAA
Found at i:4401665 original size:21 final size:20
Alignment explanation
Indices: 4401616--4401665 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
4401606 TTCGTCTTTA
*
4401616 TTTATATAAACATATTTATG
1 TTTATATAAACATATTAATG
* *
4401636 TATAGTATAAACGTATTAAATG
1 TTTA-TATAAACATATT-AATG
4401658 TTTATATA
1 TTTATATA
4401666 TTTATATTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
20 3 0.12
21 15 0.62
22 6 0.25
ACGTcount: A:0.42, C:0.04, G:0.08, T:0.46
Consensus pattern (20 bp):
TTTATATAAACATATTAATG
Found at i:4401739 original size:21 final size:19
Alignment explanation
Indices: 4401705--4401747 Score: 50
Period size: 21 Copynumber: 2.2 Consensus size: 19
4401695 GATTATTTTT
*
4401705 TATTATATGGTATAGCATACA
1 TATTATATGATATAG--TACA
*
4401726 TATTATATTATATAGTACA
1 TATTATATGATATAGTACA
4401745 TAT
1 TAT
4401748 GACATTACGC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 7 0.35
21 13 0.65
ACGTcount: A:0.40, C:0.07, G:0.09, T:0.44
Consensus pattern (19 bp):
TATTATATGATATAGTACA
Found at i:4401793 original size:22 final size:24
Alignment explanation
Indices: 4401768--4401823 Score: 64
Period size: 22 Copynumber: 2.4 Consensus size: 24
4401758 TATATAGTAT
*
4401768 TTATATTTATATAATACA-TA-TA
1 TTATATTTATACAATACATTACTA
4401790 TTATA-TTATTACAATACATTACTA
1 TTATATTTA-TACAATACATTACTA
*
4401814 TTATTTTTAT
1 TTATATTTAT
4401824 TTTAAAATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
21 3 0.11
22 13 0.46
23 2 0.07
24 7 0.25
25 3 0.11
ACGTcount: A:0.39, C:0.07, G:0.00, T:0.54
Consensus pattern (24 bp):
TTATATTTATACAATACATTACTA
Found at i:4411846 original size:16 final size:17
Alignment explanation
Indices: 4411814--4411846 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
4411804 ATTTTCAATG
4411814 AGTTTTAAAAGAGTCAA
1 AGTTTTAAAAGAGTCAA
*
4411831 AGTTTTGAAA-AGTCAA
1 AGTTTTAAAAGAGTCAA
4411847 TGTGACACCT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.45, C:0.06, G:0.18, T:0.30
Consensus pattern (17 bp):
AGTTTTAAAAGAGTCAA
Found at i:4415749 original size:34 final size:34
Alignment explanation
Indices: 4415706--4415792 Score: 90
Period size: 34 Copynumber: 2.6 Consensus size: 34
4415696 ACTCCAACTA
*
4415706 AATACCTTTTAATATTCAAAT-TTAAAAAGATAAT
1 AATATCTTTTAATATTCAAATATTAAAAAGAT-AT
* *
4415740 AATATCTTTTAAT-TTGAAATATTCAAAAGATAT
1 AATATCTTTTAATATTCAAATATTAAAAAGATAT
*
4415773 AA-ACTCATTTTACTATTCAA
1 AATA-TC-TTTTAATATTCAA
4415793 GCTTAAATAG
Statistics
Matches: 44, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
32 1 0.02
33 12 0.27
34 27 0.61
35 4 0.09
ACGTcount: A:0.46, C:0.10, G:0.03, T:0.40
Consensus pattern (34 bp):
AATATCTTTTAATATTCAAATATTAAAAAGATAT
Found at i:4416047 original size:31 final size:31
Alignment explanation
Indices: 4416012--4416073 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
4416002 TTTTTTCCAG
4416012 CAAAGTTTATGTTATGATAATATATTTGCAA
1 CAAAGTTTATGTTATGATAATATATTTGCAA
4416043 CAAAGTTTATGTTATGATAATATATTTGCAA
1 CAAAGTTTATGTTATGATAATATATTTGCAA
4416074 TATGTTGTGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.39, C:0.06, G:0.13, T:0.42
Consensus pattern (31 bp):
CAAAGTTTATGTTATGATAATATATTTGCAA
Found at i:4423953 original size:7 final size:7
Alignment explanation
Indices: 4423941--4423965 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
4423931 AAAAACTTTA
4423941 GAGTTTT
1 GAGTTTT
4423948 GAGTTTT
1 GAGTTTT
4423955 GAGTTTT
1 GAGTTTT
4423962 GAGT
1 GAGT
4423966 GAAATTAGAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.00, G:0.32, T:0.52
Consensus pattern (7 bp):
GAGTTTT
Found at i:4425362 original size:7 final size:7
Alignment explanation
Indices: 4425338--4425388 Score: 57
Period size: 7 Copynumber: 7.0 Consensus size: 7
4425328 ACAAATAATA
*
4425338 TATAGAT
1 TATATAT
4425345 TATAATGAT
1 TAT-AT-AT
4425354 TATATAT
1 TATATAT
4425361 TATATAT
1 TATATAT
*
4425368 TATAGAT
1 TATATAT
*
4425375 TATAGAT
1 TATATAT
4425382 TATATAT
1 TATATAT
4425389 CTGATTTCTT
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
7 31 0.79
8 3 0.08
9 5 0.13
ACGTcount: A:0.43, C:0.00, G:0.08, T:0.49
Consensus pattern (7 bp):
TATATAT
Found at i:4426364 original size:259 final size:257
Alignment explanation
