Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000260.1 Hibiscus syriacus cultivar Beakdansim tig00000477_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5583615
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 5 of 26
Found at i:960578 original size:20 final size:20
Alignment explanation
Indices: 960532--960585 Score: 56
Period size: 20 Copynumber: 2.7 Consensus size: 20
960522 GATTTACTTT
* *
960532 TTGTTTATATTATTTAATTT
1 TTGTTTATATTATTGAATTG
*
960552 TTATTTATATTTATTGAA-TG
1 TTGTTTATA-TTATTGAATTG
*
960572 TTGTTTATACTATT
1 TTGTTTATATTATT
960586 TTAAATTTTA
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
19 4 0.14
20 17 0.61
21 7 0.25
ACGTcount: A:0.26, C:0.02, G:0.07, T:0.65
Consensus pattern (20 bp):
TTGTTTATATTATTGAATTG
Found at i:968358 original size:19 final size:19
Alignment explanation
Indices: 968336--968372 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
968326 ATGTACATCC
968336 TAAAATATTTTAATTAGGT
1 TAAAATATTTTAATTAGGT
*
968355 TAAAATATTTTAGTTAGG
1 TAAAATATTTTAATTAGG
968373 GAAAATAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.14, T:0.46
Consensus pattern (19 bp):
TAAAATATTTTAATTAGGT
Found at i:968379 original size:18 final size:19
Alignment explanation
Indices: 968337--968379 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
968327 TGTACATCCT
*
968337 AAAATATTTTAATTAGGTT
1 AAAATATTTTAATTAGGTG
*
968356 AAAATATTTTAGTTAGG-G
1 AAAATATTTTAATTAGGTG
968374 AAAATA
1 AAAATA
968380 ATTAATTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 6 0.27
19 16 0.73
ACGTcount: A:0.47, C:0.00, G:0.14, T:0.40
Consensus pattern (19 bp):
AAAATATTTTAATTAGGTG
Found at i:968896 original size:101 final size:101
Alignment explanation
Indices: 968764--968954 Score: 251
Period size: 101 Copynumber: 1.9 Consensus size: 101
968754 TCGACCAAAC
* * * *
968764 CCAAAACTCAAACATTGTTCATCTTGTGTTCATCCCAAAATCC-TAGTTTGATCTGTACAAACAC
1 CCAAAACTCAAACATTATTCATCTTGTGTTCATCCCAAAA-CCTTAGTTGGATATGTACAAACAA
*
968828 AATAGATCTTTCCCAACCTATTTTTTTTATGAGAACT
65 AAAAGATCTTTCCCAACCTATTTTTTTTATGAGAACT
* *
968865 CCAAAAGC-CAAACATTATTCATCTTTTGTTCATCCCAAAACCTTAGTTGGATATGTAGAAACAA
1 CCAAAA-CTCAAACATTATTCATCTTGTGTTCATCCCAAAACCTTAGTTGGATATGTACAAACAA
** * *
968929 AAAATTTCTTTCTCAACTTATTTTTT
65 AAAAGATCTTTCCCAACCTATTTTTT
968955 AAGATCAAAA
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
100 2 0.03
101 74 0.96
102 1 0.01
ACGTcount: A:0.33, C:0.22, G:0.08, T:0.37
Consensus pattern (101 bp):
CCAAAACTCAAACATTATTCATCTTGTGTTCATCCCAAAACCTTAGTTGGATATGTACAAACAAA
AAAGATCTTTCCCAACCTATTTTTTTTATGAGAACT
Found at i:969158 original size:22 final size:22
Alignment explanation
Indices: 969133--969187 Score: 110
Period size: 22 Copynumber: 2.5 Consensus size: 22
969123 CTTCCCCTTC
969133 TTCTCTTCCTCAAACCGTTCCT
1 TTCTCTTCCTCAAACCGTTCCT
969155 TTCTCTTCCTCAAACCGTTCCT
1 TTCTCTTCCTCAAACCGTTCCT
969177 TTCTCTTCCTC
1 TTCTCTTCCTC
969188 TTATCTTCCA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.11, C:0.42, G:0.04, T:0.44
Consensus pattern (22 bp):
TTCTCTTCCTCAAACCGTTCCT
Found at i:971996 original size:30 final size:30
Alignment explanation
Indices: 971962--972065 Score: 136
Period size: 30 Copynumber: 3.5 Consensus size: 30
971952 CGGAGTAATT
*
971962 GGATGGTGGGGTGGTGGAGGCGGTGAAAAC
1 GGATGGTGTGGTGGTGGAGGCGGTGAAAAC
* * * *
971992 GGATGGTTTGGAGGTGGAGGTGGTGAAAAT
1 GGATGGTGTGGTGGTGGAGGCGGTGAAAAC
* *
972022 GGATGGTGTGGTGGGGGAGGCGGTGAAACC
1 GGATGGTGTGGTGGTGGAGGCGGTGAAAAC
*
972052 GGATGGTTTGGTGG
1 GGATGGTGTGGTGG
972066 CAGAGGTGGT
Statistics
Matches: 62, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 62 1.00
ACGTcount: A:0.18, C:0.05, G:0.55, T:0.22
Consensus pattern (30 bp):
GGATGGTGTGGTGGTGGAGGCGGTGAAAAC
Found at i:972035 original size:60 final size:60
Alignment explanation
Indices: 971961--972076 Score: 178
Period size: 60 Copynumber: 1.9 Consensus size: 60
971951 GCGGAGTAAT
* **
971961 TGGATGGTGGGGTGGTGGAGGCGGTGAAAACGGATGGTTTGGAGGTGGAGGTGGTGAAAA
1 TGGATGGTGGGGTGGGGGAGGCGGTGAAAACGGATGGTTTGGAGGCAGAGGTGGTGAAAA
* * *
972021 TGGATGGTGTGGTGGGGGAGGCGGTGAAACCGGATGGTTTGGTGGCAGAGGTGGTG
1 TGGATGGTGGGGTGGGGGAGGCGGTGAAAACGGATGGTTTGGAGGCAGAGGTGGTG
972077 GCGAGGGAGG
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
60 50 1.00
ACGTcount: A:0.18, C:0.05, G:0.54, T:0.22
Consensus pattern (60 bp):
TGGATGGTGGGGTGGGGGAGGCGGTGAAAACGGATGGTTTGGAGGCAGAGGTGGTGAAAA
Found at i:977302 original size:2 final size:2
Alignment explanation
Indices: 977295--977322 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
977285 AATGAAAATA
977295 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
977323 TTGAAATAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:977405 original size:17 final size:17
Alignment explanation
Indices: 977383--977415 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
977373 TATATAAAAA
977383 ATTAAAATAAT-TTTTAC
1 ATTAAAA-AATATTTTAC
977400 ATTAAAAAATATTTTA
1 ATTAAAAAATATTTTA
977416 TAGTGTTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (17 bp):
ATTAAAAAATATTTTAC
Found at i:978271 original size:2 final size:2
Alignment explanation
Indices: 978264--978293 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
978254 AATGAAAATA
978264 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
978294 TTGAAATAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:978376 original size:17 final size:17
Alignment explanation
Indices: 978354--978386 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
978344 TATATAAAAA
978354 ATTAAAATAAT-TTTTAC
1 ATTAAAA-AATATTTTAC
978371 ATTAAAAAATATTTTA
1 ATTAAAAAATATTTTA
978387 TAGTGTTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (17 bp):
ATTAAAAAATATTTTAC
Found at i:979551 original size:106 final size:106
Alignment explanation
Indices: 979366--979578 Score: 372
Period size: 106 Copynumber: 2.0 Consensus size: 106
979356 TTCTATCTAT
*
979366 ATTTGATCTTTCTTTTACCTACATTCATTTAATGAAGATATATGCATGAACCAGTTTAAGATTTT
1 ATTTGATCTTTCTTTTACCTACATTCATTTAATGAAGATATATACATGAACCAGTTTAAGATTTT
* *
979431 ATAGGATACGTACAAATTTAAAAATTTATATTAAAAATTTA
66 ATAGGAGACGTACAAATTTAAAAAATTATATTAAAAATTTA
* *
979472 ATTTGATCTTTCTTTTACCTACATTCATTTAATGAAGTTATATACATGAACCATTTTAAGATTTT
1 ATTTGATCTTTCTTTTACCTACATTCATTTAATGAAGATATATACATGAACCAGTTTAAGATTTT
*
979537 GTAGGAGACGTACAAATTTAAAAAATTATATTAAAAATTTA
66 ATAGGAGACGTACAAATTTAAAAAATTATATTAAAAATTTA
979578 A
1 A
979579 AAGGTACGAA
Statistics
Matches: 101, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
106 101 1.00
ACGTcount: A:0.39, C:0.10, G:0.09, T:0.41
Consensus pattern (106 bp):
ATTTGATCTTTCTTTTACCTACATTCATTTAATGAAGATATATACATGAACCAGTTTAAGATTTT
ATAGGAGACGTACAAATTTAAAAAATTATATTAAAAATTTA
Found at i:979882 original size:60 final size:59
Alignment explanation
Indices: 979779--979965 Score: 148
Period size: 60 Copynumber: 3.1 Consensus size: 59
979769 CATGCCCTTC
* * * *
979779 AATTATGACCCTCATT-TCAAATT-GGTCCCTAAACTTTTAAACATTTTAATTTCATCCCTA
1 AATTATGATCTTCATTCT-AAATTAGTTCCC-AAACTTTTGAACATTTTAATTTCATCCC-A
* * * ** **
979839 AATTATG-GCTTTTATTTTGGATTAG-TCCTCAAACTTTTGAACATTTTGGTTTCATCCCCCA
1 AATTATGATC-TTCATTCTAAATTAGTTCC-CAAACTTTTGAACATTTTAATTTCAT--CCCA
* * *
979900 AACTATGATCTTCATTCTAAATTAGTTCCCAAACATTTTGAACATATCAATTTCATCCCA
1 AATTATGATCTTCATTCTAAATTAGTTCCCAAAC-TTTTGAACATTTTAATTTCATCCCA
979960 AATTAT
1 AATTAT
979966 ATGTATACAT
Statistics
Matches: 99, Mismatches: 19, Indels: 18
0.73 0.14 0.13
Matches are distributed among these distances:
59 1 0.01
60 48 0.48
61 26 0.26
62 24 0.24
ACGTcount: A:0.30, C:0.21, G:0.07, T:0.41
Consensus pattern (59 bp):
AATTATGATCTTCATTCTAAATTAGTTCCCAAACTTTTGAACATTTTAATTTCATCCCA
Found at i:980262 original size:60 final size:60
Alignment explanation
Indices: 980130--980271 Score: 169
Period size: 60 Copynumber: 2.4 Consensus size: 60
980120 GTTTGGGGAC
* * *
980130 CAATTTAGAATGAGAGTCATAGTTTGGGGATGAAATTAGAATGTTCAAAAGTTTAAGAAT
1 CAATTTAGAATGAGAATCATAGATTAGGGATGAAATTAGAATGTTCAAAAGTTTAAGAAT
** * * * * *
980190 TTATTTAGAATGAGAATCATAGATTAGGGATGAAGTTGGAATGTTTAAAGGTTTAAGGAT
1 CAATTTAGAATGAGAATCATAGATTAGGGATGAAATTAGAATGTTCAAAAGTTTAAGAAT
*
980250 CAATTT-GAAATGAGGATCATAG
1 CAATTTAG-AATGAGAATCATAG
980272 TTTGAGGACA
Statistics
Matches: 68, Mismatches: 13, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
59 1 0.01
60 67 0.99
ACGTcount: A:0.39, C:0.04, G:0.25, T:0.32
Consensus pattern (60 bp):
CAATTTAGAATGAGAATCATAGATTAGGGATGAAATTAGAATGTTCAAAAGTTTAAGAAT
Found at i:982873 original size:81 final size:80
Alignment explanation
Indices: 982721--982883 Score: 209
Period size: 81 Copynumber: 2.0 Consensus size: 80
982711 TTATTATTTT
* * * * *
982721 TTTAACATTTCCGGTAAAAATTACCTAAAACATTATTATTTCTACAAAAAATGTTATTCTTGGGC
1 TTTAACATATCCGGTAAAAATTACCTAAAACATTATTATTTCTACAAAAAATGTTAATATTAGAC
*
982786 ACTTTACCGGAAATG
66 ACTTTACCGAAAATG
* * ***
982801 TTTAACATATCCGGTAAAGAGTTACCTAAAACATTATTTTTTCTACCGGAAATGTTAATATTAGA
1 TTTAACATATCCGGTAAA-AATTACCTAAAACATTATTATTTCTACAAAAAATGTTAATATTAGA
*
982866 CATTTTACCGAAAATG
65 CACTTTACCGAAAATG
982882 TT
1 TT
982884 AAAAAATTAA
Statistics
Matches: 70, Mismatches: 12, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
80 17 0.24
81 53 0.76
ACGTcount: A:0.36, C:0.15, G:0.12, T:0.37
Consensus pattern (80 bp):
TTTAACATATCCGGTAAAAATTACCTAAAACATTATTATTTCTACAAAAAATGTTAATATTAGAC
ACTTTACCGAAAATG
Found at i:982908 original size:20 final size:20
Alignment explanation
Indices: 982883--982920 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
982873 CCGAAAATGT
* *
982883 TAAAAAATTAATGTTTTAGG
1 TAAAAAAATAATATTTTAGG
982903 TAAAAAAATAATATTTTA
1 TAAAAAAATAATATTTTA
982921 AGTATTTTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.00, G:0.08, T:0.39
Consensus pattern (20 bp):
TAAAAAAATAATATTTTAGG
Found at i:983016 original size:22 final size:22
Alignment explanation
Indices: 982991--983041 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
982981 GAAACTACCC
982991 GTTTCTTACAAAACCCAAACAT
1 GTTTCTTACAAAACCCAAACAT
**
983013 GTTTCTTACAAAAGTCAAACAT
1 GTTTCTTACAAAACCCAAACAT
983035 GTTTCTT
1 GTTTCTT
983042 GCAGAAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.35, C:0.22, G:0.08, T:0.35
Consensus pattern (22 bp):
GTTTCTTACAAAACCCAAACAT
Found at i:988124 original size:2 final size:2
Alignment explanation
Indices: 988045--988110 Score: 125
Period size: 2 Copynumber: 33.5 Consensus size: 2
988035 AATATGTGTG
988045 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
988087 TA TA TA TA TA -A TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
988111 GGGTATGTAT
Statistics
Matches: 63, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
1 1 0.02
2 62 0.98
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:988400 original size:21 final size:20
Alignment explanation
Indices: 988376--988445 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 20
988366 AACAGTACAT
988376 TAAAGGAATGAAAGGATGCCA
1 TAAAGGAATGAAAGGATG-CA
*
988397 TAAATGAAATGCATAACGG-TGCA
1 TAAA-GGAATG-A-AA-GGATGCA
*
988420 TTAAAGGCATGAAAGGATGTCA
1 -TAAAGGAATGAAAGGATG-CA
988442 TAAA
1 TAAA
988446 TGAAATACAT
Statistics
Matches: 39, Mismatches: 3, Indels: 14
0.70 0.05 0.25