Indices: 4425573--4426598 Score: 1357
Period size: 259 Copynumber: 4.0 Consensus size: 257
4425563 TAGTAAATCA
*
4425573 TTCGGGCCATCAATAAGTCTTTCGAGCATGATGATT-AAGCCTTTCGGGTCATTTGTCAGTCTTT
1 TTCGGGCCATCAATAAGTCTTTCGAGCATGATGATTAAATCC-TTCGGGTCATTTGTCAGTCTTT
* * * **
4425637 CGAGCAATATGATAAGTCATTT-GGGCCATAC-GTAATACCTTCGGTTAGGATGTTTTCACATGA
65 CGAGCAAGATGATAAGTC-TTTCGGGCCAT-CTATAAGACCTTCGGGCAGGATGTTTTCACATGA
* * *
4425700 TTT-AAAAAAATGAGAAAGTGATTTTCAAAGTTTCTCATTTAATATTTTTAGAAAATGGAATTTT
128 TTTAAAAAAAAAGAGAAAGTGATTTTCAAAGTTTCTCATTTAATATTTTCAGAAAATGAAATTTT
*
4425764 TGAAAAGTAAGAAAGCGATTTCCAAAGTTTCTTA-CCAGTAAACTATTTTCCAAATTGGTAAGTC
193 TGAAAAGTAAGAAAGCGATTTCCAAAGCTTCTTACCCAGTAAACTA-TTTCCAAATTGGTAAGTC
4425828 C
257 C
* * * * * *
4425829 TTCGGGCCATCAATAAGTCTTTCAAGCATAATGATTAAATCCTTCAGGTTATCTGTAAGTCTTTC
1 TTCGGGCCATCAATAAGTCTTTCGAGCATGATGATTAAATCCTTCGGGTCATTTGTCAGTCTTTC
** * * * * *
4425894 GAGTGAGATGATAAGTCATTCGGGTCATC-AGTAAGACCTTCAGGTAGGATGCTTTCACATGAAT
66 GAGCAAGATGATAAGTCTTTCGGGCCATCTA-TAAGACCTTCGGGCAGGATGTTTTCACATG-AT
* * * *
4425958 TTCAAAAATAAATGTGAAAGTGATTTTCAAAATTTCTCATTTAGTATTTTTCAGAAAATGAAATT
129 TT-AAAAA-AAAAGAGAAAGTGATTTTCAAAGTTTCTCATTTAATA-TTTTCAGAAAATGAAATT
* *
4426023 TTTGAATAGTAAGAAAGCGATTTCCAAAGCTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAG
191 TTTGAAAAGTAAGAAAGCGATTTCCAAAGCTTCTTACCCAGTAAACTATTTCC-AAATTGGTAAG
*
4426088 TCA
255 TCC
* * * * *
4426091 TTTGGGCCATCAGTAAGTCTTTCGAGCATTATCATTAAATCCTTCGGGTCATTTGTTAGTCTTTC
1 TTCGGGCCATCAATAAGTCTTTCGAGCATGATGATTAAATCCTTCGGGTCATTTGTCAGTCTTTC
*
4426156 GAGCAAGATGATAAGTCTTTCGGGCCATCTATACGACCTTCGGGCAGGATGTTTTCACATGATTT
66 GAGCAAGATGATAAGTCTTTCGGGCCATCTATAAGACCTTCGGGCAGGATGTTTTCACATGATTT
* * * *
4426221 AAAAAAAAGAGAGAAAGCGATTTTCAATGTTTCTCATTTAGTATTTTTTAGAAAATG-AATTTTT
131 AAAAAAAA-AGAGAAAGTGATTTTCAAAGTTTCTCATTTAATA-TTTTCAGAAAATGAAATTTTT
* *
4426285 TAAGAGTAAGAAAGCGATTTCCAAAGCTTCTTACCCAGTAAACTATTTACCAAATTTGG-AAGTC
194 GAAAAGTAAGAAAGCGATTTCCAAAGCTTCTTACCCAGTAAACTATTT-CCAAA-TTGGTAAGTC
4426349 C
257 C
* * * * *
4426350 TTCGGGCCATCAGTAATTCTTTCGAGCATGATGATTAAATTCTTCGGGTCATATGTCAGTCTTTT
1 TTCGGGCCATCAATAAGTCTTTCGAGCATGATGATTAAATCCTTCGGGTCATTTGTCAGTCTTTC
* * *
4426415 GAGCAAGATGATAAGTCCTTCAGGCCATCTATAAGACCTTCGGGCATGATGTTTTCACATGATTT
66 GAGCAAGATGATAAGTCTTTCGGGCCATCTATAAGACCTTCGGGCAGGATGTTTTCACATGA-TT
* *
4426480 TCAAAAAAAGATGAGAAAGTGATTTCCAAAGTTTCTCATTTAATATTTTCAGAAAATGAAATTTT
130 T-AAAAAAA-AAGAGAAAGTGATTTTCAAAGTTTCTCATTTAATATTTTCAGAAAATGAAATTTT
* *
4426545 TGAAAAGTAAGAAAGCGATTTCCAAAGTTTCTTACCCAGTAAATTATTTCCAAA
193 TGAAAAGTAAGAAAGCGATTTCCAAAGCTTCTTACCCAGTAAACTATTTCCAAA
4426599 ATCAGACCAT
Statistics
Matches: 677, Mismatches: 75, Indels: 32
0.86 0.10 0.04
Matches are distributed among these distances:
255 3 0.00
256 99 0.15
257 8 0.01
259 182 0.27
260 107 0.16
261 146 0.22
262 131 0.19
263 1 0.00
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.35
Consensus pattern (257 bp):
TTCGGGCCATCAATAAGTCTTTCGAGCATGATGATTAAATCCTTCGGGTCATTTGTCAGTCTTTC
GAGCAAGATGATAAGTCTTTCGGGCCATCTATAAGACCTTCGGGCAGGATGTTTTCACATGATTT
AAAAAAAAAGAGAAAGTGATTTTCAAAGTTTCTCATTTAATATTTTCAGAAAATGAAATTTTTGA
AAAGTAAGAAAGCGATTTCCAAAGCTTCTTACCCAGTAAACTATTTCCAAATTGGTAAGTCC
Found at i:4426595 original size:520 final size:518
Alignment explanation
Indices: 4425565--4426600 Score: 1487
Period size: 521 Copynumber: 2.0 Consensus size: 518
4425555 CTCTTACTTA
*
4425565 GTAAATCATTCGGGCCATCAATAAGTCTTTCGAGCATGATGATTAAGCCTTTCGGGTCATTTGTC
1 GTAAATCATTCGGGCCATCAATAAGTCTTTCGAGCATGATCATTAAGCCTTTCGGGTCATTTGTC
* * **
4425630 AGTCTTTCGAGCAATATGATAAGTCATTTGGGCCATACGTAATACCTTCGGTTAGGATGTTTTCA
66 AGTCTTTCGAGCAAGATGATAAGTCATTTGGGCCATACGTAAGACCTTCGGGCAGGATGTTTTCA
* *
4425695 CATGATTTAAAAAAATGAGAAAGTGATTTTCAAAGTTTCTCATTTAATATTTTTAGAAAATGGAA
131 CATGATTTAAAAAAAAGAGAAAGCGATTTTCAAAGTTTCTCATTTAATATTTTTAGAAAATGGAA
* *
4425760 TTTTTGAAAAGTAAGAAAGCGATTTCCAAAGTTTCTTACCAGTAAACTATTTTCCAAATTGGTAA
196 TTTTTGAAAAGTAAGAAAGCGATTTCCAAAGCTTCTTACCAGTAAACTATTTACCAAATTGGTAA
* *
4425825 GTCCTTCGGGCCATCAATAAGTCTTTCAAGCATAATGATTAAATCCTTCAGGTTATCTGTAAGTC
261 GTCCTTCGGGCCATCAATAAGTCTTTCAAGCATAATGATTAAATCCTTCAGGTCATATGTAAGTC