Matches are distributed among these distances:
20 2 0.05
21 12 0.31
22 8 0.21
23 7 0.18
24 8 0.21
25 2 0.05
ACGTcount: A:0.46, C:0.10, G:0.24, T:0.20
Consensus pattern (20 bp):
TAAAGGAATGAAAGGATGCA
Found at i:988406 original size:45 final size:45
Alignment explanation
Indices: 988331--988738 Score: 595
Period size: 45 Copynumber: 9.1 Consensus size: 45
988321 GGTATAAATG
* * * *
988331 TTAAAGGCATG-AATGATGTCATAAATGAAATGCATAACAGTACA
1 TTAAAGGCATGAAAGGATGCCATAAATGAAATGCATAACGGTGCA
*
988375 TTAAAGGAATGAAAGGATGCCATAAATGAAATGCATAACGGTGCA
1 TTAAAGGCATGAAAGGATGCCATAAATGAAATGCATAACGGTGCA
* *
988420 TTAAAGGCATGAAAGGATGTCATAAATGAAATACATAACGGTGCA
1 TTAAAGGCATGAAAGGATGCCATAAATGAAATGCATAACGGTGCA
* *
988465 TTAAAGGCATGAAAGGATACCATAAATGAAATGTATAACGGTGCA
1 TTAAAGGCATGAAAGGATGCCATAAATGAAATGCATAACGGTGCA
* * *
988510 TTAAAGACATGAAAGGATTCCATAAATGAAATGCATAACGGTGGA
1 TTAAAGGCATGAAAGGATGCCATAAATGAAATGCATAACGGTGCA
* * *
988555 TTAAAGGCATAAAAGGATGCCATAAATGAAATACATAACTGTGCA
1 TTAAAGGCATGAAAGGATGCCATAAATGAAATGCATAACGGTGCA
*
988600 TTAAAGGCATGAAAGGATGCTATAAATGAAATGCATAACGGAT-CA
1 TTAAAGGCATGAAAGGATGCCATAAATGAAATGCATAACGG-TGCA
* * * **
988645 TTAAAGGTATGAAAGGATTCCATAAATGAAATGCATAATGACGCA
1 TTAAAGGCATGAAAGGATGCCATAAATGAAATGCATAACGGTGCA
*
988690 TTAAAGGCATGAAAGGATGCCATAAATGAAATGCATAACGATGCA
1 TTAAAGGCATGAAAGGATGCCATAAATGAAATGCATAACGGTGCA
988735 TTAA
1 TTAA
988739 GGGGGTGTTT
Statistics
Matches: 325, Mismatches: 36, Indels: 5
0.89 0.10 0.01
Matches are distributed among these distances:
44 10 0.03
45 314 0.97
46 1 0.00
ACGTcount: A:0.45, C:0.12, G:0.21, T:0.23
Consensus pattern (45 bp):
TTAAAGGCATGAAAGGATGCCATAAATGAAATGCATAACGGTGCA
Found at i:989377 original size:20 final size:20
Alignment explanation
Indices: 989341--989378 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
989331 ATCCTATTCC
**
989341 CTGGTAATCTTTTATTCCCA
1 CTGGTAATCTTACATTCCCA
989361 CTGGTAATCTTACATTCC
1 CTGGTAATCTTACATTCC
989379 GTGAACCAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.21, C:0.26, G:0.11, T:0.42
Consensus pattern (20 bp):
CTGGTAATCTTACATTCCCA
Found at i:989464 original size:45 final size:45
Alignment explanation
Indices: 989400--989678 Score: 468
Period size: 45 Copynumber: 6.2 Consensus size: 45
989390 GCACCATAAT
* * *
989400 GGCATTAAAGGATGCCATAAATGAAATGTATAACGGAGCATTAAA
1 GGCATGAAAGGATGCCATAAATGAAATGCATAACGGTGCATTAAA
*
989445 GGCATGAAAGGATGCCATAAATGAAATGCATAATGGTGCATTAAA
1 GGCATGAAAGGATGCCATAAATGAAATGCATAACGGTGCATTAAA
*
989490 GGCATGAAAGGATGCCATAAATGAAATGCATAATGGTGCATTAAA
1 GGCATGAAAGGATGCCATAAATGAAATGCATAACGGTGCATTAAA
* *
989535 GGCATGAAAGGATGCCATAAATGAAATTCATAATGGTGCATTAAA
1 GGCATGAAAGGATGCCATAAATGAAATGCATAACGGTGCATTAAA
* *
989580 GGCATGAAAGGATGCCATAAATGAAATGCATAACAGTTCATTAAA
1 GGCATGAAAGGATGCCATAAATGAAATGCATAACGGTGCATTAAA
*
989625 GGCATGAAAGGATGCCATAAATGAAATGCATAACTGTGCATTAAA
1 GGCATGAAAGGATGCCATAAATGAAATGCATAACGGTGCATTAAA
989670 GGCATGAAA
1 GGCATGAAA
989679 TGCATAACTG
Statistics
Matches: 223, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 223 1.00
ACGTcount: A:0.43, C:0.12, G:0.23, T:0.22
Consensus pattern (45 bp):
GGCATGAAAGGATGCCATAAATGAAATGCATAACGGTGCATTAAA
Found at i:989491 original size:36 final size:39
Alignment explanation
Indices: 989448--989913 Score: 177
Period size: 45 Copynumber: 10.8 Consensus size: 39
989438 CATTAAAGGC
989448 ATGAAAGGATGCCATAAATGAAATGCATAATGGTGCATT
1 ATGAAAGGATGCCATAAATGAAATGCATAATGGTGCATT
989487 AAAGGCATGAAAGGATGCCATAAATGAAATGCATAATGGTGCATT
1 ------ATGAAAGGATGCCATAAATGAAATGCATAATGGTGCATT
*
989532 AAAGGCATGAAAGGATGCCATAAATGAAATTCATAATGGTGCATT
1 ------ATGAAAGGATGCCATAAATGAAATGCATAATGGTGCATT
** *
989577 AAAGGCATGAAAGGATGCCATAAATGAAATGCATAACAGTTCATT
1 ------ATGAAAGGATGCCATAAATGAAATGCATAATGGTGCATT
989622 AAAGGCATGAAAGGATGCCATAAATGAAATGCATAACT-GTGCA-T
1 ------ATGAAAGGATGCCATAAATGAAATGCATAA-TGGTGCATT
989666 -T-AAA-G--G-C----ATGAAATGCATAACT-GTGCATT
1 ATGAAAGGATGCCATAAATGAAATGCATAA-TGGTGCATT
* * *
989695 AAAGGCATGAAATGATGCCATAAATGAAATGCATAACGGAGCATT
1 ------ATGAAAGGATGCCATAAATGAAATGCATAATGGTGCATT
* * *
989740 AAAGGCATAAAAGGATTCCATAAATGAAATGCATAACGGTGCATTAATGT
1 ------ATGAAAGGATGCCATAAATGAAATGCATAATGGTGC----AT-T
* *
989790 CATGAAAGGACGCCATAAATGAAATGCATAACGGTGCATT
1 -ATGAAAGGATGCCATAAATGAAATGCATAATGGTGCATT
**
989830 AAAGGCATGAAAGGATGCCATAAATGAAACACATAACT-GTGCATT
1 ------ATGAAAGGATGCCATAAATGAAATGCATAA-TGGTGCATT
* *
989875 AAAGGCATGAAATGATGCCATAATTGAAATGCATAATGG
1 ------ATGAAAGGATGCCATAAATGAAATGCATAATGG
989914 CACATTAAAG
Statistics
Matches: 366, Mismatches: 24, Indels: 62
0.81 0.05 0.14
Matches are distributed among these distances:
28 20 0.05
29 1 0.00
32 1 0.00
33 1 0.00
35 1 0.00
36 4 0.01
37 4 0.01
38 1 0.00
40 2 0.01
41 3 0.01
44 2 0.01
45 323 0.88
49 2 0.01
50 1 0.00
ACGTcount: A:0.43, C:0.13, G:0.22, T:0.23
Consensus pattern (39 bp):
ATGAAAGGATGCCATAAATGAAATGCATAATGGTGCATT
Found at i:989642 original size:135 final size:135
Alignment explanation
Indices: 989400--990038 Score: 559
Period size: 135 Copynumber: 4.9 Consensus size: 135
989390 GCACCATAAT
*
989400 GGCATTAAAGGATGCCATAAATGAAATGTATAACGGAGCATTAAAGGCATGAAAGGATGCCATAA
1 GGCATGAAAGGATGCCATAAATGAAATGTATAACGGAGCATTAAAGGCATGAAAGGATGCCATAA
**
989465 ATGAAATGCATAATGGTGCATTAAAGGCATGAAAGGATGCCATAAATGAAATGCATAA-TGGTGC
66 ATGAAATGCATAACAGTGCATTAAAGGCATGAAAGGATGCCATAAATGAAATGCATAACT-GTGC
989529 ATTAAA
130 ATTAAA
* *
989535 GGCATGAAAGGATGCCATAAATGAAAT-TCATAATGGTGCATTAAAGGCATGAAAGGATGCCATA
1 GGCATGAAAGGATGCCATAAATGAAATGT-ATAACGGAGCATTAAAGGCATGAAAGGATGCCATA
*
989599 AATGAAATGCATAACAGTTCATTAAAGGCATGAAAGGATGCCATAAATGAAATGCATAACTGTGC
65 AATGAAATGCATAACAGTGCATTAAAGGCATGAAAGGATGCCATAAATGAAATGCATAACTGTGC
989664 ATTAAA
130 ATTAAA
* * * * *
989670 GGCATG-AA--ATG-CATAACTG---TGCATTAA-AG-GCATGAAATGATGCCAT-AAATGAAAT
1 GGCATGAAAGGATGCCATAAATGAAATGTA-TAACGGAGCATTAAA-G--G-CATGAAA-G-GAT
* * * * ** ** *
989725 G-CAT-AACG-GA-GCATTAA-AG-GCATAAAAGG-ATTCCATAA--ATGAAATGCAT-AAC-G-
59 GCCATAAATGAAATGCA-TAACAGTGCATTAAAGGCA-T-GA-AAGGATGCCATAAATGAAATGC
*
989778 ------GTGCATTAAT
120 ATAACTGTGCATTAAA
* * * *
989788 GTCATGAAAGGACGCCATAAATGAAATGCATAACGGTGCATTAAAGGCATGAAAGGATGCCATAA
1 GGCATGAAAGGATGCCATAAATGAAATGTATAACGGAGCATTAAAGGCATGAAAGGATGCCATAA
** * * *
989853 ATGAAACACATAACTGTGCATTAAAGGCATGAAATGATGCCATAATTGAAATGCATAA-TG-GCA
66 ATGAAATGCATAACAGTGCATTAAAGGCATGAAAGGATGCCATAAATGAAATGCATAACTGTG--
989916 CATTAAA
129 CATTAAA
* * *** * * *
989923 GGCATGAAAGGATGTCATAAATGAAATATATAACATTGCATTAAAGGCTTGAAATGATGTCATAA
1 GGCATGAAAGGATGCCATAAATGAAATGTATAACGGAGCATTAAAGGCATGAAAGGATGCCATAA
* *
989988 ATGAAATGCATAACGGTGCATTAAAGGCATGAAAGGATGCCCTAAATGAAA
66 ATGAAATGCATAACAGTGCATTAAAGGCATGAAAGGATGCCATAAATGAAA
990039 ATAATGAATA
Statistics
Matches: 404, Mismatches: 57, Indels: 86
0.74 0.10 0.16
Matches are distributed among these distances:
118 14 0.03
119 2 0.00
121 5 0.01
122 14 0.03
123 7 0.02
124 9 0.02
125 11 0.03
126 26 0.06
127 26 0.06
128 11 0.03
129 9 0.02
130 7 0.02
131 14 0.03
132 6 0.01
133 1 0.00
134 4 0.01
135 237 0.59
136 1 0.00
ACGTcount: A:0.43, C:0.13, G:0.22, T:0.23
Consensus pattern (135 bp):
GGCATGAAAGGATGCCATAAATGAAATGTATAACGGAGCATTAAAGGCATGAAAGGATGCCATAA
ATGAAATGCATAACAGTGCATTAAAGGCATGAAAGGATGCCATAAATGAAATGCATAACTGTGCA
TTAAA
Found at i:989677 original size:28 final size:28
Alignment explanation
Indices: 989645--989708 Score: 128
Period size: 28 Copynumber: 2.3 Consensus size: 28
989635 GATGCCATAA
989645 ATGAAATGCATAACTGTGCATTAAAGGC
1 ATGAAATGCATAACTGTGCATTAAAGGC
989673 ATGAAATGCATAACTGTGCATTAAAGGC
1 ATGAAATGCATAACTGTGCATTAAAGGC
989701 ATGAAATG
1 ATGAAATG
989709 ATGCCATAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.41, C:0.12, G:0.22, T:0.25
Consensus pattern (28 bp):
ATGAAATGCATAACTGTGCATTAAAGGC
Found at i:989722 original size:45 final size:45
Alignment explanation
Indices: 989673--990038 Score: 507
Period size: 45 Copynumber: 8.1 Consensus size: 45
989663 CATTAAAGGC
* *
989673 ATGAAATGCATAACTGTGCATTAAAGGCATGAAATGATGCCATAA
1 ATGAAATGCATAACGGTGCATTAAAGGCATGAAAGGATGCCATAA
* * *
989718 ATGAAATGCATAACGGAGCATTAAAGGCATAAAAGGATTCCATAA
1 ATGAAATGCATAACGGTGCATTAAAGGCATGAAAGGATGCCATAA
* * *
989763 ATGAAATGCATAACGGTGCATTAATGTCATGAAAGGACGCCATAA
1 ATGAAATGCATAACGGTGCATTAAAGGCATGAAAGGATGCCATAA
989808 ATGAAATGCATAACGGTGCATTAAAGGCATGAAAGGATGCCATAA
1 ATGAAATGCATAACGGTGCATTAAAGGCATGAAAGGATGCCATAA
** * *
989853 ATGAAACACATAACTGTGCATTAAAGGCATGAAATGATGCCATAA
1 ATGAAATGCATAACGGTGCATTAAAGGCATGAAAGGATGCCATAA
* * ** *
989898 TTGAAATGCATAATGGCACATTAAAGGCATGAAAGGATGTCATAA
1 ATGAAATGCATAACGGTGCATTAAAGGCATGAAAGGATGCCATAA
** ** * * *
989943 ATGAAATATATAACATTGCATTAAAGGCTTGAAATGATGTCATAA
1 ATGAAATGCATAACGGTGCATTAAAGGCATGAAAGGATGCCATAA
*
989988 ATGAAATGCATAACGGTGCATTAAAGGCATGAAAGGATGCCCTAA
1 ATGAAATGCATAACGGTGCATTAAAGGCATGAAAGGATGCCATAA
990033 ATGAAA
1 ATGAAA
990039 ATAATGAATA
Statistics
Matches: 276, Mismatches: 45, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 276 1.00
ACGTcount: A:0.43, C:0.13, G:0.21, T:0.23
Consensus pattern (45 bp):
ATGAAATGCATAACGGTGCATTAAAGGCATGAAAGGATGCCATAA
Found at i:989832 original size:208 final size:208
Alignment explanation
Indices: 989465--990038 Score: 745
Period size: 208 Copynumber: 2.7 Consensus size: 208
989455 GATGCCATAA
* *
989465 ATGAAATGCATAATGGTGCATTAAAGGCATGAAAGGATGCCATAAATGAAATGCATAATGGTGCA
1 ATGAAATGCATAATGGTGCATTAAAGGCATGAAAGGATGCCATAAATGAAATGCATAACGGAGCA
* * * *
989530 TTAAAGGCATGAAAGGATGCCATAAATGAAATTCATAATGGTGCATTAAAGGCATGAAAGGATGC
66 TTAAAGGCATAAAAGGATGCCATAAATGAAATGCATAACGGTGCATTAAAGGCATGAAAGGACGC
* **
989595 CATAAATGAAATGCATAACAGTTCATTAAAGGCATGAAAGGATGCCATAAATGAAATGCATAACT
131 CATAAATGAAATGCATAACAGTGCATTAAAGGCATGAAAGGATGCCATAAATGAAACACATAACT
989660 GTGCATTAAAGGC
196 GTGCATTAAAGGC
*
989673 ATGAAATGCATAACT-GTGCATTAAAGGCATGAAATGATGCCATAAATGAAATGCATAACGGAGC
1 ATGAAATGCATAA-TGGTGCATTAAAGGCATGAAAGGATGCCATAAATGAAATGCATAACGGAGC
* * *
989737 ATTAAAGGCATAAAAGGATTCCATAAATGAAATGCATAACGGTGCATTAATGTCATGAAAGGACG
65 ATTAAAGGCATAAAAGGATGCCATAAATGAAATGCATAACGGTGCATTAAAGGCATGAAAGGACG
*
989802 CCATAAATGAAATGCATAACGGTGCATTAAAGGCATGAAAGGATGCCATAAATGAAACACATAAC
130 CCATAAATGAAATGCATAACAGTGCATTAAAGGCATGAAAGGATGCCATAAATGAAACACATAAC
989867 TGTGCATTAAAGGC
195 TGTGCATTAAAGGC
*
989881 ATGAAATGATGCCATAATTGAAATGCATAATGGCACATTAAAGGCATGAAAGGATGTCATAAATG
1 ATG-AA--ATG-CATAA-TG----G-----T-G--CATTAAAGGCATGAAAGGATGCCATAAATG
** *** * * * *
989946 AAATATATAACATTGCATTAAAGGCTTGAAATGATGTCATAAATGAAATGCATAACGGTGCATTA
49 AAATGCATAACGGAGCATTAAAGGCATAAAAGGATGCCATAAATGAAATGCATAACGGTGCATTA
* *
990011 AAGGCATGAAAGGATGCCCTAAATGAAA
114 AAGGCATGAAAGGACGCCATAAATGAAA
990039 ATAATGAATA
Statistics
Matches: 317, Mismatches: 31, Indels: 19
0.86 0.08 0.05
Matches are distributed among these distances:
208 195 0.62
209 3 0.01
211 3 0.01
212 6 0.02
217 1 0.00
222 1 0.00
223 1 0.00
225 107 0.34
ACGTcount: A:0.43, C:0.13, G:0.21, T:0.23
Consensus pattern (208 bp):
ATGAAATGCATAATGGTGCATTAAAGGCATGAAAGGATGCCATAAATGAAATGCATAACGGAGCA
TTAAAGGCATAAAAGGATGCCATAAATGAAATGCATAACGGTGCATTAAAGGCATGAAAGGACGC
CATAAATGAAATGCATAACAGTGCATTAAAGGCATGAAAGGATGCCATAAATGAAACACATAACT
GTGCATTAAAGGC
Found at i:989877 original size:253 final size:252
Alignment explanation
Indices: 989420--989931 Score: 810
Period size: 253 Copynumber: 2.0 Consensus size: 252
989410 GATGCCATAA
* * *
989420 ATGAAATGTATAACGGAGCATTAAAGGCATGAAAGGATGCCATAAATGAAATGCATAATGGTGCA
1 ATGAAATGCATAACGGAGCATTAAAGGCATGAAAGGATGCCATAAATGAAATGCATAACGGAGCA
* * *
989485 TTAAAGGCATGAAAGGATGCCATAAATGAAATGCATAATGGTGCATTAAAGGCATGAAAGGATGC
66 TTAAAGGCATAAAAGGATGCCATAAATGAAATGCATAACGGTGCATTAAAGGCATGAAAGGACGC
* * **
989550 CATAAATGAAATTCATAATGGTGCATTAAAGGCATGAAAGGATGCCATAAATGAAATGCATAACA
131 CATAAATGAAATGCATAACGGTGCATTAAAGGCATGAAAGGATGCCATAAATGAAACACATAACA
*
989615 GTTCATTAAAGGCATGAAAGGATGCCATAAATGAAATGCATAACTGTG-CATTAAAGGC
196 GTGCATTAAAGGCATGAAAGGATGCCATAAATGAAATGCATAA-TG-GACATTAAAGGC
* * *
989673 ATGAAATGCATAACTGTGCATTAAAGGCATGAAATGATGCCATAAATGAAATGCATAACGGAGCA
1 ATGAAATGCATAACGGAGCATTAAAGGCATGAAAGGATGCCATAAATGAAATGCATAACGGAGCA
* * *
989738 TTAAAGGCATAAAAGGATTCCATAAATGAAATGCATAACGGTGCATTAATGTCATGAAAGGACGC
66 TTAAAGGCATAAAAGGATGCCATAAATGAAATGCATAACGGTGCATTAAAGGCATGAAAGGACGC
*
989803 CATAAATGAAATGCATAACGGTGCATTAAAGGCATGAAAGGATGCCATAAATGAAACACATAACT
131 CATAAATGAAATGCATAACGGTGCATTAAAGGCATGAAAGGATGCCATAAATGAAACACATAACA
* *
989868 GTGCATTAAAGGCATGAAATGATGCCATAATTGAAATGCATAATGGCACATTAAAGGC
196 GTGCATTAAAGGCATGAAAGGATGCCATAAATGAAATGCATAATGG-ACATTAAAGGC
989926 ATGAAA
1 ATGAAA
989932 GGATGTCATA
Statistics
Matches: 237, Mismatches: 20, Indels: 4
0.91 0.08 0.02
Matches are distributed among these distances:
251 1 0.00
252 2 0.01
253 234 0.99
ACGTcount: A:0.43, C:0.13, G:0.22, T:0.22
Consensus pattern (252 bp):
ATGAAATGCATAACGGAGCATTAAAGGCATGAAAGGATGCCATAAATGAAATGCATAACGGAGCA
TTAAAGGCATAAAAGGATGCCATAAATGAAATGCATAACGGTGCATTAAAGGCATGAAAGGACGC
CATAAATGAAATGCATAACGGTGCATTAAAGGCATGAAAGGATGCCATAAATGAAACACATAACA
GTGCATTAAAGGCATGAAAGGATGCCATAAATGAAATGCATAATGGACATTAAAGGC
Found at i:992263 original size:84 final size:83
Alignment explanation
Indices: 992117--992272 Score: 226
Period size: 84 Copynumber: 1.9 Consensus size: 83
992107 GAGTGCATCG
* *
992117 ATGCATAAAATGCATTCGATGTTTCAAAATAGCCTAAGTGCATCGATGCATGGCTGGTGCATCGA
1 ATGCATAAAATGCATTCGATGTTTCAAAATACCCTAAGTGCATCGATACATGGCTGGTGCATCGA
992182 TGCATGACTGATTTATCA
66 TGCATGACTGATTTATCA
* * *
992200 ATGCATCAAATGCATTCGATGTTTTCATAAA-ACCCTGAGTGCATCGATACATGG-TATGTGCAT
1 ATGCATAAAATGCATTCGATG-TTTCA-AAATACCCTAAGTGCATCGATACATGGCT-GGTGCAT
992263 CGATGCATGA
63 CGATGCATGA
992273 AATGCATTCG
Statistics
Matches: 65, Mismatches: 5, Indels: 5
0.87 0.07 0.07
Matches are distributed among these distances:
83 21 0.32
84 41 0.63
85 3 0.05
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (83 bp):
ATGCATAAAATGCATTCGATGTTTCAAAATACCCTAAGTGCATCGATACATGGCTGGTGCATCGA
TGCATGACTGATTTATCA
Found at i:992564 original size:18 final size:18
Alignment explanation
Indices: 992543--992579 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
992533 ATTTTCTTTG
992543 AAAATAAAATTTGAAATC
1 AAAATAAAATTTGAAATC
*
992561 AAAATCAAATTTGAAATC
1 AAAATAAAATTTGAAATC
992579 A
1 A
992580 CTCCCCCTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.59, C:0.08, G:0.05, T:0.27
Consensus pattern (18 bp):
AAAATAAAATTTGAAATC
Found at i:994883 original size:23 final size:22
Alignment explanation
Indices: 994855--994935 Score: 101
Period size: 23 Copynumber: 3.6 Consensus size: 22
994845 GCATGGATTT
994855 ATGCATCGATGCACATTCAAGG
1 ATGCATCGATGCACATTCAAGG
* *
994877 CATGCATCGGTGCACCTTCAAGG
1 -ATGCATCGATGCACATTCAAGG
* *
994900 -TGTATCGATGCACATACAAGGG
1 ATGCATCGATGCACATTCAA-GG
994922 ATGCATCGATGCAC
1 ATGCATCGATGCAC
994936 TGTTAAGTGT
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
21 15 0.31
22 2 0.04
23 32 0.65
ACGTcount: A:0.28, C:0.25, G:0.25, T:0.22
Consensus pattern (22 bp):
ATGCATCGATGCACATTCAAGG
Found at i:994926 original size:44 final size:43
Alignment explanation
Indices: 994859--994954 Score: 131
Period size: 44 Copynumber: 2.2 Consensus size: 43
994849 GGATTTATGC
* *
994859 ATCGATGCACATTCAAGGCATGCATCGGTGCACCT-TCAAGGTGT
1 ATCGATGCACATACAAGGCATGCATCGATGCA-CTGTCAA-GTGT
* *
994903 ATCGATGCACATACAAGGGATGCATCGATGCACTGTTAAGTGT
1 ATCGATGCACATACAAGGCATGCATCGATGCACTGTCAAGTGT
994946 ATCGATGCA
1 ATCGATGCA
994955 TGAAGCACAA
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
43 15 0.32
44 32 0.68
ACGTcount: A:0.28, C:0.22, G:0.25, T:0.25
Consensus pattern (43 bp):
ATCGATGCACATACAAGGCATGCATCGATGCACTGTCAAGTGT
Found at i:1000886 original size:65 final size:65
Alignment explanation
Indices: 1000746--1000954 Score: 241
Period size: 65 Copynumber: 3.2 Consensus size: 65
1000736 TGTACTAAGA
* *
1000746 GTGCATCGATGCATAAAATGCATTCGATG-TTTAAAAATAGCATGAGTGCATCGATGCATGGCTG
1 GTGCATCGATGCATCAAATGCATTCGATGTTTTAAAAATACCATGAGTGCATCGATGCATGGCTG
* *
1000810 GTGCATCGATGCATCAAATGCATTCGATGTTTTCATAAA-ACCCTGAGTGCATCGATGCATGG-T
1 GTGCATCGATGCATCAAATGCATTCGATGTTTT-AAAAATACCATGAGTGCATCGATGCATGGCT
*
1000873 AT
65 -G
* ** * *
1000875 GTGCATCGATGCATCAAATGCATTCGATG-TTCAATTTATTCCATG-GTGCATC-ATGCATGGAT
1 GTGCATCGATGCATCAAATGCATTCGATGTTTTAA-AAATACCATGAGTGCATCGATGCATGG-C
1000937 TG
64 TG
*
1000939 GTGCATCGGTGCATCA
1 GTGCATCGATGCATCA
1000955 CTTTGAAAAA
Statistics
Matches: 125, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
63 9 0.07
64 54 0.43
65 58 0.46
66 4 0.03
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (65 bp):
GTGCATCGATGCATCAAATGCATTCGATGTTTTAAAAATACCATGAGTGCATCGATGCATGGCTG
Found at i:1004909 original size:56 final size:56
Alignment explanation
Indices: 1004843--1004949 Score: 162
Period size: 56 Copynumber: 1.9 Consensus size: 56
1004833 GGACACTTTG
** * *
1004843 TGTGCAAAAACTAAGGAATTTATAATAAGTTTATGAATTT-CTATATGGGCACTGTT
1 TGTGCAAAAACTAAAAAATTCATAATAAATTTATGAATTTCCT-TATGGGCACTGTT
1004899 TGTGCAAAAACTAAAAAATTCATAATAAATTTATGAATTTCCTTATGGGCA
1 TGTGCAAAAACTAAAAAATTCATAATAAATTTATGAATTTCCTTATGGGCA
1004950 ATGTGTGTAC
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
56 44 0.96
57 2 0.04
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.36
Consensus pattern (56 bp):
TGTGCAAAAACTAAAAAATTCATAATAAATTTATGAATTTCCTTATGGGCACTGTT
Found at i:1005109 original size:45 final size:45
Alignment explanation
Indices: 1005045--1005731 Score: 924
Period size: 45 Copynumber: 15.3 Consensus size: 45
1005035 AAAATAAAAG
* * *
1005045 ATTAAAGGCATAAAAGGATGCCATAAGTGAAATGTATAACGGTGC
1 ATTAAAGGCATGAAAGGATGCCATAAATGAAATGCATAACGGTGC
* * *
1005090 ATTAAAGGCATAAAAGGATGCCATAAATAAAATGTATAACGGTGC
1 ATTAAAGGCATGAAAGGATGCCATAAATGAAATGCATAACGGTGC
* * **
1005135 ATTAAAGGCATGAAAGGATGTCAGAAATGAAATGCATAATAGTGC
1 ATTAAAGGCATGAAAGGATGCCATAAATGAAATGCATAACGGTGC
* * *
1005180 ATTAAAGGCATGAAATGATGCCTTAAATTAAATGCATAACGGTGC
1 ATTAAAGGCATGAAAGGATGCCATAAATGAAATGCATAACGGTGC
* * *
1005225 ATTAAAGGCATGAAAGGATACCATAAATGAAATACATAAAGGTGC
1 ATTAAAGGCATGAAAGGATGCCATAAATGAAATGCATAACGGTGC
*
1005270 ATTAAAGGCATGAAAGGATGCCATAAATGAAATGCATAACGGTAC
1 ATTAAAGGCATGAAAGGATGCCATAAATGAAATGCATAACGGTGC
* * * *
1005315 ATTAATGGAATGAAATGATGCCATAAATAAAATGCATAACGGTGC
1 ATTAAAGGCATGAAAGGATGCCATAAATGAAATGCATAACGGTGC
* * * *
1005360 ATTAAAGGTATGAAATGATGCCATAAATGAAATGCATAATGTTGC
1 ATTAAAGGCATGAAAGGATGCCATAAATGAAATGCATAACGGTGC
*
1005405 ATTAAAGGCATGAAAGGATGCCATAAATGAAATGCATAATGGTGC
1 ATTAAAGGCATGAAAGGATGCCATAAATGAAATGCATAACGGTGC
* * * * *
1005450 ATTAGAGGGATGAAACGATGTCATAAATGAAATACATAACGGTGC
1 ATTAAAGGCATGAAAGGATGCCATAAATGAAATGCATAACGGTGC
* * * * *
1005495 ATTAATGACATGAAAGGATGTCATAAATGAAATGTATAACAGTGC
1 ATTAAAGGCATGAAAGGATGCCATAAATGAAATGCATAACGGTGC
*
1005540 ATTAAAGGCATGAAAGGATACCATAAATGAAATGCATAACGGTGC
1 ATTAAAGGCATGAAAGGATGCCATAAATGAAATGCATAACGGTGC
* * **
1005585 ATTAAAGCCATGAAGGGATGCCATAAATGAAATGCATAACGGTTT
1 ATTAAAGGCATGAAAGGATGCCATAAATGAAATGCATAACGGTGC
*
1005630 ACTAAAGGCATGAAAGGATGCCATAAATGAAATGCATAACGGTGC
1 ATTAAAGGCATGAAAGGATGCCATAAATGAAATGCATAACGGTGC
* *** * * **
1005675 ATTAAAGACATGAAAGGATATTATAATTGAAATGTATAAAAGTGC
1 ATTAAAGGCATGAAAGGATGCCATAAATGAAATGCATAACGGTGC
1005720 ATTAAAGGCATG
1 ATTAAAGGCATG
1005732 CATAACGGTG
Statistics
Matches: 563, Mismatches: 79, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 563 1.00
ACGTcount: A:0.44, C:0.11, G:0.22, T:0.23
Consensus pattern (45 bp):
ATTAAAGGCATGAAAGGATGCCATAAATGAAATGCATAACGGTGC
Found at i:1005386 original size:21 final size:21
Alignment explanation
Indices: 1005321--1005431 Score: 55
Period size: 24 Copynumber: 5.0 Consensus size: 21
1005311 GTACATTAAT
1005321 GGAATGAAATGATGCCATAAA
1 GGAATGAAATGATGCCATAAA
** * *
1005342 TAAAATGCATAACGGTG-CATTAAA
1 -GGAATG-A-AATGATGCCA-TAAA
*
1005366 GGTATGAAATGATGCCATAAA
1 GGAATGAAATGATGCCATAAA
* *
1005387 TGAAATGCATAATGTTG-CATTAAA
1 -GGAATG-A-AATGATGCCA-TAAA
* *
1005411 GGCATGAAAGGATGCCATAAA
1 GGAATGAAATGATGCCATAAA
1005432 TGAAATGCAT
Statistics
Matches: 64, Mismatches: 16, Indels: 19
0.65 0.16 0.19
Matches are distributed among these distances:
21 18 0.28
22 14 0.22
23 13 0.20
24 19 0.30
ACGTcount: A:0.44, C:0.11, G:0.22, T:0.23
Consensus pattern (21 bp):
GGAATGAAATGATGCCATAAA
Found at i:1016925 original size:22 final size:22
Alignment explanation
Indices: 1016899--1016940 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
1016889 CTGGAAGGGG
1016899 GTATCGATACCATAGTAGGGTA
1 GTATCGATACCATAGTAGGGTA
*
1016921 GTATCGATACCATGGTAGGG
1 GTATCGATACCATAGTAGGG
1016941 GTGTCGATAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.29, C:0.14, G:0.31, T:0.26
Consensus pattern (22 bp):
GTATCGATACCATAGTAGGGTA
Found at i:1016949 original size:20 final size:20
Alignment explanation
Indices: 1016896--1016950 Score: 74
Period size: 22 Copynumber: 2.6 Consensus size: 20
1016886 GATCTGGAAG
1016896 GGGGTATCGATACCATAGTA
1 GGGGTATCGATACCATAGTA
*
1016916 GGGTAGTATCGATACCATGGTA
1 GGG--GTATCGATACCATAGTA
*
1016938 GGGGTGTCGATAC
1 GGGGTATCGATAC
1016951 TAAAAGGTCA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
20 12 0.39
22 19 0.61
ACGTcount: A:0.25, C:0.15, G:0.35, T:0.25
Consensus pattern (20 bp):
GGGGTATCGATACCATAGTA
Found at i:1017463 original size:79 final size:78
Alignment explanation
Indices: 1017332--1017635 Score: 414
Period size: 79 Copynumber: 3.9 Consensus size: 78
1017322 TGAATAAAAG
* *
1017332 AATAATGCATATGGGTGCATTAGTGGCAAGAAAAGATGCCCTAGTTGATATGTATATGGGTACAT
1 AATAATGCATATGGGTGCATTAGTGGCATGAAAAGATG-CCTAGCTGATATGTATATGGGTACAT
1017397 TATCGGCATAACAA
65 TATCGGCATAACAA
*
1017411 AATAATGCATATGGGTGCATTAGTGGCATGAAAAGATGCCTTAGCTGATATGTATATGAGTACAT
1 AATAATGCATATGGGTGCATTAGTGGCATGAAAAGATGCC-TAGCTGATATGTATATGGGTACAT
*
1017476 TATCGGCATAACAG
65 TATCGGCATAACAA
* * *
1017490 AATAATGCATATAGGTGCATTAGTGGCATGAAAGGATG-CTAGCTGATATGAATATGGGTACATT
1 AATAATGCATATGGGTGCATTAGTGGCATGAAAAGATGCCTAGCTGATATGTATATGGGTACATT
* *
1017554 ATCGACATAACAT
66 ATCGGCATAACAA
* * * * * * *
1017567 AATAATGCATATGGGTACATTATTGGCAT-AAAAGGATGCCAAAGTTGAAATGCATATGGGTGCA
1 AATAATGCATATGGGTGCATTAGTGGCATGAAAA-GATGCC-TAGCTGATATGTATATGGGTACA
1017631 TTATC
64 TTATC
1017636 CACATAAAAG
Statistics
Matches: 202, Mismatches: 19, Indels: 8
0.88 0.08 0.03
Matches are distributed among these distances:
76 3 0.01
77 64 0.32
78 4 0.02
79 131 0.65
ACGTcount: A:0.36, C:0.12, G:0.24, T:0.29
Consensus pattern (78 bp):