** * * *
4425890 TTTCGAGTGAGATGATAAGTCATTCGGGTCATCAGTAAGACCTTCAGGTAGGATGCTTTCACATG
326 TTTCGAGCAAGATGATAAGTCATTCAGGCCATCAGTAAGACCTTCAGGCAGGATGCTTTCACATG
* * *
4425955 AATTTCAAAAATAAATGTGAAAGTGATTTTCAAAATTTCTCATTTAGTATTTTTCAGAAAATGAA
391 AATTTCAAAAATAAATGAGAAAGTGATTTCCAAAATTTCTCATTTAATATTTTTCAGAAAATGAA
* *
4426020 ATTTTTGAATAGTAAGAAAGCGATTTCCAAAGCTTCTTACCTAGTAAACTATTTCCAAAATTG
456 ATTTTTGAAAAGTAAGAAAGCGATTTCCAAAGCTTCTTACCCAGTAAACTATTTCCAAAATTG
* * * * *
4426083 GTAAGTCATTTGGGCCATCAGTAAGTCTTTCGAGCATTATCATTAAATCC-TTCGGGTCATTTGT
1 GTAAATCATTCGGGCCATCAATAAGTCTTTCGAGCATGATCATT-AAGCCTTTCGGGTCATTTGT
*
4426147 TAGTCTTTCGAGCAAGATGATAAGTC-TTTCGGGCCAT-C-TATACGACCTTCGGGCAGGATGTT
65 CAGTCTTTCGAGCAAGATGATAAGTCATTT-GGGCCATACGTA-A-GACCTTCGGGCAGGATGTT
* *
4426209 TTCACATGATTTAAAAAAAAGAGAGAAAGCGATTTTCAATGTTTCTCATTTAGTATTTTTTAGAA
127 TTCACATGATTT-AAAAAAA-AGAGAAAGCGATTTTCAAAGTTTCTCATTTAATA-TTTTTAGAA
* *
4426274 AAT-GAATTTTTTAAGAGTAAGAAAGCGATTTCCAAAGCTTCTTACCCAGTAAACTATTTACCAA
189 AATGGAATTTTTGAAAAGTAAGAAAGCGATTTCCAAAGCTTCTTA-CCAGTAAACTATTTACCAA
* * * * * *
4426338 ATTTGG-AAGTCCTTCGGGCCATCAGTAATTCTTTCGAGCATGATGATTAAATTCTTCGGGTCAT
253 A-TTGGTAAGTCCTTCGGGCCATCAATAAGTCTTTCAAGCATAATGATTAAATCCTTCAGGTCAT
* * * * *
4426402 ATGTCAGTCTTTTGAGCAAGATGATAAGTCCTTCAGGCCATCTA-TAAGACCTTCGGGCATGATG
317 ATGTAAGTCTTTCGAGCAAGATGATAAGTCATTCAGGCCATC-AGTAAGACCTTCAGGCAGGATG
* * *
4426466 TTTTCACATGATTTTCAAAAA-AAGATGAGAAAGTGATTTCCAAAGTTTCTCATTTAATA-TTTT
381 CTTTCACATGAATTTCAAAAATAA-ATGAGAAAGTGATTTCCAAAATTTCTCATTTAATATTTTT
* *
4426529 CAGAAAATGAAATTTTTGAAAAGTAAGAAAGCGATTTCCAAAGTTTCTTACCCAGTAAATTATTT
445 CAGAAAATGAAATTTTTGAAAAGTAAGAAAGCGATTTCCAAAGCTTCTTACCCAGTAAACTATTT
4426594 CCAAAAT
510 CCAAAAT
4426601 CAGACCATCA
Statistics
Matches: 460, Mismatches: 47, Indels: 20
0.87 0.09 0.04
Matches are distributed among these distances:
516 2 0.00
517 5 0.01
518 112 0.24
519 11 0.02
520 142 0.31
521 183 0.40
522 5 0.01
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.35
Consensus pattern (518 bp):
GTAAATCATTCGGGCCATCAATAAGTCTTTCGAGCATGATCATTAAGCCTTTCGGGTCATTTGTC
AGTCTTTCGAGCAAGATGATAAGTCATTTGGGCCATACGTAAGACCTTCGGGCAGGATGTTTTCA
CATGATTTAAAAAAAAGAGAAAGCGATTTTCAAAGTTTCTCATTTAATATTTTTAGAAAATGGAA
TTTTTGAAAAGTAAGAAAGCGATTTCCAAAGCTTCTTACCAGTAAACTATTTACCAAATTGGTAA
GTCCTTCGGGCCATCAATAAGTCTTTCAAGCATAATGATTAAATCCTTCAGGTCATATGTAAGTC
TTTCGAGCAAGATGATAAGTCATTCAGGCCATCAGTAAGACCTTCAGGCAGGATGCTTTCACATG
AATTTCAAAAATAAATGAGAAAGTGATTTCCAAAATTTCTCATTTAATATTTTTCAGAAAATGAA
ATTTTTGAAAAGTAAGAAAGCGATTTCCAAAGCTTCTTACCCAGTAAACTATTTCCAAAATTG
Found at i:4426852 original size:49 final size:52
Alignment explanation
Indices: 4426793--4426904 Score: 135
Period size: 50 Copynumber: 2.2 Consensus size: 52
4426783 GTTGTGATTC
*
4426793 TTGACTTTCTCAG-AAAGA-GAGTCAACCTTTTAGT-GATGTTATT-CTCAAT
1 TTGACTTTCTCAGCAAAGAGGAGTCAACCTTTTAGTAG-TGTCATTCCTCAAT
* *
4426842 TTGACTTTCTC-GCAGAGAGGAGTCAACTTTTTAGTAGTGTCATTCCTCAAT
1 TTGACTTTCTCAGCAAAGAGGAGTCAACCTTTTAGTAGTGTCATTCCTCAAT
* *
4426893 GTGGCTTTCTCA
1 TTGACTTTCTCA
4426905 TGTATAGAAG
Statistics
Matches: 53, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
48 1 0.02
49 15 0.28
50 21 0.40
51 16 0.30
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.38
Consensus pattern (52 bp):
TTGACTTTCTCAGCAAAGAGGAGTCAACCTTTTAGTAGTGTCATTCCTCAAT
Found at i:4427731 original size:134 final size:133
Alignment explanation
Indices: 4427508--4428011 Score: 631
Period size: 134 Copynumber: 3.8 Consensus size: 133
4427498 AATGTTTGAT
* * * *
4427508 TTTCATATTTGGTCTTCCTGAAGAGCAGCGAAGCAAA-CCACTT-TCAATTCAATCTTCCCTGAA
1 TTTCAGATTTGGTCTTCCT-AAGAGCAGTGAAGCAAATCGA-TTCT-GATTCAATCTTCCCTGAA
* * * * * * *
4427571 GAGTATTGAAGTAGATCAAAGATTTCTCGAGTCTGATCTCCCTTAAAGAGTAATGGAGCATATTA
63 GAGCAGTGAAGTGGATCAAAGTTTTCTCGAGTCTGATCTCCCCTAAAGAGTAGTGGAGCAGATTA
4427636 TTCTTC
128 TTCTTC
* * *
4427642 TTTCAGAGTTGGTCTTCCTATAGAGAAGTGAAGCAAATCGATTCTGATTCAATCTTTCCTGAAGA
1 TTTCAGATTTGGTCTTCCTA-AGAGCAGTGAAGCAAATCGATTCTGATTCAATCTTCCCTGAAGA
* * ** * *
4427707 GCAGTGAAGTGGATCAAATTTTTCTCGAGTCTGATTTCCCCTAACTAGTAGTGGAGAAGA-CACT
65 GCAGTGAAGTGGATCAAAGTTTTCTCGAGTCTGATCTCCCCTAAAGAGTAGTGGAGCAGATTA-T
*
4427771 TATTC
129 TCTTC
* *
4427776 TTTCAGATTTGGTCTTCTTAAAGAGCAGTGAAGCAAATCGATTATGATTCAATCTTCCCTGAAGA
1 TTTCAGATTTGGTCTTCCT-AAGAGCAGTGAAGCAAATCGATTCTGATTCAATCTTCCCTGAAGA
** *
4427841 ATAGTGAAGTGGATCAAAGTTTTCTCGAGTCTGATCTCCCCTAAAGAGTAGTGGAGCAGATTCTT
65 GCAGTGAAGTGGATCAAAGTTTTCTCGAGTCTGATCTCCCCTAAAGAGTAGTGGAGCAGATTATT
4427906 CTTC
130 CTTC
* *
4427910 TTTCATATTTGG-CTTCCTGAAGAGCAGTGAAGCAAATCGATTCTGATTCAATCTTCCATGAAGA
1 TTTCAGATTTGGTCTTCCT-AAGAGCAGTGAAGCAAATCGATTCTGATTCAATCTTCCCTGAAGA
* *
4427974 GCAATGAAGTGGATCTAAA-TTTTCTCGAGTCTAATCTC
65 GCAGTGAAGTGGATC-AAAGTTTTCTCGAGTCTGATCTC
4428012 TGAAAACTAT
Statistics
Matches: 318, Mismatches: 45, Indels: 15
0.84 0.12 0.04
Matches are distributed among these distances:
133 80 0.25
134 234 0.74
135 4 0.01
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (133 bp):
TTTCAGATTTGGTCTTCCTAAGAGCAGTGAAGCAAATCGATTCTGATTCAATCTTCCCTGAAGAG
CAGTGAAGTGGATCAAAGTTTTCTCGAGTCTGATCTCCCCTAAAGAGTAGTGGAGCAGATTATTC
TTC
Found at i:4427996 original size:268 final size:267
Alignment explanation
Indices: 4427508--4428005 Score: 745
Period size: 268 Copynumber: 1.9 Consensus size: 267
4427498 AATGTTTGAT
* *
4427508 TTTCATATTTGGTCTTCCTGAAGAGCAGCGAAGCAAACCACTTTCAATTCAATCTTCCCTGAAGA
1 TTTCAGATTTGGTCTTCCTAAAGAGCAGCGAAGCAAACCACTTTCAATTCAATCTTCCCTGAAGA
* * * *
4427573 GTATTGAAGTAGATCAAAGATTTCTCGAGTCTGATCTCCCTTAAAGAGTAATGGAGCATATTATT
66 ATAGTGAAGTAGATCAAAGATTTCTCGAGTCTGATCTCCCCTAAAGAGTAATGGAGCAGATTATT
4427638 CTTCTTTCAGAGTTGGTCTTCCTATAGAGAAGTGAAGCAAATCGATTCTGATTCAATCTTTCCTG
131 CTTCTTTCAGAGTTGGTCTTCCTATAGAGAAGTGAAGCAAATCGATTCTGATTCAATCTTTCCTG
*
4427703 AAGAGCAGTGAAGTGGATCAAATTTTTCTCGAGTCTGATTTCCCCTAACTAGTAGTGGAGAAGAC
196 AAGAGCAATGAAGTGGATCAAA-TTTTCTCGAGTCTGATTTCCCCTAACTAGTAGTGGAGAAGAC
4427768 ACTTATTC
260 ACTTATTC
* * * *
4427776 TTTCAGATTTGGTCTTCTTAAAGAGCAGTGAAGCAAATCGA-TTAT-GATTCAATCTTCCCTGAA
1 TTTCAGATTTGGTCTTCCTAAAGAGCAGCGAAGCAAA-CCACTT-TCAATTCAATCTTCCCTGAA
* * * *
4427839 GAATAGTGAAGTGGATCAAAGTTTTCTCGAGTCTGATCTCCCCTAAAGAGTAGTGGAGCAGATTC
64 GAATAGTGAAGTAGATCAAAGATTTCTCGAGTCTGATCTCCCCTAAAGAGTAATGGAGCAGATTA
* * *
4427904 TTCTTCTTTCATATTTGG-CTTCCTGA-AGAGCAGTGAAGCAAATCGATTCTGATTCAATC-TTC
129 TTCTTCTTTCAGAGTTGGTCTTCCT-ATAGAGAAGTGAAGCAAATCGATTCTGATTCAATCTTTC
4427966 CATGAAGAGCAATGAAGTGGATCTAAATTTTCTCGAGTCT
193 C-TGAAGAGCAATGAAGTGGATC-AAATTTTCTCGAGTCT
4428006 AATCTCTGAA
Statistics
Matches: 207, Mismatches: 18, Indels: 11
0.88 0.08 0.05
Matches are distributed among these distances:
266 4 0.02
267 71 0.34
268 129 0.62
269 3 0.01
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (267 bp):
TTTCAGATTTGGTCTTCCTAAAGAGCAGCGAAGCAAACCACTTTCAATTCAATCTTCCCTGAAGA
ATAGTGAAGTAGATCAAAGATTTCTCGAGTCTGATCTCCCCTAAAGAGTAATGGAGCAGATTATT
CTTCTTTCAGAGTTGGTCTTCCTATAGAGAAGTGAAGCAAATCGATTCTGATTCAATCTTTCCTG
AAGAGCAATGAAGTGGATCAAATTTTCTCGAGTCTGATTTCCCCTAACTAGTAGTGGAGAAGACA
CTTATTC
Found at i:4428471 original size:22 final size:22
Alignment explanation
Indices: 4428443--4428491 Score: 98
Period size: 22 Copynumber: 2.2 Consensus size: 22
4428433 GATTATTGTT
4428443 TCAATAACTACTAATTCCAATC
1 TCAATAACTACTAATTCCAATC
4428465 TCAATAACTACTAATTCCAATC
1 TCAATAACTACTAATTCCAATC
4428487 TCAAT
1 TCAAT
4428492 TCCCTCTTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.41, C:0.27, G:0.00, T:0.33
Consensus pattern (22 bp):
TCAATAACTACTAATTCCAATC
Found at i:4440664 original size:3 final size:3
Alignment explanation
Indices: 4440656--4440727 Score: 144
Period size: 3 Copynumber: 24.0 Consensus size: 3
4440646 CCAAAAACCA
4440656 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
4440704 AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT
4440728 GGTGTTGGGA
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 69 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:4445698 original size:17 final size:17
Alignment explanation
Indices: 4445676--4445709 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
4445666 ATTCAAAAGA
4445676 TTTAAAATAATAATAAT
1 TTTAAAATAATAATAAT
4445693 TTTAAAATAATAATAAT
1 TTTAAAATAATAATAAT
4445710 AATTACATAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
TTTAAAATAATAATAAT
Found at i:4453354 original size:14 final size:13