AATAATGCATATGGGTGCATTAGTGGCATGAAAAGATGCCTAGCTGATATGTATATGGGTACATT
ATCGGCATAACAA
Found at i:1017624 original size:156 final size:157
Alignment explanation
Indices: 1017325--1017645 Score: 439
Period size: 156 Copynumber: 2.0 Consensus size: 157
1017315 AAACTAATGA
* * *
1017325 ATAAAAGAATAATGCATATGGGTGCATTAGTGGCAAGAAAAGATGCCCTAGTTGATATGTATATG
1 ATAAAAGAATAATGCATATAGGTGCATTAGTGGCAAGAAAAGATG-CCTAGCTGATATGAATATG
* * **
1017390 GGTACATTATCGGCATAACAAAATAATGCATATGGGTGCATTAGTGGCATGAAAAGATGCCTTAG
65 GGTACATTATCGACATAACAAAATAATGCATATGGGTACATTAGTGGCATGAAAAGATGCCAAAG
* *
1017455 CTGATATGTATATGAGTACATTATCGGC
130 CTGAAATGCATATGAGTACATTATCGGC
* * *
1017483 ATAACAGAATAATGCATATAGGTGCATTAGTGGCATGAAAGGATG-CTAGCTGATATGAATATGG
1 ATAAAAGAATAATGCATATAGGTGCATTAGTGGCAAGAAAAGATGCCTAGCTGATATGAATATGG
* *
1017547 GTACATTATCGACATAACATAATAATGCATATGGGTACATTATTGGCAT-AAAAGGATGCCAAAG
66 GTACATTATCGACATAACAAAATAATGCATATGGGTACATTAGTGGCATGAAAA-GATGCCAAAG
* * * **
1017611 TTGAAATGCATATGGGTGCATTATCCAC
130 CTGAAATGCATATGAGTACATTATCGGC
1017639 ATAAAAG
1 ATAAAAG
1017646 TATGCTATAA
Statistics
Matches: 142, Mismatches: 20, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
155 4 0.03
156 97 0.68
158 41 0.29
ACGTcount: A:0.37, C:0.12, G:0.23, T:0.28
Consensus pattern (157 bp):
ATAAAAGAATAATGCATATAGGTGCATTAGTGGCAAGAAAAGATGCCTAGCTGATATGAATATGG
GTACATTATCGACATAACAAAATAATGCATATGGGTACATTAGTGGCATGAAAAGATGCCAAAGC
TGAAATGCATATGAGTACATTATCGGC
Found at i:1018157 original size:81 final size:81
Alignment explanation
Indices: 1018039--1018212 Score: 213
Period size: 81 Copynumber: 2.1 Consensus size: 81
1018029 TATTCCAAAA
* * * * *
1018039 TAAAAGATGTAATGGCCTAGCTGTGTAATTGAAAGAAATGTGTAAATTATGTCAGTTAGATGAAT
1 TAAAAGA-ATAATGGCCTAACTGTGCAATTGAAAGAAAGGTGTAAATTATGTCAGTTAGATGAAG
**
1018104 AATTAAGTACTGTTGAG
65 AATTAAACACTGTTGAG
* ** * * *
1018121 TAAAAGAATAATGGTCTAACTGTGCAATTGGCAGAAAGGTGTCAATTATGTTAGTTAGATGAAGG
1 TAAAAGAATAATGGCCTAACTGTGCAATTGAAAGAAAGGTGTAAATTATGTCAGTTAGATGAAGA
*
1018186 GTTAAACACTGTTGAG
66 ATTAAACACTGTTGAG
1018202 TAAAAGAATAA
1 TAAAAGAATAA
1018213 AGGAATTTTA
Statistics
Matches: 78, Mismatches: 14, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
81 71 0.91
82 7 0.09
ACGTcount: A:0.39, C:0.07, G:0.24, T:0.30
Consensus pattern (81 bp):
TAAAAGAATAATGGCCTAACTGTGCAATTGAAAGAAAGGTGTAAATTATGTCAGTTAGATGAAGA
ATTAAACACTGTTGAG
Found at i:1019990 original size:2 final size:2
Alignment explanation
Indices: 1019985--1020013 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
1019975 AAATGATGTC
1019985 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1020014 GATTTTATGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1022767 original size:45 final size:43
Alignment explanation
Indices: 1022702--1022839 Score: 116
Period size: 45 Copynumber: 3.3 Consensus size: 43
1022692 AAAATAATGC
*
1022702 ATATGGGTGCATTAGTGGCATGAAAGGATGCCTTATCTGATATGT
1 ATATGGGTACATTAGTGGCATGAAA-GATGCCTTA-CTGATATGT
* * *
1022747 ATATGGGTACATTA-TCGGCAT---A-A---CATAAT-AT-TGC
1 ATATGGGTACATTAGT-GGCATGAAAGATGCCTTACTGATATGT
*
1022781 ATATGGGTGCATTAGTGGCATGAAATGATGCCTTAGCTGATATGT
1 ATATGGGTACATTAGTGGCATGAAA-GATGCCTTA-CTGATATGT
1022826 ATATGGGTACATTA
1 ATATGGGTACATTA
1022840 TCAGCATAAT
Statistics
Matches: 71, Mismatches: 9, Indels: 26
0.67 0.08 0.25
Matches are distributed among these distances:
34 20 0.28
35 3 0.04
36 1 0.01
37 4 0.06
39 1 0.01
40 1 0.01
42 4 0.06
43 1 0.01
44 3 0.04
45 33 0.46
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (43 bp):
ATATGGGTACATTAGTGGCATGAAAGATGCCTTACTGATATGT
Found at i:1022919 original size:79 final size:79
Alignment explanation
Indices: 1022608--1022891 Score: 442
Period size: 79 Copynumber: 3.6 Consensus size: 79
1022598 AAACTAATGA
* * * *
1022608 ATAAAAGAATAATGCACATGGCTGCATTAGTGGCTTGAAAGGATGCCTTAGCTGATATGTATATG
1 ATAACAGAATAATGCATATGGGTGCATTAGTGGCATGAAAGGATGCCTTAGCTGATATGTATATG
*
1022673 GGTACATTATCGGT
66 GGTACATTATCGGC
* * *
1022687 ACAACAAAATAATGCATATGGGTGCATTAGTGGCATGAAAGGATGCCTTATCTGATATGTATATG
1 ATAACAGAATAATGCATATGGGTGCATTAGTGGCATGAAAGGATGCCTTAGCTGATATGTATATG
1022752 GGTACATTATCGGC
66 GGTACATTATCGGC
* * *
1022766 ATAACATAATATTGCATATGGGTGCATTAGTGGCATGAAATGATGCCTTAGCTGATATGTATATG
1 ATAACAGAATAATGCATATGGGTGCATTAGTGGCATGAAAGGATGCCTTAGCTGATATGTATATG
*
1022831 GGTACATTATCAGC
66 GGTACATTATCGGC
* *
1022845 ATAATAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCC
1 ATAACAGAATAATGCATATGGGTGCATTAGTGGCATGAAAGGATGCC
1022892 AAAGTTGAAA
Statistics
Matches: 186, Mismatches: 19, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
79 186 1.00
ACGTcount: A:0.33, C:0.13, G:0.24, T:0.30
Consensus pattern (79 bp):
ATAACAGAATAATGCATATGGGTGCATTAGTGGCATGAAAGGATGCCTTAGCTGATATGTATATG
GGTACATTATCGGC
Found at i:1022927 original size:158 final size:158
Alignment explanation
Indices: 1022615--1022927 Score: 421
Period size: 158 Copynumber: 2.0 Consensus size: 158
1022605 TGAATAAAAG
*
1022615 AATAATGCACATGGCTGCATTAGTGGCTTGAAAGGATGCCTTAGCTGATATGTATATGGGTACAT
1 AATAATGCACATGGCTGCATTAGTGGCATGAAAGGATGCCTTAGCTGATATGTATATGGGTACAT
* * ** *
1022680 TATCGGTACAACAAAATAATGCATATGGGTGCATTAGTGGCATGAAAGGATGCCTTATCTGATAT
66 TATCAGCACAACAAAATAATGCATATGGGTGCATTAGTGGCATGAAAGGATGCCAAATCTGAAAT
** ***
1022745 GTATATGGGTACATTATCGGCATAACAT
131 ACATATGGGTACATTATAAACATAACAT
* * * *
1022773 AATATTGCATATGGGTGCATTAGTGGCATGAAATGATGCCTTAGCTGATATGTATATGGGTACAT
1 AATAATGCACATGGCTGCATTAGTGGCATGAAAGGATGCCTTAGCTGATATGTATATGGGTACAT
* * * *
1022838 TATCAGCATAATAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCAAAGT-TGAAA
66 TATCAGCACAACAAAATAATGCATATGGGTGCATTAGTGGCATGAAAGGATGCCAAA-TCTGAAA
**
1022902 TACATATGGGTGTATTATAAACATAA
130 TACATATGGGTACATTATAAACATAA
1022928 AAGTATGCTA
Statistics
Matches: 133, Mismatches: 21, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
158 132 0.99
159 1 0.01
ACGTcount: A:0.34, C:0.12, G:0.24, T:0.31
Consensus pattern (158 bp):
AATAATGCACATGGCTGCATTAGTGGCATGAAAGGATGCCTTAGCTGATATGTATATGGGTACAT
TATCAGCACAACAAAATAATGCATATGGGTGCATTAGTGGCATGAAAGGATGCCAAATCTGAAAT
ACATATGGGTACATTATAAACATAACAT
Found at i:1024387 original size:36 final size:36
Alignment explanation
Indices: 1024311--1024387 Score: 82
Period size: 36 Copynumber: 2.1 Consensus size: 36
1024301 CGATCTGAAT
* * * ** * *
1024311 GCACTTTGTGTGCATATTGTTATTTCCGATGCGATT
1 GCACTTTATGTGCATATGGTGATTTCAAATGCAATA
*
1024347 GCACTTTATGTGCATATGGTGATTTCAAATGTAATA
1 GCACTTTATGTGCATATGGTGATTTCAAATGCAATA
1024383 GCACT
1 GCACT
1024388 GTGTGTGCTT
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.23, C:0.16, G:0.21, T:0.40
Consensus pattern (36 bp):
GCACTTTATGTGCATATGGTGATTTCAAATGCAATA
Found at i:1028178 original size:10 final size:10
Alignment explanation
Indices: 1028163--1028188 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
1028153 AGGGGTTAGT
1028163 AAAAAAATAA
1 AAAAAAATAA
1028173 AAAAAAATAA
1 AAAAAAATAA
1028183 AAAAAA
1 AAAAAA
1028189 CAAAAGAAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.92, C:0.00, G:0.00, T:0.08
Consensus pattern (10 bp):
AAAAAAATAA
Found at i:1038583 original size:2 final size:2
Alignment explanation
Indices: 1038576--1038608 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
1038566 GTAAACGATA
1038576 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1038609 ATGTAAATTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1048600 original size:30 final size:31
Alignment explanation
Indices: 1048566--1048625 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 31
1048556 AGAAAATTTA
* *
1048566 GGGACC-ATTCTATAATTTTTAAAAAGTTGG
1 GGGACCAATTCGATAATTTTGAAAAAGTTGG
*
1048596 GGGACCAATTCGATAATTTTGGAAAAGTTG
1 GGGACCAATTCGATAATTTTGAAAAAGTTG
1048626 TGAATGGTTG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 6 0.23
31 20 0.77
ACGTcount: A:0.33, C:0.10, G:0.23, T:0.33
Consensus pattern (31 bp):
GGGACCAATTCGATAATTTTGAAAAAGTTGG
Found at i:1049692 original size:38 final size:38
Alignment explanation
Indices: 1049636--1049750 Score: 178
Period size: 38 Copynumber: 3.0 Consensus size: 38
1049626 AACGAGACAT
*
1049636 ATGATAGGTCCTTTGGGACACAGATGACATCCTTCGGG
1 ATGATAGGTCCTTCGGGACACAGATGACATCCTTCGGG
*
1049674 ATGATAGGTCCTTCGGGACACAGATGACATTCTTCGGG
1 ATGATAGGTCCTTCGGGACACAGATGACATCCTTCGGG
* *
1049712 ATGATAGGCCCTTCGGGACACAGAT-ACCGTCCTTCGGG
1 ATGATAGGTCCTTCGGGACACAGATGA-CATCCTTCGGG
1049750 A
1 A
1049751 CATTTATACG
Statistics
Matches: 71, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
37 1 0.01
38 70 0.99
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.24
Consensus pattern (38 bp):
ATGATAGGTCCTTCGGGACACAGATGACATCCTTCGGG
Found at i:1053399 original size:167 final size:169
Alignment explanation
Indices: 1053123--1053458 Score: 658
Period size: 167 Copynumber: 2.0 Consensus size: 169
1053113 GAATGTTTCG
1053123 AAACGTTGAAGAAGATTTTGACAGAAGCTTCAGTTTGGTTCAACCTGAATCTAGAAAGAACTATG
1 AAACGTTGAAGAAGATTTTGACAGAAGCTTCAGTTTGGTTCAACCTGAATCTAGAAAGAACTATG
1053188 CGGTTTATAGCGACGCATATCATAATGGTTTGGGATGTGTGTTGATGCAAGAGGGAAAGG-GGTG
66 CGGTTTATAGCGACGCATATCATAATGGTTTGGGATGTGTGTTGATGCAAGAGGGAAAGGTGGTG
1053252 GCTTATGCGTCGAGATAA-TGAAACCGCATGAGAAGAAT
131 GCTTATGCGTCGAGATAATTGAAACCGCATGAGAAGAAT
1053290 AAACGTTGAAGAAGATTTTGACAGAAGCTTCAGTTTGGTTCAACCTGAATCTAGAAAGAACTATG
1 AAACGTTGAAGAAGATTTTGACAGAAGCTTCAGTTTGGTTCAACCTGAATCTAGAAAGAACTATG
1053355 CGGTTTATAGCGACGCATATCATAATGGTTTGGGATGTGTGTTGATGCAAGAGGGAAAGGTGGTG
66 CGGTTTATAGCGACGCATATCATAATGGTTTGGGATGTGTGTTGATGCAAGAGGGAAAGGTGGTG
1053420 GCTTATGCGTCGAGATAATTGAAACCGCATGAGAAGAAT
131 GCTTATGCGTCGAGATAATTGAAACCGCATGAGAAGAAT
1053459 TATCCAACGC
Statistics
Matches: 167, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
167 125 0.75
168 22 0.13
169 20 0.12
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.27
Consensus pattern (169 bp):
AAACGTTGAAGAAGATTTTGACAGAAGCTTCAGTTTGGTTCAACCTGAATCTAGAAAGAACTATG
CGGTTTATAGCGACGCATATCATAATGGTTTGGGATGTGTGTTGATGCAAGAGGGAAAGGTGGTG
GCTTATGCGTCGAGATAATTGAAACCGCATGAGAAGAAT
Found at i:1060079 original size:29 final size:32
Alignment explanation
Indices: 1060037--1060104 Score: 92
Period size: 30 Copynumber: 2.3 Consensus size: 32
1060027 GATTTAGTGA
*
1060037 GTGA-CAAAGTTATAAA-TTTGTAAAGTTT-G
1 GTGACCAAAGTTATAAACTTTGAAAAGTTTAG
1060066 GTGACCAAAG-TATAAACTTTGAAAAGTTTAG
1 GTGACCAAAGTTATAAACTTTGAAAAGTTTAG
1060097 G-GACCAAA
1 GTGACCAAA
1060105 ATGTAATTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
29 10 0.29
30 23 0.66
31 2 0.06
ACGTcount: A:0.41, C:0.09, G:0.21, T:0.29
Consensus pattern (32 bp):
GTGACCAAAGTTATAAACTTTGAAAAGTTTAG
Found at i:1061512 original size:40 final size:40
Alignment explanation
Indices: 1061461--1061576 Score: 133
Period size: 40 Copynumber: 2.9 Consensus size: 40
1061451 ATTTATTACA
* ** *
1061461 AAAACGCCACTAAATTACAGGACTATTGCGGCGTTTGAAC
1 AAAACGCCACTAAAGTACAACACTATAGCGGCGTTTGAAC
* * * *
1061501 AAAATGCCACTAAAGTACAACTCTATAGCGGCGTTTGTAT
1 AAAACGCCACTAAAGTACAACACTATAGCGGCGTTTGAAC
* * *
1061541 AAAACGCCACTACAGTACGACTCTATAGCGGCGTTT
1 AAAACGCCACTAAAGTACAACACTATAGCGGCGTTT
1061577 ATATATAAAC
Statistics
Matches: 65, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 65 1.00
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.24
Consensus pattern (40 bp):
AAAACGCCACTAAAGTACAACACTATAGCGGCGTTTGAAC
Found at i:1062936 original size:20 final size:22
Alignment explanation
Indices: 1062910--1062963 Score: 67
Period size: 20 Copynumber: 2.5 Consensus size: 22
1062900 AATATCCAAA
1062910 TGGTATCGGTACCAAAGA-GAG
1 TGGTATCGGTACCAAAGAGGAG
* *
1062931 -GGTATCGATACCATAGAGGAG
1 TGGTATCGGTACCAAAGAGGAG
*
1062952 TAGTATCGGTAC
1 TGGTATCGGTAC
1062964 TATAGTGGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
20 15 0.56
21 3 0.11
22 9 0.33
ACGTcount: A:0.31, C:0.15, G:0.31, T:0.22
Consensus pattern (22 bp):
TGGTATCGGTACCAAAGAGGAG
Found at i:1062968 original size:22 final size:23
Alignment explanation
Indices: 1062932--1062977 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
1062922 CAAAGAGAGG
1062932 GTATCGATACCATAG-AGGAGTA
1 GTATCGATACCATAGTAGGAGTA
* * *
1062954 GTATCGGTACTATAGTGGGAGTA
1 GTATCGATACCATAGTAGGAGTA
1062977 G
1 G
1062978 CAATACTATT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 13 0.65
23 7 0.35
ACGTcount: A:0.30, C:0.11, G:0.33, T:0.26
Consensus pattern (23 bp):
GTATCGATACCATAGTAGGAGTA
Found at i:1064201 original size:42 final size:42
Alignment explanation
Indices: 1064023--1064209 Score: 169
Period size: 42 Copynumber: 4.4 Consensus size: 42
1064013 TGGCTCTACA
* *
1064023 TGGTTCTTCGGGACATATATGTGATCCTTTGGAACATATATG
1 TGGTCCTTCGGGACATATATGTGGTCCTTTGGAACATATATG
* * *
1064065 AGGTCCTTTGGGACATATATTTGGTCCTTTGGAACATATATG
1 TGGTCCTTCGGGACATATATGTGGTCCTTTGGAACATATATG
** * * * * * *
1064107 TGGTCCTTATGGACAATTCTATGTAGTCATTCGGGACAATCCTATG
1 TGGTCCTTCGGGAC-A-TATATGTGGTCCTTTGGAAC-AT-ATATG
* * * *
1064153 TAGTCCTTCGTGACATCTATGTGGTCCTTTGTG-ACATCTATG
1 TGGTCCTTCGGGACATATATGTGGTCCTTTG-GAACATATATG
1064195 TGGTCCTTCGGGACA
1 TGGTCCTTCGGGACA
1064210 ATTTATATAG
Statistics
Matches: 116, Mismatches: 24, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
42 66 0.57
43 3 0.03
44 29 0.25
45 4 0.03
46 14 0.12
ACGTcount: A:0.21, C:0.18, G:0.24, T:0.37
Consensus pattern (42 bp):
TGGTCCTTCGGGACATATATGTGGTCCTTTGGAACATATATG
Found at i:1064209 original size:21 final size:21
Alignment explanation
Indices: 1064023--1064209 Score: 149
Period size: 21 Copynumber: 8.7 Consensus size: 21
1064013 TGGCTCTACA
*
1064023 TGGTTCTTCGGGACATATATG
1 TGGTCCTTCGGGACATATATG
* * *
1064044 TGATCCTTTGGAACATATATG
1 TGGTCCTTCGGGACATATATG
* * *
1064065 AGGTCCTTTGGGACATATATT
1 TGGTCCTTCGGGACATATATG
* *
1064086 TGGTCCTTTGGAACATATATG
1 TGGTCCTTCGGGACATATATG
** *
1064107 TGGTCCTTATGGACAATTCTATG
1 TGGTCCTTCGGGAC-A-TATATG
* * *
1064130 TAGTCATTCGGGACAATCCTATG
1 TGGTCCTTCGGGAC-AT-ATATG
* * *
1064153 TAGTCCTTCGTGACATCTATG
1 TGGTCCTTCGGGACATATATG
* * *
1064174 TGGTCCTTTGTGACATCTATG
1 TGGTCCTTCGGGACATATATG
1064195 TGGTCCTTCGGGACA
1 TGGTCCTTCGGGACA
1064210 ATTTATATAG
Statistics
Matches: 138, Mismatches: 25, Indels: 6
0.82 0.15 0.04
Matches are distributed among these distances:
21 100 0.72
22 4 0.03
23 34 0.25
ACGTcount: A:0.21, C:0.18, G:0.24, T:0.37
Consensus pattern (21 bp):
TGGTCCTTCGGGACATATATG
Found at i:1064893 original size:16 final size:17
Alignment explanation
Indices: 1064866--1064899 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
1064856 ATTTTAGTTA
1064866 TTTTGTAAAAGTAAATG
1 TTTTGTAAAAGTAAATG
*
1064883 TTTTG-AAAAGTTAATG
1 TTTTGTAAAAGTAAATG
1064899 T
1 T
1064900 GGCACATCGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.38, C:0.00, G:0.18, T:0.44
Consensus pattern (17 bp):
TTTTGTAAAAGTAAATG
Found at i:1065024 original size:42 final size:41
Alignment explanation
Indices: 1064957--1065065 Score: 130
Period size: 42 Copynumber: 2.7 Consensus size: 41
1064947 AACTATTGCG
* * * *
1064957 GCGTTTG-AAACAAATGCCACTAAAGTAGAATTCTATAGCA
1 GCGTTTGTAAACAAACGCCACGAAAGTACAAGTCTATAGCA
* *
1064997 GCGTTTTTAAACCAAACGCCACGAAAGTACAAGTCTATAGCG
1 GCGTTTGTAAA-CAAACGCCACGAAAGTACAAGTCTATAGCA
* *
1065039 GCGTTTGTAAACAAACGACATGAAAGT
1 GCGTTTGTAAACAAACGCCACGAAAGT
1065066 CTGAGTATTT
Statistics
Matches: 58, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
40 6 0.10
41 17 0.29
42 35 0.60
ACGTcount: A:0.39, C:0.19, G:0.19, T:0.23
Consensus pattern (41 bp):
GCGTTTGTAAACAAACGCCACGAAAGTACAAGTCTATAGCA
Found at i:1067578 original size:15 final size:15
Alignment explanation
Indices: 1067555--1067584 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
1067545 GTTATAATTA
*
1067555 TTGTTACAAAAAAAT
1 TTGTCACAAAAAAAT
1067570 TTGTCACAAAAAAAT
1 TTGTCACAAAAAAAT
1067585 AATGAAACTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.53, C:0.10, G:0.07, T:0.30
Consensus pattern (15 bp):
TTGTCACAAAAAAAT
Found at i:1068690 original size:21 final size:20
Alignment explanation
Indices: 1068652--1068700 Score: 73
Period size: 21 Copynumber: 2.5 Consensus size: 20
1068642 GCGAATATGT
1068652 AAATT-GCATTGCGTTTTCC
1 AAATTCGCATTGCGTTTTCC
*
1068671 AAATTCGCGTTGCGATTTTCC
1 AAATTCGCATTGCG-TTTTCC
1068692 AAATTCGCA
1 AAATTCGCA
1068701 ACGCGAATCT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
19 5 0.19
20 7 0.27
21 14 0.54
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.37
Consensus pattern (20 bp):
AAATTCGCATTGCGTTTTCC
Found at i:1068739 original size:20 final size:20
Alignment explanation
Indices: 1068716--1068758 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
1068706 AATCTGTAAA
1068716 TCGCAACAC-AGAAGTCAAAT
1 TCGCAACACGA-AAGTCAAAT
*
1068736 TCGCAACGCGAAAGTCAAAT
1 TCGCAACACGAAAGTCAAAT
1068756 TCG
1 TCG
1068759 TAACTTGAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 20 0.95
21 1 0.05
ACGTcount: A:0.40, C:0.26, G:0.19, T:0.16
Consensus pattern (20 bp):
TCGCAACACGAAAGTCAAAT
Found at i:1068798 original size:20 final size:21
Alignment explanation
Indices: 1068756--1068845 Score: 130
Period size: 21 Copynumber: 4.4 Consensus size: 21
1068746 AAAGTCAAAT
*
1068756 TCGTAACTTGAATAGTAAAAA
1 TCGTAACGTGAATAGTAAAAA
1068777 TCGTAACGTGAATAGT-AAAA
1 TCGTAACGTGAATAGTAAAAA
*
1068797 TCGCAACGTGAATAGTAAAAA
1 TCGTAACGTGAATAGTAAAAA
*
1068818 TCGTAATGTGAATAGT-AAAA
1 TCGTAACGTGAATAGTAAAAA
*
1068838 TCGCAACG
1 TCGTAACG
1068846 AATATGTATG
Statistics
Matches: 62, Mismatches: 6, Indels: 3
0.87 0.08 0.04
Matches are distributed among these distances:
20 29 0.47
21 33 0.53
ACGTcount: A:0.44, C:0.12, G:0.19, T:0.24
Consensus pattern (21 bp):
TCGTAACGTGAATAGTAAAAA
Found at i:1068821 original size:41 final size:41
Alignment explanation
Indices: 1068764--1068845 Score: 155
Period size: 41 Copynumber: 2.0 Consensus size: 41
1068754 ATTCGTAACT
1068764 TGAATAGTAAAAATCGTAACGTGAATAGTAAAATCGCAACG
1 TGAATAGTAAAAATCGTAACGTGAATAGTAAAATCGCAACG
*
1068805 TGAATAGTAAAAATCGTAATGTGAATAGTAAAATCGCAACG
1 TGAATAGTAAAAATCGTAACGTGAATAGTAAAATCGCAACG
1068846 AATATGTATG
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.46, C:0.11, G:0.20, T:0.23
Consensus pattern (41 bp):
TGAATAGTAAAAATCGTAACGTGAATAGTAAAATCGCAACG
Found at i:1069223 original size:21 final size:20
Alignment explanation
Indices: 1069199--1069238 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
1069189 GCGATTTTGC
1069199 GATTTTCTAAATTCGCGTTGT
1 GATTTT-TAAATTCGCGTTGT
*
1069220 GATTTTTCAATTCGCGTTG
1 GATTTTTAAATTCGCGTTG
1069239 CAATTTTTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.17, C:0.15, G:0.20, T:0.47
Consensus pattern (20 bp):
GATTTTTAAATTCGCGTTGT
Found at i:1069244 original size:20 final size:21
Alignment explanation
Indices: 1069195--1069260 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 21
1069185 CAACGCGATT
*
1069195 TTGCGATTTTCTA-AATTCGCG
1 TTGCAATTTT-TACAATTCGCG
**
1069216 TTGTGATTTTT-CAATTCGCG
1 TTGCAATTTTTACAATTCGCG
* *
1069236 TTGCAATTTTTACTATTCACG
1 TTGCAATTTTTACAATTCGCG
1069257 TTGC
1 TTGC
1069261 GAAATTGGAA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
20 18 0.47
21 20 0.53
ACGTcount: A:0.18, C:0.18, G:0.17, T:0.47
Consensus pattern (21 bp):
TTGCAATTTTTACAATTCGCG
Found at i:1069253 original size:21 final size:20
Alignment explanation
Indices: 1069208--1069260 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
1069198 CGATTTTCTA
**
1069208 AATTCGCGTTGTGATTTTTC
1 AATTCGCGTTGCAATTTTTC
1069228 AATTCGCGTTGCAATTTTTAC
1 AATTCGCGTTGCAATTTTT-C
* *
1069249 TATTCACGTTGC
1 AATTCGCGTTGC
1069261 GAAATTGGAA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 17 0.61
21 11 0.39
ACGTcount: A:0.19, C:0.19, G:0.17, T:0.45
Consensus pattern (20 bp):
AATTCGCGTTGCAATTTTTC
Found at i:1073912 original size:34 final size:32
Alignment explanation
Indices: 1073874--1073948 Score: 98
Period size: 34 Copynumber: 2.2 Consensus size: 32
1073864 GTAATAAACA
1073874 AAATTAAGCAAAATAAATTAACAA-AAAGTCCAAC
1 AAATTAA-CAAAATAAATTAA-AATAAA-TCCAAC
1073908 AAATTTAACAAAATAAATTAAAATAAATCCAAC
1 AAA-TTAACAAAATAAATTAAAATAAATCCAAC
1073941 AATATTAA
1 AA-ATTAA
1073949 TGAATTAAAG
Statistics
Matches: 38, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
33 14 0.37
34 20 0.53
35 4 0.11
ACGTcount: A:0.63, C:0.12, G:0.03, T:0.23
Consensus pattern (32 bp):
AAATTAACAAAATAAATTAAAATAAATCCAAC
Found at i:1074005 original size:12 final size:12
Alignment explanation
Indices: 1073978--1074023 Score: 56
Period size: 13 Copynumber: 3.7 Consensus size: 12
1073968 AATGATAAAT
1073978 AATAAAAAATTAC
1 AATAAAAAA-TAC
*
1073991 AATAAAAAATCC
1 AATAAAAAATAC
*
1074003 AATAAACAACTAC
1 AATAAA-AAATAC
1074016 AATAAAAA
1 AATAAAAA
1074024 GTACTAAATA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
12 10 0.34
13 19 0.66
ACGTcount: A:0.70, C:0.13, G:0.00, T:0.17
Consensus pattern (12 bp):
AATAAAAAATAC
Found at i:1076237 original size:9 final size:9
Alignment explanation
Indices: 1076223--1076256 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
1076213 TAAGTAAAAT
1076223 ATTAAATAA
1 ATTAAATAA
1076232 ATTAAAT-A
1 ATTAAATAA
*
1076240 CTTAAATAA
1 ATTAAATAA
1076249 ATTAAATA
1 ATTAAATA
1076257 CAAAATATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
8 7 0.32
9 15 0.68
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (9 bp):
ATTAAATAA
Found at i:1076255 original size:17 final size:17
Alignment explanation
Indices: 1076219--1076257 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
1076209 TAATTAAGTA
1076219 AAATA-TTAAATAAATT
1 AAATACTTAAATAAATT
1076235 AAATACTTAAATAAATT
1 AAATACTTAAATAAATT
1076252 AAATAC
1 AAATAC
1076258 AAAATATTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 5 0.23
17 17 0.77
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (17 bp):
AAATACTTAAATAAATT
Found at i:1076983 original size:23 final size:23
Alignment explanation
Indices: 1076948--1077006 Score: 82
Period size: 23 Copynumber: 2.6 Consensus size: 23
1076938 ATCAAGCACA
* *
1076948 ATAACATATTAGGTAGCGCTTAT
1 ATAATATAATAGGTAGCGCTTAT
*
1076971 ATAATATAATAGGTTGCGCTTAT
1 ATAATATAATAGGTAGCGCTTAT
*
1076994 ATAATAAAATAGG
1 ATAATATAATAGG
1077007 CATTTAACCG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.41, C:0.08, G:0.17, T:0.34
Consensus pattern (23 bp):
ATAATATAATAGGTAGCGCTTAT
Found at i:1077068 original size:87 final size:87
Alignment explanation
Indices: 1076920--1077082 Score: 272
Period size: 87 Copynumber: 1.9 Consensus size: 87
1076910 TATATTATAT
* *