Alignment explanation
Indices: 4453332--4453374 Score: 59
Period size: 13 Copynumber: 3.2 Consensus size: 13
4453322 AGAAGAGGAC
4453332 AAAAAGTAAAGTG
1 AAAAAGTAAAGTG
*
4453345 AAAAAGGTAAAGTA
1 AAAAA-GTAAAGTG
*
4453359 AAAAAATAAAGTG
1 AAAAAGTAAAGTG
4453372 AAA
1 AAA
4453375 GTTGTAGATA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
13 14 0.54
14 12 0.46
ACGTcount: A:0.67, C:0.00, G:0.19, T:0.14
Consensus pattern (13 bp):
AAAAAGTAAAGTG
Found at i:4458248 original size:20 final size:20
Alignment explanation
Indices: 4458219--4458265 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
4458209 ATTCTACCAC
*
4458219 ATGCAACTATA-TGCTCCTAA
1 ATGCATCTATATTG-TCCTAA
4458239 ATGCATCTATATTGTCCTAA
1 ATGCATCTATATTGTCCTAA
4458259 ATG-ATCT
1 ATGCATCT
4458266 TTTAGACATT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
19 4 0.16
20 19 0.76
21 2 0.08
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.36
Consensus pattern (20 bp):
ATGCATCTATATTGTCCTAA
Found at i:4462236 original size:8 final size:8
Alignment explanation
Indices: 4462225--4462254 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
4462215 TGAAAAAGAA
4462225 AGAAAAAG
1 AGAAAAAG
4462233 AG-AAAAG
1 AGAAAAAG
4462240 AGAAAAAG
1 AGAAAAAG
4462248 AGAAAAA
1 AGAAAAA
4462255 AAAAGATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
7 7 0.33
8 14 0.67
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (8 bp):
AGAAAAAG
Found at i:4462245 original size:15 final size:15
Alignment explanation
Indices: 4462225--4462253 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
4462215 TGAAAAAGAA
4462225 AGAAAAAGAGAAAAG
1 AGAAAAAGAGAAAAG
4462240 AGAAAAAGAGAAAA
1 AGAAAAAGAGAAAA
4462254 AAAAAGATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (15 bp):
AGAAAAAGAGAAAAG
Found at i:4464154 original size:21 final size:24
Alignment explanation
Indices: 4464089--4464159 Score: 110
Period size: 24 Copynumber: 3.0 Consensus size: 24
4464079 TATTTTATAG
*
4464089 TTTAATCCTTAAA-ATTATTA-TTT
1 TTTAATTCTTAAATA-TATTATTTT
4464112 TTTAATTCTTAAATATATTATTTT
1 TTTAATTCTTAAATATATTATTTT
4464136 TTTAATTCTTAAATATATTATTTT
1 TTTAATTCTTAAATATATTATTTT
4464160 AGTCAGCTAC
Statistics
Matches: 45, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
23 17 0.38
24 28 0.62
ACGTcount: A:0.34, C:0.06, G:0.00, T:0.61
Consensus pattern (24 bp):
TTTAATTCTTAAATATATTATTTT
Found at i:4475615 original size:12 final size:12
Alignment explanation
Indices: 4475595--4475624 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
4475585 TCAAATATAT
*
4475595 ATACTCGGCCCG
1 ATACCCGGCCCG
4475607 ATACCCGGCCCG
1 ATACCCGGCCCG
4475619 ATACCC
1 ATACCC
4475625 ATTTAAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.20, C:0.47, G:0.20, T:0.13
Consensus pattern (12 bp):
ATACCCGGCCCG
Found at i:4484586 original size:62 final size:62
Alignment explanation
Indices: 4484515--4484910 Score: 367
Period size: 62 Copynumber: 6.5 Consensus size: 62
4484505 GGAATTTCAA
* * *
4484515 TTTGACTTCCTCGTGAAAAGAAGACAATCTTTGTTATTCCTGACACTCCAACAGAGTTAATC
1 TTTGACTTCCTCGTGAAAAGAAGTCAATCTTTGTTATTCCTGACTCTCCAACAGAGTCAATC
* * * * *
4484577 TTTGACTTCCTCGTGAAGAGAAGTCAATCTTTTTTA-TCCTTGACTCCCCAGCAGAGTTAATC
1 TTTGACTTCCTCGTGAAAAGAAGTCAATCTTTGTTATTCC-TGACTCTCCAACAGAGTCAATC
* *
4484639 TTTGACTTCCTCGTGAAAATAAGTCAATCTTTGTTATTCCTAACTCTCCAACAGAGTCAATC
1 TTTGACTTCCTCGTGAAAAGAAGTCAATCTTTGTTATTCCTGACTCTCCAACAGAGTCAATC
* * * * **
4484701 TTTGACTTCCTCATGAAGAGAAGTCAATCTTTGTTATTCATGACTCTCTAGTAGAGTCAATC
1 TTTGACTTCCTCGTGAAAAGAAGTCAATCTTTGTTATTCCTGACTCTCCAACAGAGTCAATC
* * * * * * ** * * *
4484763 TTTGACTCCCTAGCGAAGAGGAGCCAATCCATG--ACTTCCT--C-AT--AGAGAGAATCCAATC
1 TTTGACTTCCTCGTGAAAAGAAGTCAATCTTTGTTA-TTCCTGACTCTCCA-ACAGAGT-CAATC
* * * * * * * *
4484821 CTTGACTTTCTCGTGAAAAGAAGTAAATCTTTGTTATCCCTGATTCCCCATCAGAGTTAATC
1 TTTGACTTCCTCGTGAAAAGAAGTCAATCTTTGTTATTCCTGACTCTCCAACAGAGTCAATC
* *
4484883 CTTAACTTCCTCGTGAAAAGAAGTCAAT
1 TTTGACTTCCTCGTGAAAAGAAGTCAAT
4484911 ATTTAAGATT
Statistics
Matches: 266, Mismatches: 56, Indels: 24
0.77 0.16 0.07
Matches are distributed among these distances:
56 1 0.00
57 4 0.02
58 28 0.11
59 5 0.02
60 2 0.01
61 7 0.03
62 211 0.79
63 7 0.03