1076920 CATTTAACCGAAAATATTATCAAGCACAATAACATATTAGGTAGCGCTTATATAATATAATAGGT
1 CATTTAACCGAAAATATTATCAAGCACAATAACAAATTAGGTAGCGCTTATATAATATAATAAGT
*
1076985 TGCGCTTATATAATAAAATAGG
66 AGCGCTTATATAATAAAATAGG
* * *
1077007 CATTTAACCGGAAATATTATCAAGTACAATAACAAATTAGGTAGCGCTTATATAATGTAATAAGT
1 CATTTAACCGAAAATATTATCAAGCACAATAACAAATTAGGTAGCGCTTATATAATATAATAAGT
1077072 AGCGCTTATAT
66 AGCGCTTATAT
1077083 TGACATATTT
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
87 70 1.00
ACGTcount: A:0.42, C:0.13, G:0.14, T:0.31
Consensus pattern (87 bp):
CATTTAACCGAAAATATTATCAAGCACAATAACAAATTAGGTAGCGCTTATATAATATAATAAGT
AGCGCTTATATAATAAAATAGG
Found at i:1077467 original size:198 final size:197
Alignment explanation
Indices: 1077101--1077599 Score: 553
Period size: 198 Copynumber: 2.5 Consensus size: 197
1077091 TTTCTCATAA
* * * * * *
1077101 AACCAGTAAATTTAAACCGGTTACATTATAAATTGACCTATTACATTAT-GTATATCGGTTTCGA
1 AACCGGTATATTTTAACCGGTTACATTGTAAATTTACCTATTACATTATAAT-TATCGGTTTCGA
* * * * * *
1077165 TGTTTTTGGGATCGATACAATTTT-AAATGTATCGACACTTTATGCGTGCAACTCTTTTGTGCTT
65 TGATTTTGGGATCGATAC-TTTTTAAAATGTATCGATACTTTATGCGTACAACTCGTTTGTCCTT
* *** * *
1077229 TATTTTGGAAAAAAGTATCGACATGTATTTAAAGAGTGTCGATACATAATG-TAGACCTATT-TG
129 CATTTTGGAAAAAAGTATCGACACAAATTAAAAAAGTGTCGATACATAATGTTA-ACCTATTCT-
*
1077292 CTAATT
192 CTAATG
* * * *
1077298 AACCGGTATATTTTAACTGGTTACATTGTAAATTTACCTGTTACATAATAATTATCGATTTCGAT
1 AACCGGTATATTTTAACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGAT
* * *
1077363 G-TTTCGAGGATCGATACTTTTTACAAATGTATCGATACTTTATGTGTACACCTCGTTTG-CCAT
66 GATTTTG-GGATCGATACTTTTTA-AAATGTATCGATACTTTATGCGTACAACTCGTTTGTCC-T
* *
1077426 TCATTTTGGAAAAATGTATCGACACAAATTAAAAAAGTGTCGATACATATTGTTAACCTATTCTC
128 TCATTTTGGAAAAAAGTATCGACACAAATTAAAAAAGTGTCGATACATAATGTTAACCTATTCTC
*
1077491 TCATG
193 TAATG
* * *
1077496 AACCCGGTATATTTCT-ACCGGTTACATTGGAAATTTACCTATTACATTATAATTATCGGTCTCT
1 AA-CCGGTATATTT-TAACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCG
* *
1077560 TTGATTTTGGGATCGATACTTGTTATAAATGTATCGATAC
64 ATGATTTTGGGATCGATACTTTTTA-AAATGTATCGATAC
1077600 AAAATCTAAT
Statistics
Matches: 253, Mismatches: 39, Indels: 18
0.82 0.13 0.06
Matches are distributed among these distances:
196 8 0.03
197 65 0.26
198 89 0.35
199 86 0.34
200 5 0.02
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.39
Consensus pattern (197 bp):
AACCGGTATATTTTAACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGAT
GATTTTGGGATCGATACTTTTTAAAATGTATCGATACTTTATGCGTACAACTCGTTTGTCCTTCA
TTTTGGAAAAAAGTATCGACACAAATTAAAAAAGTGTCGATACATAATGTTAACCTATTCTCTAA
TG
Found at i:1081280 original size:200 final size:198
Alignment explanation
Indices: 1080878--1081560 Score: 849
Period size: 201 Copynumber: 3.4 Consensus size: 198
1080868 TATTTTTAGG
** * *
1080878 ATCGACACTTTTTCGTGAACTTGTTTGGAAAATTTATTATGGACATAAAGTGTCAACACAAATGT
1 ATCGACACTTTTTCGTGAACTTGTTTGGAAAATACATTATGGACATAAAGTATCGACACAAATGT
* * *
1080943 ATAAAGTATCAATACATTATGTATACC-TTTTTCTTAATAACCGATATGTTTAGACTTGTTACAT
66 ATAAAGTATCGATACATTATGTATACCTTTTTTCTTAATAACCGATATATTTAGAC-GGTTACAT
*
1081007 TGTTATGTTACCTATTACATTATAATTATGTGTTTCGATGTTTTTGGGATCGACACTTGTTATAA
130 TGTTATATTACCTATTACATTATAATTATGTGTTTCGATGTTTTTGGGATCGACACTTGTTATAA
1081072 ATGT
195 ATGT
** *
1081076 ATCGACACTTTTTCGTGAACTTGTTTGGAAAATTTATTATGGACATAAAGTGTCGACACAAATGT
1 ATCGACACTTTTTCGTGAACTTGTTTGGAAAATACATTATGGACATAAAGTATCGACACAAATGT
*
1081141 ATAAAGTATCGATACATTATGTATACCTTTCTTTTTTAATAACCGATATATTTAGATCGGTTACA
66 ATAAAGTATCGATACATTATGTATACCTTT-TTTCTTAATAACCGATATATTTAGA-CGGTTACA
*
1081206 TTGTTATATTACCTATTACATTATAATTATGTGTTTTGATGTTTTTGGGATCGACACTTGTTATA
129 TTGTTATATTACCTATTACATTATAATTATGTGTTTCGATGTTTTTGGGATCGACACTTGTTATA
1081271 AATGT
194 AATGT
* * *
1081276 ATCGACACTTTTTTCGTGCACTTGGTTTGG-AAATACATTCTGGACA-ACATGTATCGACACAAA
1 ATCGACAC-TTTTTCGTGAACTT-GTTTGGAAAATACATTATGGACATA-AAGTATCGACACAAA
* * * * * * * *
1081339 TGAATAAAGTGTCGATACA-TATTGTAGACCTATTTTCTCATAA-AATCGAAAAATTTAAACCGG
63 TGTATAAAGTATCGATACATTA-TGTATACCT-TTTT-TCTTAATAACCGATATATTTAGA-CGG
* * * * *
1081402 TTACATTG-TAAAGTGACCTATTACATTATAGTTACGGGTTTCGATGTTTTTGGGATCGACACTT
124 TTACATTGTTATA-TTACCTATTACATTATAATTATGTGTTTCGATGTTTTTGGGATCGACACTT
*
1081466 GATATAAATGT
188 GTTATAAATGT
* * * *
1081477 GTCGTCACTTATTT-GTGAACTTTTTTTGGTTGGAAAATACATTATGGACACAAAGTATCGACAC
1 ATCGACACTT-TTTCGTGAAC-----TTGTTTGGAAAATACATTATGGACATAAAGTATCGACAC
*
1081541 AAATGTATAAAGTGTCGATA
60 AAATGTATAAAGTATCGATA
1081561 TTTTTGAACT
Statistics
Matches: 430, Mismatches: 37, Indels: 29
0.87 0.07 0.06
Matches are distributed among these distances:
198 90 0.21
199 2 0.00
200 118 0.27
201 155 0.36
202 12 0.03
204 5 0.01
205 47 0.11
206 1 0.00
ACGTcount: A:0.31, C:0.13, G:0.16, T:0.39
Consensus pattern (198 bp):
ATCGACACTTTTTCGTGAACTTGTTTGGAAAATACATTATGGACATAAAGTATCGACACAAATGT
ATAAAGTATCGATACATTATGTATACCTTTTTTCTTAATAACCGATATATTTAGACGGTTACATT
GTTATATTACCTATTACATTATAATTATGTGTTTCGATGTTTTTGGGATCGACACTTGTTATAAA
TGT
Found at i:1082051 original size:24 final size:24
Alignment explanation
Indices: 1081999--1082045 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
1081989 AGTGGAGCCG
*
1081999 AAATTTACATTTAAATTCAAACTA
1 AAATTTAAATTTAAATTCAAACTA
1082023 AAATTTAAATTTAAATTCAAACT
1 AAATTTAAATTTAAATTCAAACT
1082046 CTAATTATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.51, C:0.11, G:0.00, T:0.38
Consensus pattern (24 bp):
AAATTTAAATTTAAATTCAAACTA
Found at i:1082062 original size:24 final size:24
Alignment explanation
Indices: 1081999--1082062 Score: 67
Period size: 24 Copynumber: 2.7 Consensus size: 24
1081989 AGTGGAGCCG
* *
1081999 AAATTTACATTTAAATTCAAACTA
1 AAATTTAAATTGAAATTCAAACTA
* *
1082023 AAATTTAAATTTAAATTCAAACTC
1 AAATTTAAATTGAAATTCAAACTA
*
1082047 TAATTATAAA-TGAAAT
1 AAATT-TAAATTGAAAT
1082063 GAAAATGAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
24 31 0.89
25 4 0.11
ACGTcount: A:0.52, C:0.09, G:0.02, T:0.38
Consensus pattern (24 bp):
AAATTTAAATTGAAATTCAAACTA
Found at i:1084005 original size:198 final size:198
Alignment explanation
Indices: 1083730--1084665 Score: 1432
Period size: 198 Copynumber: 4.7 Consensus size: 198
1083720 TAAATAGGTA
* * *
1083730 TATTTATACCAGTTACATTGCA-AATTTACCTATTACATTATAATTATGGGTCTCGATGTTTTTT
1 TATTTAGACCGGTTAGATTG-ATAATTTACCTATTACATTATAATTATGGGTCTCGATGTTTTTT
* * * *
1083794 GGATTGATACTTTTTATAAATGTATCGACACATTGTGGTGACATTGGTAAGAAAATCATTTTGGA
65 GGATCGATACTTTTTATAAATGTATCGACACATTGTGGTGACCTTGGTAAGGAAATCATTCTGGA
*
1083859 CACAAAGTATCGACACAAATTAAAAAAGTGTCGATACTTCATGTACACCTGTTTTCTCATAAACC
130 CACAAAGTATCGACACAAATTAAAAAAGTGTCGATACTTCATGTACACATGTTTTCTCATAAACC
*
1083924 AGTT
195 AGTG
*
1083928 TAATTAGACCGGTTAGATTGATAATTTACCTATTACATTATAATTATGGGTCTCGATGTTTTTTG
1 TATTTAGACCGGTTAGATTGATAATTTACCTATTACATTATAATTATGGGTCTCGATGTTTTTTG
*
1083993 GATCGATACTTTTTATAAATGTATCGACACATTGCGGTGACCTTGGTAAGGAAATCATTCTGGAC
66 GATCGATACTTTTTATAAATGTATCGACACATTGTGGTGACCTTGGTAAGGAAATCATTCTGGAC
* * ** * *
1084058 ACAAAGTATCGACACAAATTGAAAGAGTGTTAATACTTCATGTACACCTATTTTCTCATAAACC-
131 ACAAAGTATCGACACAAATTAAAAAAGTGTCGATACTTCATGTACACATGTTTTCTCATAAACCA
1084122 GATG
196 G-TG
*
1084126 TATTTAGACCAGTTAGATTGATAATTTACCTATTACATTATAATTATGGGTCTCGATGTTTTTTG
1 TATTTAGACCGGTTAGATTGATAATTTACCTATTACATTATAATTATGGGTCTCGATGTTTTTTG
*
1084191 GATCAATACTTTTTATAAATGTATCGACACATTGTGGTGACCTTGGTAAGGAAATCATTCTGGAC
66 GATCGATACTTTTTATAAATGTATCGACACATTGTGGTGACCTTGGTAAGGAAATCATTCTGGAC
* * * *
1084256 ACAAAGTATCGACATAAATTCAAAATA-TGTTGATACTTCAAGTACACATGTTTTCTCATAAACC
131 ACAAAGTATCGACACAAATT-AAAAAAGTGTCGATACTTCATGTACACATGTTTTCTCATAAACC
*
1084320 GGTG
195 AGTG
* *
1084324 TATTTAGACCGGTTAGATTAATAATTTACCTATTACATTATAATTATGGGTCTCGATGTTTTTGG
1 TATTTAGACCGGTTAGATTGATAATTTACCTATTACATTATAATTATGGGTCTCGATGTTTTTTG
* *
1084389 GATCGATACTTTTTATAAAGGTATCGACACATTATGGTGACCTTGGTAAGGAAATCATTCTGGAC
66 GATCGATACTTTTTATAAATGTATCGACACATTGTGGTGACCTTGGTAAGGAAATCATTCTGGAC
* * *
1084454 ACAAAGTACGGGATCTACACAAATTAAACAAGTGTCGATACTTTATGTACACATGTTTTCTCATA
131 ACAAAGT-----ATCGACACAAATTAAAAAAGTGTCGATACTTCATGTACACATGTTTTCTCATA
*
1084519 AACCAGTA
191 AACCAGTG
*
1084527 TATTTAGACCGATTAGATTGATAATTTACCTATTACATTATAATTATGGGTCTCGATGTTTTTTG
1 TATTTAGACCGGTTAGATTGATAATTTACCTATTACATTATAATTATGGGTCTCGATGTTTTTTG
**
1084592 GATCGATACTTTTTATAAATGTATCGACACATT-TCCATG-CACTTGGTAAGGAAATCATTCTGG
66 GATCGATACTTTTTATAAATGTATCGACACATTGT-GGTGAC-CTTGGTAAGGAAATCATTCTGG
1084655 ACACAAAGTAT
129 ACACAAAGTAT
1084666 ACTTGGAATG
Statistics
Matches: 679, Mismatches: 47, Indels: 24
0.91 0.06 0.03
Matches are distributed among these distances:
197 2 0.00
198 492 0.72
199 5 0.01
202 6 0.01
203 174 0.26
ACGTcount: A:0.32, C:0.15, G:0.16, T:0.37
Consensus pattern (198 bp):
TATTTAGACCGGTTAGATTGATAATTTACCTATTACATTATAATTATGGGTCTCGATGTTTTTTG
GATCGATACTTTTTATAAATGTATCGACACATTGTGGTGACCTTGGTAAGGAAATCATTCTGGAC
ACAAAGTATCGACACAAATTAAAAAAGTGTCGATACTTCATGTACACATGTTTTCTCATAAACCA
GTG
Found at i:1084831 original size:19 final size:19
Alignment explanation
Indices: 1084807--1084856 Score: 73
Period size: 19 Copynumber: 2.6 Consensus size: 19
1084797 TTACATTCAC
* *
1084807 ATACAAAATTATAAATCGT
1 ATACAAAATTAAAAAACGT
*
1084826 ATACAAAATTAAAAAACTT
1 ATACAAAATTAAAAAACGT
1084845 ATACAAAATTAA
1 ATACAAAATTAA
1084857 CCCTACATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.60, C:0.10, G:0.02, T:0.28
Consensus pattern (19 bp):
ATACAAAATTAAAAAACGT
Found at i:1085650 original size:210 final size:210
Alignment explanation
Indices: 1085422--1085806 Score: 745
Period size: 212 Copynumber: 1.8 Consensus size: 210
1085412 TACAGTTCCA
1085422 GATTTTTCATATCCAACACCAAC-ACACCAATGTGAATTATTATAGTTTATTGTGATCATGATCT
1 GATTTTTCATATCCAACACCAACAACACCAATGTGAATTATTATAGTTTATTGTGATCATGATCT
1085486 ACAAAAAATTCACACACAATTTGACAAAATTCAACATTATATATCCAAAAACATCATTTATGCCT
66 ACAAAAAATTCACACACAATTTGACAAAATTCAACATTATATATCCAAAAACATCATTTATGCCT
1085551 ATTTGTATGGTGTCTTACCTTCTCATAGTTGGTGAATTTCATATAGTTAGGCAACATGACTATCA
131 ATTTGTATGGTGTC-TACCTTCTCATAGTTGGTGAATTTCATATAGTTAGGCAACATGACTATCA
1085616 TATACAGTTCCAACAC
195 TATACAGTTCCAACAC
1085632 GATTTTTCATATCCAACACCAACAGACACCAATGTGAATTATTATAGTTTATTGTGATCATGATC
1 GATTTTTCATATCCAACACCAACA-ACACCAATGTGAATTATTATAGTTTATTGTGATCATGATC
1085697 TACAAAAAATTCACACACAATTTGACAAAATTCAACATTATATATCCAAAAACATCATTTATGCC
65 TACAAAAAATTCACACACAATTTGACAAAATTCAACATTATATATCCAAAAACATCATTTATGCC
1085762 TATTTGTATGGTGTCTACCTTCTCATAGTTGGTGAATTTCATATA
130 TATTTGTATGGTGTCTACCTTCTCATAGTTGGTGAATTTCATATA
1085807 ACCCCAAAAG
Statistics
Matches: 173, Mismatches: 0, Indels: 3
0.98 0.00 0.02
Matches are distributed among these distances:
210 23 0.13
211 30 0.17
212 120 0.69
ACGTcount: A:0.36, C:0.19, G:0.10, T:0.35
Consensus pattern (210 bp):
GATTTTTCATATCCAACACCAACAACACCAATGTGAATTATTATAGTTTATTGTGATCATGATCT
ACAAAAAATTCACACACAATTTGACAAAATTCAACATTATATATCCAAAAACATCATTTATGCCT
ATTTGTATGGTGTCTACCTTCTCATAGTTGGTGAATTTCATATAGTTAGGCAACATGACTATCAT
ATACAGTTCCAACAC
Found at i:1086210 original size:17 final size:17
Alignment explanation
Indices: 1086188--1086223 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
1086178 GAATCATTAG
1086188 GATTAATATCTTTTCAT
1 GATTAATATCTTTTCAT
1086205 GATTAATATCTTTTCAT
1 GATTAATATCTTTTCAT
1086222 GA
1 GA