64 1 0.00
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.33
Consensus pattern (62 bp):
TTTGACTTCCTCGTGAAAAGAAGTCAATCTTTGTTATTCCTGACTCTCCAACAGAGTCAATC
Found at i:4484606 original size:29 final size:29
Alignment explanation
Indices: 4484573--4484733 Score: 78
Period size: 29 Copynumber: 5.3 Consensus size: 29
4484563 CAACAGAGTT
4484573 AATCTTTGACTTCCTCGTGAAGAGAAGTC
1 AATCTTTGACTTCCTCGTGAAGAGAAGTC
* * *** *
4484602 AATCTTTTTTATCCTTGACTC-CCCAGCAG-AGTT
1 AATC--TTTGA--CTT-CCTCGTGAAG-AGAAGTC
* *
4484635 AATCTTTGACTTCCTCGTGAAAATAAGTC
1 AATCTTTGACTTCCTCGTGAAGAGAAGTC
* * *
4484664 AATCTTTGTTA-TTCCTAACTCTCCAACAG-AGTC
1 AATCTTTG--ACTTCCT--C-GT-GAAGAGAAGTC
*
4484697 AATCTTTGACTTCCTCATGAAGAGAAGTC
1 AATCTTTGACTTCCTCGTGAAGAGAAGTC
4484726 AATCTTTG
1 AATCTTTG
4484734 TTATTCATGA
Statistics
Matches: 95, Mismatches: 21, Indels: 32
0.64 0.14 0.22
Matches are distributed among these distances:
28 8 0.08
29 32 0.34
30 6 0.06
31 10 0.11
32 6 0.06
33 25 0.26
34 8 0.08
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.35
Consensus pattern (29 bp):
AATCTTTGACTTCCTCGTGAAGAGAAGTC
Found at i:4485081 original size:82 final size:82
Alignment explanation
Indices: 4484980--4489236 Score: 4859
Period size: 82 Copynumber: 52.1 Consensus size: 82
4484970 CCTTGAAGAG
* * * * * *
4484980 AAGAGAAACAAATCAAGTCTGATCTCCCCTAAAAGAATAGTAGAGCAAACCCATCTTCCAAAATT
1 AAGAGGAACAGATCAAGTCTGATCTCCCCTGAAAGAATAGTGGAGCAGACCCGTCTTCCAAAATT
*
4485045 GATCTGACTACCTGAAA
66 GATCTGACTACCCGAAA
* * * *
4485062 AAGAGGAACATATCAAGTCTAATCTCCCCTGAAAGAATAGTGGAACAGACTCGTCTTCCAAAATT
1 AAGAGGAACAGATCAAGTCTGATCTCCCCTGAAAGAATAGTGGAGCAGACCCGTCTTCCAAAATT
**
4485127 GATCTGACTACCTAAAA
66 GATCTGACTACCCGAAA
* ** * * *
4485144 AAGAGGAACAAATCAAGTCTGATAACCCCTGAAAAAATAGTAGAGCAGACCCGTCTTCCAAATTT
1 AAGAGGAACAGATCAAGTCTGATCTCCCCTGAAAGAATAGTGGAGCAGACCCGTCTTCCAAAATT
* *
4485209 GATATGACTACCCCAAA
66 GATCTGACTACCCGAAA
* * * * * * * * *
4485226 AAAAGGAAAAAATCAAGTCTGATCTCCCCTGAAAGAATAATGGAGCAAACTCATCTTACAAAGTT
1 AAGAGGAACAGATCAAGTCTGATCTCCCCTGAAAGAATAGTGGAGCAGACCCGTCTTCCAAAATT
* * **
4485291 GATATGAGTACCCTTAA
66 GATCTGACTACCCGAAA
* * * ** * *
4485308 AAGATGAACAGATCAAGTCTAATCTCCCCTGAAAGAATAGTGGAGCAAACTTGTCTCCCAACATT
1 AAGAGGAACAGATCAAGTCTGATCTCCCCTGAAAGAATAGTGGAGCAGACCCGTCTTCCAAAATT
*
4485373 GATCTGACTACCCAAAA
66 GATCTGACTACCCGAAA
* * *
4485390 AAGAGGAACATATCAAGTATGATCTCCCCTGAAAGAATAGTGGCGCAGACCCGTCTTCCAAAATT
1 AAGAGGAACAGATCAAGTCTGATCTCCCCTGAAAGAATAGTGGAGCAGACCCGTCTTCCAAAATT
*
4485455 GATCTGACTACCTGAAA
66 GATCTGACTACCCGAAA
* * * * * *
4485472 AAGAGGAACATATCAAGTCTGATCTCCACTGAAAGAATAGTGGAGAACACCCGTCCTCCAACATT
1 AAGAGGAACAGATCAAGTCTGATCTCCCCTGAAAGAATAGTGGAGCAGACCCGTCTTCCAAAATT
*
4485537 GATCTGAATACCCGAAA
66 GATCTGACTACCCGAAA
* * * *
4485554 GAGATGAACAGATCAAGTCTGATCTCCCCTGAAAGAATAATGGAGCAGACCCGTCTTCCAAAATA
1 AAGAGGAACAGATCAAGTCTGATCTCCCCTGAAAGAATAGTGGAGCAGACCCGTCTTCCAAAATT
*
4485619 GATC-GACTACTCGAAA
66 GATCTGACTACCCGAAA
* * * * * * *
4485635 AAGAAGAACATATCAACTTTGATCTCTCCTGAAAGAATAGTAGAGCAGACCCATCTTCCAAAATT
1 AAGAGGAACAGATCAAGTCTGATCTCCCCTGAAAGAATAGTGGAGCAGACCCGTCTTCCAAAATT
*
4485700 GATCTGACTAACCGAAA
66 GATCTGACTACCCGAAA
* * * * * *
4485717 AAAAGGAACAGATCAAGTTTGATCTCCCAT-AAATGAATAGTGGAGCAAACTCGTCTTCCAACAT
1 AAGAGGAACAGATCAAGTCTGATCTCCCCTGAAA-GAATAGTGGAGCAGACCCGTCTTCCAAAAT
4485781 TGATCTGACTACCC-AAA
65 TGATCTGACTACCCGAAA
* * * * * ** **
4485798 AAAAGGAATAGATCAAGTCTGGTCTCCCCTGAAAGAATATTGGAGCATATTCACCTTCCAAAATT
1 AAGAGGAACAGATCAAGTCTGATCTCCCCTGAAAGAATAGTGGAGCAGACCCGTCTTCCAAAATT
* *
4485863 GATCTGAATACCCAAAA
66 GATCTGACTACCCGAAA
* * *
4485880 AAGAGGAACAGATCAAGTTTGATCTCCCCTGAAAGAATAATGGAGTAGACCCGTCTTCCAAAATT
1 AAGAGGAACAGATCAAGTCTGATCTCCCCTGAAAGAATAGTGGAGCAGACCCGTCTTCCAAAATT
*
4485945 GATCTGAATACCCGAAA
66 GATCTGACTACCCGAAA
* * * * * * * *
4485962 GA-AGGAATAGATCAAGTCTGATCTCCCCTGAAAGAAAAGTGGATCAAACCCTTCTTACAAAGTT
1 AAGAGGAACAGATCAAGTCTGATCTCCCCTGAAAGAATAGTGGAGCAGACCCGTCTTCCAAAATT
*
4486026 GATCTGACTACCCAAAA
66 GATCTGACTACCCGAAA
* * * * *
4486043 AAGAGGAACAGATCAAGTCTGATCTGCCCTGAAAGAATAGTGGAGCAGACTCATCTTCTAACATT
1 AAGAGGAACAGATCAAGTCTGATCTCCCCTGAAAGAATAGTGGAGCAGACCCGTCTTCCAAAATT
*
4486108 GATGTGACTACCCGAAA