1086224 AATATTTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.31, C:0.11, G:0.08, T:0.50
Consensus pattern (17 bp):
GATTAATATCTTTTCAT
Found at i:1086415 original size:17 final size:18
Alignment explanation
Indices: 1086393--1086430 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
1086383 CTCTCCTCAT
1086393 TTCCTCCATC-TTTCTTC
1 TTCCTCCATCTTTTCTTC
*
1086410 TTCCTCTATCTTTTCTTC
1 TTCCTCCATCTTTTCTTC
1086428 TTC
1 TTC
1086431 AAATTTTCTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 9 0.47
18 10 0.53
ACGTcount: A:0.05, C:0.37, G:0.00, T:0.58
Consensus pattern (18 bp):
TTCCTCCATCTTTTCTTC
Found at i:1086806 original size:15 final size:15
Alignment explanation
Indices: 1086786--1086815 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
1086776 ACTCTGTTTT
1086786 CCCTGACCGTAATCC
1 CCCTGACCGTAATCC
*
1086801 CCCTGACCGTCATCC
1 CCCTGACCGTAATCC
1086816 ACCCCTCCAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.50, G:0.13, T:0.20
Consensus pattern (15 bp):
CCCTGACCGTAATCC
Found at i:1089222 original size:182 final size:182
Alignment explanation
Indices: 1088980--1089626 Score: 861
Period size: 182 Copynumber: 3.6 Consensus size: 182
1088970 ATTAAAGTAC
* * * * * *
1088980 CGACACTTTCAACATAACTGGTAGCGCTTTACTGGTTTTTTCATTTCGATATCGGTTTTGTCATA
1 CGACACTTTCAATATAACCGGTAGCGGTTTACCGGTTTTATCATTTCGATACCGGTTTTGTCATA
* * *
1089045 TTTTTACCTATTATATTGTTATGGATCGATACATTT-TCATAAAGTATTGACACTTTTTAGGCGC
66 TTTTTACCTGTTATATTGCTATGGATCGATACATTTGT-ATAAAGTATCGACACTTTTTAGGCGC
* *
1089109 TATAATTTCTTCTCTTTTAAATTACGAAAGTGTCGATACTTATATTAATTTAT
130 TATAACTTCTTCTCTTTTAAATTACAAAAGTGTCGATACTTATATTAATTTAT
* ** ** * *
1089162 CGACACTTTCAATATATCATGTAGCTTTTTACCGGTTTTATCATTTCGAGACCTGTTTTGTCATA
1 CGACACTTTCAATATAACCGGTAGCGGTTTACCGGTTTTATCATTTCGATACCGGTTTTGTCATA
* * * *
1089227 TTATTATCTGTTATATTGCTATGGATTGATACATTTGTATAAAGTATCGACACTTTTTAGGCACT
66 TTTTTACCTGTTATATTGCTATGGATCGATACATTTGTATAAAGTATCGACACTTTTTAGGCGCT
*
1089292 ATAACTTCTTATCTTTTAAATATA-AAAAGTGTCGATACTTATATTAATTTAT
131 ATAACTTCTTCTCTTTTAAAT-TACAAAAGTGTCGATACTTATATTAATTTAT
* * * *
1089344 CGACACTTTCAATATATCCGGTAGCGGTTTACAGGTTTTATCATAAT-GATACCGGTTTTATCAT
1 CGACACTTTCAATATAACCGGTAGCGGTTTACCGGTTTTATCAT-TTCGATACCGGTTTTGTCAT
* * *
1089408 ATTTTTACCTGTTATATTGCTATGGATCGATACATTTGTATAAAGTATCGACACTTTATAAGTGC
65 ATTTTTACCTGTTATATTGCTATGGATCGATACATTTGTATAAAGTATCGACACTTTTTAGGCGC
1089473 TATAACTTCTTCTCTTTTAAATTACAAAAGTGTCGATACTTATATTAATTTAT
130 TATAACTTCTTCTCTTTTAAATTACAAAAGTGTCGATACTTATATTAATTTAT
* * * * * *
1089526 TGACACTTTCAATATAACCGGTAGCAGTTTACCGGTTTTATAATAAT-GATACCGATTTTATCAT
1 CGACACTTTCAATATAACCGGTAGCGGTTTACCGGTTTTATCAT-TTCGATACCGGTTTTGTCAT
* * * * *
1089590 ATTTTTACATGTTACATGGCTATGGATCAATAAATTT
65 ATTTTTACCTGTTATATTGCTATGGATCGATACATTT
1089627 TTTATTTGTA
Statistics
Matches: 412, Mismatches: 49, Indels: 8
0.88 0.10 0.02
Matches are distributed among these distances:
181 2 0.00
182 406 0.99
183 4 0.01
ACGTcount: A:0.29, C:0.15, G:0.13, T:0.43
Consensus pattern (182 bp):
CGACACTTTCAATATAACCGGTAGCGGTTTACCGGTTTTATCATTTCGATACCGGTTTTGTCATA
TTTTTACCTGTTATATTGCTATGGATCGATACATTTGTATAAAGTATCGACACTTTTTAGGCGCT
ATAACTTCTTCTCTTTTAAATTACAAAAGTGTCGATACTTATATTAATTTAT
Found at i:1089416 original size:20 final size:20
Alignment explanation
Indices: 1089371--1089416 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
1089361 CCGGTAGCGG
*
1089371 TTTACAGGTTTTATCATAAT
1 TTTACCGGTTTTATCATAAT
** *
1089391 GATACCGGTTTTATCATATT
1 TTTACCGGTTTTATCATAAT
1089411 TTTACC
1 TTTACC
1089417 TGTTATATTG
Statistics
Matches: 20, Mismatches: 6, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.26, C:0.15, G:0.11, T:0.48
Consensus pattern (20 bp):
TTTACCGGTTTTATCATAAT
Found at i:1094468 original size:78 final size:78
Alignment explanation
Indices: 1094271--1094559 Score: 269
Period size: 80 Copynumber: 3.6 Consensus size: 78
1094261 TCGAAAACTT
* * * *
1094271 TGTTGACAAATAACCCTTCTTGCCTTGAGTTATGCTGTAAATGATGTGCCTTTGAGCTGAGTGTA
1 TGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCTTTGAGCTGAGTGTA
* * *
1094336 ATTGAA-CTCAAAGGTC
66 ATCGAAGGTC----TTC
* * * * * *
1094352 T-TTGGCATATAGCCCTTCTCGCCTTGAGCTATGCTGCAAATGATGTGTCTTTGATCTGAGTGTA
1 TGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCTTTGAGCTGAGTGTA
*
1094416 CTCGAAGGTCTTC
66 ATCGAAGGTCTTC
* * * *
1094429 TGTTGGAAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGAAGTGGCTTAGAGCTGAGCGTA
1 TGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCTTTGAGCTGA--GT-
1094494 GTCAAATTCGAAGGTCTT-
63 GT--AA-TCGAAGGTCTTC
* * *
1094512 TGGTTGGCAGATAACCCTTCTAGCTTTGAGTTATGTTGTAAATGATGT
1 T-GTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGT
1094560 CATCTTTGCT
Statistics
Matches: 172, Mismatches: 27, Indels: 15
0.80 0.13 0.07
Matches are distributed among these distances:
77 3 0.02
78 49 0.28
80 61 0.35
81 5 0.03
83 2 0.01
84 52 0.30
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.35
Consensus pattern (78 bp):
TGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCTTTGAGCTGAGTGTA
ATCGAAGGTCTTC
Found at i:1095160 original size:66 final size:66
Alignment explanation
Indices: 1095054--1095186 Score: 176
Period size: 66 Copynumber: 2.0 Consensus size: 66
1095044 AAGGGAAAAT
* * ** * *
1095054 TGTCTCAAGCGAGACGAAATTTGTTTCAAGAGAAACAATCTTAAAGGTTAGTGTTTCAAGAGAAA
1 TGTCTCAAGAGAGACAAAACATGTTTCAAGAGAAACAATCTCAAAGGTGAGTGTTTCAAGAGAAA
1095119 C
66 C
* * * *
1095120 TGTCTCAAGAGAGACAAAACATGTTTCAAGGGAAACAATCTCAAATGTGGGTGTTTCAAGGGAAA
1 TGTCTCAAGAGAGACAAAACATGTTTCAAGAGAAACAATCTCAAAGGTGAGTGTTTCAAGAGAAA
1095185 C
66 C
1095186 T
1 T
1095187 AATTCAAAAC
Statistics
Matches: 57, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
66 57 1.00
ACGTcount: A:0.38, C:0.14, G:0.23, T:0.26
Consensus pattern (66 bp):
TGTCTCAAGAGAGACAAAACATGTTTCAAGAGAAACAATCTCAAAGGTGAGTGTTTCAAGAGAAA
C
Found at i:1095343 original size:36 final size:36
Alignment explanation
Indices: 1095275--1095343 Score: 84
Period size: 36 Copynumber: 1.9 Consensus size: 36
1095265 AGAGAAACCG
* ** *
1095275 TCTCAAGGGAGACAAAATTTGTCTAAAGGGAAACTA
1 TCTCAAGAGAGACAAAATTCATCTAAACGGAAACTA
* *
1095311 TCTCAAGAGAGACAAAATTCATTTCAACGGAAA
1 TCTCAAGAGAGACAAAATTCATCTAAACGGAAA
1095344 TGTTTTCAAA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
36 27 1.00
ACGTcount: A:0.43, C:0.16, G:0.19, T:0.22
Consensus pattern (36 bp):
TCTCAAGAGAGACAAAATTCATCTAAACGGAAACTA
Found at i:1095355 original size:101 final size:95
Alignment explanation
Indices: 1095232--1095424 Score: 269
Period size: 101 Copynumber: 2.0 Consensus size: 95
1095222 TATTTTGTGC
* *
1095232 TTCAAGGGAAATATTTTCAAAGTTTATGTTTCAAGAGAAACCGTCTCAAGGGAGACAAAATTTGT
1 TTCAACGGAAATATTTTCAAAGTTTATGTTTCAAGAGAAACCGTCTCAA-GG-G---AAA-CTGT
1095297 CTAAAGGGAAACTATCTCAAGAGAGACAAAATTCAT
60 CTAAAGGGAAACTATCTCAAGAGAGACAAAATTCAT
* * *
1095333 TTCAACGGAAATGTTTTCAAAGTTTATGTTTCAAGAGAAACTGTCTCAAGGGAAACTGTCTCAAG
1 TTCAACGGAAATATTTTCAAAGTTTATGTTTCAAGAGAAACCGTCTCAAGGGAAACTGTCTAAAG
* *
1095398 GGAAACTGTCTCAAGGGAGACAAAATT
66 GGAAACTATCTCAAGAGAGACAAAATT
1095425 TTGTTTCAAG
Statistics
Matches: 85, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
95 33 0.39
96 3 0.04
99 1 0.01
100 2 0.02
101 46 0.54
ACGTcount: A:0.38, C:0.15, G:0.20, T:0.27
Consensus pattern (95 bp):
TTCAACGGAAATATTTTCAAAGTTTATGTTTCAAGAGAAACCGTCTCAAGGGAAACTGTCTAAAG
GGAAACTATCTCAAGAGAGACAAAATTCAT
Found at i:1095381 original size:15 final size:15
Alignment explanation
Indices: 1095363--1095467 Score: 111
Period size: 15 Copynumber: 6.5 Consensus size: 15
1095353 AGTTTATGTT
*
1095363 TCAAGAGAAACTGTC
1 TCAAGGGAAACTGTC
1095378 TCAAGGGAAACTGTC
1 TCAAGGGAAACTGTC
1095393 TCAAGGGAAACTGTC
1 TCAAGGGAAACTGTC
* *
1095408 TCAAGGGAGACAAAATTTTGTT
1 TCAA-GG-G---AAA--CTGTC
*
1095430 TCAAGGGAAAATGTC
1 TCAAGGGAAACTGTC
1095445 TCAAGGGAAACTGTC
1 TCAAGGGAAACTGTC
1095460 TCAAGGGA
1 TCAAGGGA
1095468 GATAACTTTC
Statistics
Matches: 77, Mismatches: 6, Indels: 14
0.79 0.06 0.14
Matches are distributed among these distances:
15 58 0.75
16 2 0.03
17 4 0.05
20 4 0.05
21 2 0.03
22 7 0.09
ACGTcount: A:0.36, C:0.16, G:0.26, T:0.22
Consensus pattern (15 bp):
TCAAGGGAAACTGTC
Found at i:1095456 original size:52 final size:52
Alignment explanation
Indices: 1095373--1095501 Score: 179
Period size: 52 Copynumber: 2.5 Consensus size: 52
1095363 TCAAGAGAAA
* *
1095373 CTGTCTCAAGGGAAACTGTCTCAAGGGAAACTGTCTCAAGGGAGACAAAATTT
1 CTGTTTCAAGGGAAAATGTCTCAAGGGAAACTGTCTCAAGGGAGA-AAAATTT
* *
1095426 -TGTTTCAAGGGAAAATGTCTCAAGGGAAACTGTCTCAAGGGAGATAACTTT
1 CTGTTTCAAGGGAAAATGTCTCAAGGGAAACTGTCTCAAGGGAGAAAAATTT
* * *
1095477 CTGTTTCGAGGGAAATTATCTCAAG
1 CTGTTTCAAGGGAAAATGTCTCAAG
1095502 CGAGATAAAA
Statistics
Matches: 68, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
51 5 0.07
52 63 0.93
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.26
Consensus pattern (52 bp):
CTGTTTCAAGGGAAAATGTCTCAAGGGAAACTGTCTCAAGGGAGAAAAATTT
Found at i:1095525 original size:20 final size:20
Alignment explanation
Indices: 1095502--1095564 Score: 58
Period size: 20 Copynumber: 3.2 Consensus size: 20
1095492 TTATCTCAAG
1095502 CGAGATAAAATCTTCTGTTT
1 CGAGATAAAATCTTCTGTTT
** ***
1095522 CGAG-GGAAA-CTATCTCAAT
1 CGAGATAAAATCT-TCTGTTT
1095541 CGAGATAAAATCTTCTGTTT
1 CGAGATAAAATCTTCTGTTT
1095561 CGAG
1 CGAG
1095565 GGAAATTATC
Statistics
Matches: 30, Mismatches: 10, Indels: 6
0.65 0.22 0.13
Matches are distributed among these distances:
18 2 0.07
19 11 0.37
20 15 0.50
21 2 0.07
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32
Consensus pattern (20 bp):
CGAGATAAAATCTTCTGTTT
Found at i:1095528 original size:39 final size:39
Alignment explanation
Indices: 1095448--1095671 Score: 323
Period size: 39 Copynumber: 5.8 Consensus size: 39
1095438 AAATGTCTCA
* * *
1095448 AGGGAAACTGTCTCAAGGGAGAT-AACT-TTCTGTTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
*
1095485 AGGGAAATTATCTCAAGCGAGATAAAATCTTCTGTTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
*
1095524 AGGGAAACTATCTCAATCGAGATAAAATCTTCTGTTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
*
1095563 AGGGAAATTATCTCAAGCGAGA-AAATAT-TT-TGTTTCG
1 AGGGAAACTATCTCAAGCGAGATAAA-ATCTTCTGTTTCG
* * *
1095600 AGGGAAACTATCTCAAACGAGACAAAATCTTCTATTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
1095639 AGGGAAACTATCTCAAGCGAGATAAAATCTTCT
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCT
1095672 TTAAAAACAG
Statistics
Matches: 168, Mismatches: 13, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
37 49 0.29
38 13 0.08
39 106 0.63
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29
Consensus pattern (39 bp):
AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
Found at i:1095546 original size:76 final size:77
Alignment explanation
Indices: 1095448--1095671 Score: 321
Period size: 76 Copynumber: 2.9 Consensus size: 77
1095438 AAATGTCTCA
* ** *
1095448 AGGGAAACTGTCTCAAGGGAGATAACT-TTCTGTTTCGAGGGAAATTATCTCAAGCGAGATAAAA
1 AGGGAAACTATCTCAAACGAGATAAATCTTCTGTTTCGAGGGAAATTATCTCAAGCGAGATAAAA
1095512 TCTTCTGTTTCG
66 TCTTCTGTTTCG
*
1095524 AGGGAAACTATCTCAATCGAGATAAAATCTTCTGTTTCGAGGGAAATTATCTCAAGCGAGA-AAA
1 AGGGAAACTATCTCAAACGAGAT-AAATCTTCTGTTTCGAGGGAAATTATCTCAAGCGAGATAAA