66 GATCTGACTACCCGAAA
* * * * * * * * *
4486125 AAAAAGAACATATCCAGTCTGATCTCCCCTAAAAGAATAGTAGAGCATACTCATCTTCCAAAATT
1 AAGAGGAACAGATCAAGTCTGATCTCCCCTGAAAGAATAGTGGAGCAGACCCGTCTTCCAAAATT
*
4486190 GATCTGACTACTCGAAA
66 GATCTGACTACCCGAAA
* * * ** * *
4486207 AAGAGGAACAGATCAAGTTTGATCTCCCTTGAAAGAATAGTGGAGTAGACTTGTCTTCTAACATT
1 AAGAGGAACAGATCAAGTCTGATCTCCCCTGAAAGAATAGTGGAGCAGACCCGTCTTCCAAAATT
*
4486272 GATCTGACTACGCGAAA
66 GATCTGACTACCCGAAA
* * *
4486289 AAGAGGAACAGATCAAGTCTGGTCTCCCCTGAAAGAATAGTGGAGTAGACTCGTCTTCCAAAATT
1 AAGAGGAACAGATCAAGTCTGATCTCCCCTGAAAGAATAGTGGAGCAGACCCGTCTTCCAAAATT
* *
4486354 GATATGACTACTCGAAAA
66 GATCTGACTACCCG-AAA
4486372 AAGAGGAACTA-ATCAAGTCTGATCTCCCCTGAAAGAATAGTGGAGCAGACCCGTCTTCCAAAAT
1 AAGAGGAAC-AGATCAAGTCTGATCTCCCCTGAAAGAATAGTGGAGCAGACCCGTCTTCCAAAAT
*
4486436 TGATCTAACTACCCGAAA
65 TGATCTGACTACCCGAAA
* * * * * *
4486454 AAGAGGAACAGATCAAGTTTGATCTCCCCTGAATGAATAGTGGAGCAAACTCTTCTTCCAACATT
1 AAGAGGAACAGATCAAGTCTGATCTCCCCTGAAAGAATAGTGGAGCAGACCCGTCTTCCAAAATT
4486519 GATCTGACTACCC-AAA
66 GATCTGACTACCCGAAA
* * * * * * * * *
4486535 AAAAGGAATAGATCAAGTTTAATCTCCCCTAAAAGAATAGTGTAGCAGACTCGCCTTTCAAAATT
1 AAGAGGAACAGATCAAGTCTGATCTCCCCTGAAAGAATAGTGGAGCAGACCCGTCTTCCAAAATT
*
4486600 GATCTGAATACCCGAAA
66 GATCTGACTACCCGAAA
* * * * *
4486617 AAGAGGAACATATCAAGTCTGATCACCCCTGAAAGAATAGTGGAGTAGCCCCGTATTCCAAAATT
1 AAGAGGAACAGATCAAGTCTGATCTCCCCTGAAAGAATAGTGGAGCAGACCCGTCTTCCAAAATT
*
4486682 GATCTGACTACTC--AA
66 GATCTGACTACCCGAAA
* * * * * * *
4486697 AAGAAGGAATAGATCAAGTTTGATCTCCCCTGAAAGAAAAGTGGATCAAACCCTTCTTCCAAAGT
1 AAG-AGGAACAGATCAAGTCTGATCTCCCCTGAAAGAATAGTGGAGCAGACCCGTCTTCCAAAAT
4486762 TGATCTGACTACCC-AAA
65 TGATCTGACTACCCGAAA
* * * * *
4486779 AATGAGGAACAGATCAAGTCTGATCTACCCTGAAAGAATAGTGGAACAGACTCGTCTTCTAACAT
1 AA-GAGGAACAGATCAAGTCTGATCTCCCCTGAAAGAATAGTGGAGCAGACCCGTCTTCCAAAAT
* *
4486844 TAAACTGACTACCCGAAAA
65 TGATCTGACTACCCG-AAA
* * * * ** * * *
4486863 AAAAAGAACATATCCAGTCTGATCTCTTCTGAAAGAATAGTGGAGTAGACCCGTTTTCCAACATT
1 AAGAGGAACAGATCAAGTCTGATCTCCCCTGAAAGAATAGTGGAGCAGACCCGTCTTCCAAAATT
4486928 GATCTGACTACCCGAAA
66 GATCTGACTACCCGAAA
* * * *
4486945 ATGAGGAACAGATCAAGTCTGATCTCCCTTGAAAGAATAGTGGAGCAGACCCGTCTTACAAAATA
1 AAGAGGAACAGATCAAGTCTGATCTCCCCTGAAAGAATAGTGGAGCAGACCCGTCTTCCAAAATT
* *
4487010 GATC-AACTACCCAAAA
66 GATCTGACTACCCGAAA
* * * * **
4487026 AAGAGGAACATATCAAGTTTGATCTCCCATGAAAGAATAGTAGAGCAGACCTATCTTCCAAAATT
1 AAGAGGAACAGATCAAGTCTGATCTCCCCTGAAAGAATAGTGGAGCAGACCCGTCTTCCAAAATT
*
4487091 GATCTGACTACTCGAAA
66 GATCTGACTACCCGAAA
* * * * * * * * *
4487108 AAGAGGAACATATCAAGTTTGATCTCCCCTGAATGAGTAGTGGAGTAAACTCATCTTCCAACATT
1 AAGAGGAACAGATCAAGTCTGATCTCCCCTGAAAGAATAGTGGAGCAGACCCGTCTTCCAAAATT
4487173 GATCTGACTACCC-AAA
66 GATCTGACTACCCGAAA
* * * * * *
4487189 AAAAGGAATAGATCAAGTCTGGTCTCCCCTAAAAGAATAGTGGAGCAGACTCGCCTTCCAAAATT
1 AAGAGGAACAGATCAAGTCTGATCTCCCCTGAAAGAATAGTGGAGCAGACCCGTCTTCCAAAATT
4487254 GATCTGACTACCCGAAA
66 GATCTGACTACCCGAAA
* * *
4487271 AAGAGGAACATATCAAGTCTGATCTCCCCTGAAAGAATAGTGGAGTAGACCCATCTTCCAAAATT
1 AAGAGGAACAGATCAAGTCTGATCTCCCCTGAAAGAATAGTGGAGCAGACCCGTCTTCCAAAATT
4487336 GATCTGACTACCCG-AA
66 GATCTGACTACCCGAAA
* * ** * * * * * *
4487352 AA-ATGAATAGATCAAGTCTGATCTTACCTGAAAGAAAAGTGGATCAAACCCTTCTTACAAAGTT
1 AAGAGGAACAGATCAAGTCTGATCTCCCCTGAAAGAATAGTGGAGCAGACCCGTCTTCCAAAATT
*
4487416 GATCTGACTACCCAAAA
66 GATCTGACTACCCGAAA
* * * *
4487433 AAGAGGAACAGATCAAGTCTGATCTGCCCTGAAAGAATAGTGGAGCAGACTCGTCTTCTAACATT
1 AAGAGGAACAGATCAAGTCTGATCTCCCCTGAAAGAATAGTGGAGCAGACCCGTCTTCCAAAATT
4487498 GATCTGACTACCCGAAAA
66 GATCTGACTACCCG-AAA
* * * * * * * * *
4487516 AAAAAGAACATATCCAGTCTGATCTCCCCTAAAAGAATAGTAGAGCATACTCATCTTCCAAAATT
1 AAGAGGAACAGATCAAGTCTGATCTCCCCTGAAAGAATAGTGGAGCAGACCCGTCTTCCAAAATT
4487581 GATCTGACTACCCGAAA
66 GATCTGACTACCCGAAA
* * ** * * * * *
4487598 AAAAGTAACATTTCAAGTATGAACTCCCATGAAAGAATAGTGGAGCAGACCCATCTTCCAACATT
1 AAGAGGAACAGATCAAGTCTGATCTCCCCTGAAAGAATAGTGGAGCAGACCCGTCTTCCAAAATT
*
4487663 GATCTGACTACCCAAAA
66 GATCTGACTACCCGAAA
* * * * * * * *
4487680 AAGAGAAATAAATCAATTCTGATCTCTCCTAAAAGAATAGTGGAGCAGACCCGTCTTCTAAAATA
1 AAGAGGAACAGATCAAGTCTGATCTCCCCTGAAAGAATAGTGGAGCAGACCCGTCTTCCAAAATT
*
4487745 GATC-GACTACTCGAAA
66 GATCTGACTACCCGAAA
* * * *
4487761 AAGAGGAACATATCAAGTTTGATCTCCCCTGAAAGAATAGTAGAGCAGACTCGTCTTCCAAAATT
1 AAGAGGAACAGATCAAGTCTGATCTCCCCTGAAAGAATAGTGGAGCAGACCCGTCTTCCAAAATT
*
4487826 GATCTAACTACCCGAAA
66 GATCTGACTACCCGAAA
* * * * * *
4487843 AAGAGGAACAGATCAAGTTTGATCTCCCCTGAATGAATAGTGGAGCAAACTCTTCTTCCACAATT
1 AAGAGGAACAGATCAAGTCTGATCTCCCCTGAAAGAATAGTGGAGCAGACCCGTCTTCCAAAATT
4487908 GATCTGACTACCC-AAA
66 GATCTGACTACCCGAAA
* * * * * *
4487924 AAAAGGAATAGATCAAGTCT-AGTCTCCCCTAAAAGAATAGTGGAGCAAACTCGCCTTCCAAAAT
1 AAGAGGAACAGATCAAGTCTGA-TCTCCCCTGAAAGAATAGTGGAGCAGACCCGTCTTCCAAAAT
*
4487988 TGATCTGAATACCCGAAA
65 TGATCTGACTACCCGAAA
* * * * * *
4488006 AAGAGGAACATATCAAGTATGATCACCCCTGAAAGAATAGTGGAGTAGACCCATATTCCAAAATT
1 AAGAGGAACAGATCAAGTCTGATCTCCCCTGAAAGAATAGTGGAGCAGACCCGTCTTCCAAAATT
* *
4488071 GATTTGACTACTCGAAA
66 GATCTGACTACCCGAAA
* * * * * * * *
4488088 GA-AGGAATAGATCAAGTCTGATCTCCCTTGAAAGAAAAGTGGATCAAACCCTTCTTCCAAAGTT
1 AAGAGGAACAGATCAAGTCTGATCTCCCCTGAAAGAATAGTGGAGCAGACCCGTCTTCCAAAATT
*
4488152 GATCTGACTACCCAAAA
66 GATCTGACTACCCGAAA
* * * * *
4488169 AAGAGGAACAGATCAAGTCTGATCTGCCCTGAAAGAATAGTGGAACAGACTCGTCTTCTAACATT
1 AAGAGGAACAGATCAAGTCTGATCTCCCCTGAAAGAATAGTGGAGCAGACCCGTCTTCCAAAATT
* *
4488234 AAACTGACTACCCGAAAA
66 GATCTGACTACCCG-AAA
* * * * * * *
4488252 AAAAGGAACATATCCAGTCTGATCTCTCCTGAAAGAATAGTGGAGCATACTCATCTTCCAAAATT
1 AAGAGGAACAGATCAAGTCTGATCTCCCCTGAAAGAATAGTGGAGCAGACCCGTCTTCCAAAATT
*
4488317 GATCTGACTACCTGAAA
66 GATCTGACTACCCGAAA
** ** * * * * * *
4488334 AA-AATAACATTTCAAGTATGAACTCCCCTGAAAGAATAGTGGAGTAGACCCATTTTCCAACATT
1 AAGAGGAACAGATCAAGTCTGATCTCCCCTGAAAGAATAGTGGAGCAGACCCGTCTTCCAAAATT
*
4488398 GAACTGACTACCCGAAA
66 GATCTGACTACCCGAAA
* * * ** * *
4488415 ATGAGGAACAGATTAAGTCTGATCTCCCTTGAAAGAATAGTGGATTAGACTCGTCTTCCAAAATA
1 AAGAGGAACAGATCAAGTCTGATCTCCCCTGAAAGAATAGTGGAGCAGACCCGTCTTCCAAAATT
4488480 GATC-GACTACCCGAAA
66 GATCTGACTACCCGAAA
* * * * * *
4488496 AAAAGGAACATATCAAGTTTGATCTCCCCTGAAAGAATAATAGAGCAGACCCATCTTCCAAAATT
1 AAGAGGAACAGATCAAGTCTGATCTCCCCTGAAAGAATAGTGGAGCAGACCCGTCTTCCAAAATT
*
4488561 GATCTGACTACTCGAAA
66 GATCTGACTACCCGAAA
* * * * *
4488578 AAGAGGAACATATCAAGTTTGATCTCCCCTGAATGAATAGTGGAGCAAACTCGTCTT-CAAACAT
1 AAGAGGAACAGATCAAGTCTGATCTCCCCTGAAAGAATAGTGGAGCAGACCCGTCTTCCAAA-AT
*
4488642 TGATCTGACTACCCAAAA
65 TGATCTGACTACCCGAAA
* * * * * *
4488660 AAAAGTAATAGATCAAGTCTGGTCTCCCCTGAAAGAATAGTGGAGCAGACTCGCCTTCCAAAATT
1 AAGAGGAACAGATCAAGTCTGATCTCCCCTGAAAGAATAGTGGAGCAGACCCGTCTTCCAAAATT
4488725 GATCTGACTACCCGAAA
66 GATCTGACTACCCGAAA
* * *
4488742 AAGAGGAACATATCAAATCTGATCTCCCCTGAAAGAATAGTGGAGTAGACCCGTCTTCCAAAATT
1 AAGAGGAACAGATCAAGTCTGATCTCCCCTGAAAGAATAGTGGAGCAGACCCGTCTTCCAAAATT
*
4488807 GATCTAACTACCCGAAA
66 GATCTGACTACCCGAAA
* * * * * * * * * *
4488824 GA-AGGAATAGATCAAGTATGATCTCACCTGAAAGAAAAGTGGATCAAACCCTTCTTACAAAGTT
1 AAGAGGAACAGATCAAGTCTGATCTCCCCTGAAAGAATAGTGGAGCAGACCCGTCTTCCAAAATT
*
4488888 GATCTGACTACCCAAAA
66 GATCTGACTACCCGAAA
* * * ***
4488905 AAGAGGAACATATCAAGTCTGATCTGCCCTAAAAGAATAGTGGAGCAGACTTATCTTCCAAAATT
1 AAGAGGAACAGATCAAGTCTGATCTCCCCTGAAAGAATAGTGGAGCAGACCCGTCTTCCAAAATT
* *
4488970 GATTTGACTACCCAAAA
66 GATCTGACTACCCGAAA
* * ** * * * * *
4488987 AAAAGTAACATTTCAAGTATAAACTCCCCTGAAAGAATAGTGGAGCAGACTCGTCTTCCAACATT
1 AAGAGGAACAGATCAAGTCTGATCTCCCCTGAAAGAATAGTGGAGCAGACCCGTCTTCCAAAATT
4489052 GATCTGACTACCCGAAA
66 GATCTGACTACCCGAAA
* * * *
4489069 AAGAGGAACAAATCAATTCTGATCTCCCCTAAAAGAATAGTGGAGCAGACCCGTCTTCCAAAATA
1 AAGAGGAACAGATCAAGTCTGATCTCCCCTGAAAGAATAGTGGAGCAGACCCGTCTTCCAAAATT
* *
4489134 GATC-AACAACCCGAAA
66 GATCTGACTACCCGAAA
* * * * * * * *
4489150 AAGAGGAAAATATCAAGTTTGATCTCCCCTGAAAGAATAATAGAGCATACCCATCTTCCAAAACT
1 AAGAGGAACAGATCAAGTCTGATCTCCCCTGAAAGAATAGTGGAGCAGACCCGTCTTCCAAAATT
*
4489215 GATCTAACTACCCGAAA
66 GATCTGACTACCCGAAA
4489232 AAGAG
1 AAGAG
4489237 CCTGAAAGAA
Statistics
Matches: 3510, Mismatches: 634, Indels: 62
0.83 0.15 0.01
Matches are distributed among these distances:
80 69 0.02
81 959 0.27
82 2193 0.62
83 283 0.08
84 6 0.00
ACGTcount: A:0.38, C:0.22, G:0.17, T:0.23
Consensus pattern (82 bp):
AAGAGGAACAGATCAAGTCTGATCTCCCCTGAAAGAATAGTGGAGCAGACCCGTCTTCCAAAATT
GATCTGACTACCCGAAA
Done.