1095588 TAT-TT-TGTTTCG
65 -ATCTTCTGTTTCG
* * *
1095600 AGGGAAACTATCTCAAACGAGACAAAATCTTCTATTTCGAGGGAAACTATCTCAAGCGAGATAAA
1 AGGGAAACTATCTCAAACGAGA-TAAATCTTCTGTTTCGAGGGAAATTATCTCAAGCGAGATAAA
1095665 ATCTTCT
65 ATCTTCT
1095672 TTAAAAACAG
Statistics
Matches: 133, Mismatches: 8, Indels: 12
0.87 0.05 0.08
Matches are distributed among these distances:
76 85 0.64
77 13 0.10
78 35 0.26
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29
Consensus pattern (77 bp):
AGGGAAACTATCTCAAACGAGATAAATCTTCTGTTTCGAGGGAAATTATCTCAAGCGAGATAAAA
TCTTCTGTTTCG
Found at i:1095768 original size:76 final size:74
Alignment explanation
Indices: 1095682--1095911 Score: 284
Period size: 76 Copynumber: 3.0 Consensus size: 74
1095672 TTAAAAACAG
**
1095682 TCTTGAGTGAAATGAAATGTCTTCTTTCGAGTGAAAA-TCGTCTCAAACGAGACAAATCTTGTTT
1 TCTTGAGTGAAAT-AAATGTCTTCTTTCGAGT-AAAACT-GTCTCAAGTGAGACAAATCTTGTTT
1095746 TAAGAAAAATAA
63 TAAGAAAAATAA
* * * * *
1095758 TCTTGAGTGAAATAAATCTTCTTGTTTCGAGTAAAAACTGTTTCAAGTGAGATAAATTTTGTTTT
1 TCTTGAGTGAAATAAAT-GTCTTCTTTCGAGT-AAAACTGTCTCAAGTGAGACAAATCTTGTTTT
* *
1095823 AAGAGAAACAA
64 AAGAAAAATAA
* *
1095834 TCATGAGTCAAATTAAATGTCTTCTTTCGAGTAAAACTGTCTCAAGTGAGACAAAGTC-TGTTTT
1 TCTTGAGTGAAA-TAAATGTCTTCTTTCGAGTAAAACTGTCTCAAGTGAGACAAA-TCTTGTTTT
1095898 AAGAAAAATAA
64 AAGAAAAATAA
1095909 TCT
1 TCT
1095912 CAAGTGAGAT
Statistics
Matches: 130, Mismatches: 20, Indels: 9
0.82 0.13 0.06
Matches are distributed among these distances:
75 42 0.32
76 82 0.63
77 6 0.05
ACGTcount: A:0.37, C:0.12, G:0.17, T:0.34
Consensus pattern (74 bp):
TCTTGAGTGAAATAAATGTCTTCTTTCGAGTAAAACTGTCTCAAGTGAGACAAATCTTGTTTTAA
GAAAAATAA
Found at i:1095967 original size:151 final size:150
Alignment explanation
Indices: 1095643--1095931 Score: 331
Period size: 151 Copynumber: 1.9 Consensus size: 150
1095633 ATTTCGAGGG
* * * * * *
1095643 AAACTATCTCAAGCGAGATAAAATCTT-CTTT-A-A-AAACAGTCTTGAGTGAAATGAAATGTCT
1 AAACTGTCTCAAGCGAGA-AAAATTTTGTTTTAAGAGAAACAATCATGAGTCAAATGAAATGTCT
**
1095704 TCTTTCGAGTGAAAATCGTCTCAAACGAGACAAATCTTGTTTTAAGAAAAATAATCTTGAGTGAA
65 TCTTTCGAGTGAAAATCGTCTCAAACGAGACAAATCTTGTTTTAAGAAAAATAATCTCAAGTGAA
*
1095769 ATAAATCTTCTTGTTTCGAGTAA
130 ATAAATCATCTTG--TCGAGTAA
* * * *
1095792 AAACTGTTTCAAGTGAGATAAATTTTGTTTTAAGAGAAACAATCATGAGTCAAATTAAATGTCTT
1 AAACTGTCTCAAGCGAGAAAAATTTTGTTTTAAGAGAAACAATCATGAGTCAAATGAAATGTCTT
**
1095857 CTTTCGAGT-AAAA-CTGTCTCAAGTGAGACAAAGTC-TGTTTTAAGAAAAATAATCTCAAGTGA
66 CTTTCGAGTGAAAATC-GTCTCAAACGAGACAAA-TCTTGTTTTAAGAAAAATAATCTCAAGTGA
*
1095919 GATAAAATCATCT
129 AAT-AAATCATCT
1095932 GCATTAAATG
Statistics
Matches: 117, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
148 6 0.05
149 18 0.15
150 2 0.02
151 47 0.40
152 44 0.38
ACGTcount: A:0.39, C:0.13, G:0.16, T:0.32
Consensus pattern (150 bp):
AAACTGTCTCAAGCGAGAAAAATTTTGTTTTAAGAGAAACAATCATGAGTCAAATGAAATGTCTT
CTTTCGAGTGAAAATCGTCTCAAACGAGACAAATCTTGTTTTAAGAAAAATAATCTCAAGTGAAA
TAAATCATCTTGTCGAGTAA
Found at i:1097153 original size:96 final size:95
Alignment explanation
Indices: 1096934--1097190 Score: 304
Period size: 96 Copynumber: 2.7 Consensus size: 95
1096924 GGCTAGCTGA
* * * * * *
1096934 ATCCATAAAGCCGGAGCGTTTAATCAATTGATCTAGAGGGACAACTTAATATCG-TTGTATAG-A
1 ATCCATAAAGACGGGGCGTTTAACCAATTGCTCTAGAGGGACAAC-T--CA-CGCTT-TATTGTA
* *
1096997 TATTATAATCACTTTTATCAGGCTAGCAGAATATT
61 TATTATAATCACCTTTACCAGGCTAGCAGAATATT
**
1097032 ATCCATAAAGTTGGGGCGTTTAACCAATTGCTCTAGAGGGACAACTCACGCTTTATTGTATATTA
1 ATCCATAAAGACGGGGCGTTTAACCAATTGCTCTAGAGGGACAACTCACGCTTTATTGTATATTA
*
1097097 TAATCACCTTTACCAGGCTTAGCTA-AATCTT
66 TAATCACCTTTACCAGGC-TAGC-AGAATATT
* * *
1097128 ATCCATAAAGACGGGGTGTTTAACCAATTGCTTTAGAGGGACAACTCAAGCTTTATTGTATAT
1 ATCCATAAAGACGGGGCGTTTAACCAATTGCTCTAGAGGGACAACTCACGCTTTATTGTATAT
1097191 ATGTAATATT
Statistics
Matches: 140, Mismatches: 15, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
94 6 0.04
95 25 0.18
96 67 0.48
97 2 0.01
98 40 0.29
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.33
Consensus pattern (95 bp):
ATCCATAAAGACGGGGCGTTTAACCAATTGCTCTAGAGGGACAACTCACGCTTTATTGTATATTA
TAATCACCTTTACCAGGCTAGCAGAATATT
Found at i:1099659 original size:6 final size:6
Alignment explanation
Indices: 1099650--1099675 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
1099640 CGAAAATTAG
1099650 AATTTA AATTTA AATTTA AATTTA AA
1 AATTTA AATTTA AATTTA AATTTA AA
1099676 AAAATCGATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (6 bp):
AATTTA
Found at i:1102748 original size:20 final size:23
Alignment explanation
Indices: 1102709--1102749 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
1102699 AAAATAACAA
1102709 ATTATAACAAATATTAGTTACTT
1 ATTATAACAAATATTAGTTACTT
1102732 ATTATAA-AAA-ATT-GTTAC
1 ATTATAACAAATATTAGTTAC
1102750 AATTAATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 5 0.28
21 3 0.17
22 3 0.17
23 7 0.39
ACGTcount: A:0.46, C:0.07, G:0.05, T:0.41
Consensus pattern (23 bp):
ATTATAACAAATATTAGTTACTT
Found at i:1102800 original size:32 final size:30
Alignment explanation
Indices: 1102764--1102826 Score: 74
Period size: 32 Copynumber: 2.0 Consensus size: 30
1102754 AATATTTTTT
1102764 TCACAATAACAAA-TTAAAACAAAATAATTTAG
1 TCACAATAA-AAAGTTAAAA-AAAAT-ATTTAG
* *
1102796 TCACAGTAAAAAGTTATAAAAAATATTTAG
1 TCACAATAAAAAGTTAAAAAAAATATTTAG
1102826 T
1 T
1102827 GACGAAATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
30 7 0.25
31 8 0.29
32 13 0.46
ACGTcount: A:0.56, C:0.10, G:0.06, T:0.29
Consensus pattern (30 bp):
TCACAATAAAAAGTTAAAAAAAATATTTAG
Found at i:1104963 original size:2 final size:2
Alignment explanation
Indices: 1104956--1105005 Score: 100
Period size: 2 Copynumber: 25.0 Consensus size: 2
1104946 CGTTGAGATA
1104956 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1104998 AT AT AT AT
1 AT AT AT AT
1105006 CGAGTATAAA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1107324 original size:5 final size:5
Alignment explanation
Indices: 1107316--1107342 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
1107306 AATCATTAAA
1107316 AATAT AATAT AATAT AATAT AATAT AA
1 AATAT AATAT AATAT AATAT AATAT AA
1107343 AACTTACATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (5 bp):
AATAT
Found at i:1109178 original size:16 final size:16
Alignment explanation
Indices: 1109154--1109184 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
1109144 CATTTTCGAA
1109154 TCATGCATTAAAATAT
1 TCATGCATTAAAATAT
*
1109170 TCATTCATTAAAATA
1 TCATGCATTAAAATA
1109185 ATGATAATAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.13, G:0.03, T:0.39
Consensus pattern (16 bp):
TCATGCATTAAAATAT
Found at i:1112361 original size:52 final size:51
Alignment explanation
Indices: 1112294--1112463 Score: 144
Period size: 52 Copynumber: 3.2 Consensus size: 51
1112284 TTAAAAGAAG
* * *
1112294 CTAAGCCTAAATTTTAGGTGTATCTTAATATTTTCAAATGAGTTTTTATAAA
1 CTAAGCCTAATTTTTAGG-GTTTCTTAATATTTTCAAATGAGTTTTTAAAAA
* * * *
1112346 CTAAGCCTGATTTTTAGGGGTTTCTTGAGGT-TGATTTCCAATGAATTTTTAAAAGAA
1 CTAAGCCTAATTTTTA-GGGTTTCTT-A-ATAT--TTTCAAATGAGTTTTT-AAA-AA
* * * *
1112403 GCTAAGCCTAATTTTTAAGGGTTTCTTGATATTTTTAAATGAGCTTTTAGAAA
1 -CTAAGCCTAATTTTT-AGGGTTTCTTAATATTTTCAAATGAGTTTTTAAAAA
1112456 CTAAGCCT
1 CTAAGCCT
1112464 GGGTTTTTTT
Statistics
Matches: 93, Mismatches: 15, Indels: 20
0.73 0.12 0.16
Matches are distributed among these distances:
52 28 0.30
53 6 0.06
54 3 0.03
55 26 0.28
56 3 0.03
57 3 0.03
58 23 0.25
59 1 0.01
ACGTcount: A:0.31, C:0.11, G:0.16, T:0.42
Consensus pattern (51 bp):
CTAAGCCTAATTTTTAGGGTTTCTTAATATTTTCAAATGAGTTTTTAAAAA
Found at i:1112417 original size:58 final size:56
Alignment explanation
Indices: 1112283--1112444 Score: 165
Period size: 55 Copynumber: 2.9 Consensus size: 56
1112273 CAGAGGCTCC
* * * *
1112283 TTTAAAAGAAGCTAAGCCTAAATTTTAGGTGTATCTT-AATATTTTCAAATGAGTT
1 TTTAAAAGAAGCTAAGCCTAATTTTTAGGGGTTTCTTGAATATTTTCAAATGAATT
* * * *
1112338 TTT-ATA-AA-CTAAGCCTGATTTTTAGGGGTTTCTTGAGGT-TGATTTCCAATGAATT
1 TTTAAAAGAAGCTAAGCCTAATTTTTAGGGGTTTCTTGA-ATAT--TTTCAAATGAATT
* *
1112393 TTTAAAAGAAGCTAAGCCTAATTTTTAAGGGTTTCTTG-ATATTTTTAAATGA
1 TTTAAAAGAAGCTAAGCCTAATTTTTAGGGGTTTCTTGAATATTTTCAAATGA
1112445 GCTTTTAGAA
Statistics
Matches: 85, Mismatches: 14, Indels: 16
0.74 0.12 0.14
Matches are distributed among these distances:
52 22 0.26
53 4 0.05
54 3 0.04
55 25 0.29
56 3 0.04
57 3 0.04
58 25 0.29
ACGTcount: A:0.32, C:0.09, G:0.17, T:0.42
Consensus pattern (56 bp):
TTTAAAAGAAGCTAAGCCTAATTTTTAGGGGTTTCTTGAATATTTTCAAATGAATT
Found at i:1112772 original size:39 final size:38
Alignment explanation
Indices: 1112729--1112824 Score: 138
Period size: 39 Copynumber: 2.5 Consensus size: 38
1112719 AGGGATCAAC
* *
1112729 ATCTCGCTTGAGATAGTTTCACTCAAAACAGAAGATTTT
1 ATCTCACTTGAGATAGTTTCACTCAAAACAAAAGA-TTT
*
1112768 ATCTCACTTGAGATAGTTTCACTCGAAACAAAAGATTT
1 ATCTCACTTGAGATAGTTTCACTCAAAACAAAAGATTT
* *
1112806 ATCTCACTTAAGATTGTTT
1 ATCTCACTTGAGATAGTTT
1112825 TTCTTAAAAT
Statistics
Matches: 52, Mismatches: 5, Indels: 1
0.90 0.09 0.02
Matches are distributed among these distances:
38 20 0.38
39 32 0.62
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35
Consensus pattern (38 bp):
ATCTCACTTGAGATAGTTTCACTCAAAACAAAAGATTT
Found at i:1113066 original size:37 final size:39
Alignment explanation
Indices: 1112980--1113074 Score: 122
Period size: 39 Copynumber: 2.5 Consensus size: 39
1112970 AGGGATCAAC
* * *
1112980 ATCTCGCTTGAGATAGTTTCACTCGAAACAGAAGTTTTT
1 ATCTCACTTGAGATAGTTTCACTCGAAACAGAAATATTT
*
1113019 ATCTCGCTTGAGATAGTTTCACTCG-AACA-AAATATTT
1 ATCTCACTTGAGATAGTTTCACTCGAAACAGAAATATTT
* *
1113056 ATCTTACTTGAGATTGTTT
1 ATCTCACTTGAGATAGTTT
1113075 TTCTTAAAAC
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
37 22 0.43
38 4 0.08
39 25 0.49
ACGTcount: A:0.28, C:0.17, G:0.16, T:0.39
Consensus pattern (39 bp):
ATCTCACTTGAGATAGTTTCACTCGAAACAGAAATATTT
Found at i:1113231 original size:59 final size:57
Alignment explanation
Indices: 1113088--1113231 Score: 137
Period size: 59 Copynumber: 2.5 Consensus size: 57
1113078 TTAAAACAAA
* * * *
1113088 CAACGCCTCACTTGATGGATCAACATTTATTTGCTCGATTCATAAAACTTCGAATCAG
1 CAACGCCTCACATGAGGGA-CAACATTTATGTGCTCGATTCACAAAACTTCGAATCAG
* * ** *
1113146 CAACACCCCACCA-GAGGGGATGACATTTCATGTGCTCGATTCACAACACTTCGAATCAG
1 CAACGCCTCA-CATGA-GGGACAACATTT-ATGTGCTCGATTCACAAAACTTCGAATCAG
* *
1113205 CCACGCCTCACATGAGGAACCAACATT
1 CAACGCCTCACATGAGGGA-CAACATT
1113232 CCCAATAGAG
Statistics
Matches: 66, Mismatches: 15, Indels: 9
0.73 0.17 0.10
Matches are distributed among these distances:
58 21 0.32
59 45 0.68
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.24
Consensus pattern (57 bp):
CAACGCCTCACATGAGGGACAACATTTATGTGCTCGATTCACAAAACTTCGAATCAG
Found at i:1113399 original size:91 final size:89
Alignment explanation
Indices: 1113178--1113420 Score: 245
Period size: 92 Copynumber: 2.7 Consensus size: 89
1113168 ACATTTCATG
* * * * * * * *
1113178 TGCTCGATTCACAACACTTCGAATCAGCCACGCCTCACATGAGGAACCAACATTCCCAATAGAGA
1 TGCTCGATTCACGACATTTCGAATCAGCGATGCCTCACTTGAGGGA-CAACATTTCCAGTAGAGA
* *
1113243 ATTCATGAGAATAACTTATTCAACCT
65 ATTCATAAGAAGAACTTATTC-ACCT
** * * *
1113269 TGTCTCGATTCACGGTATTTTGAATCAGTGATGACTCACTTGAGGGATCAACATTTCCAGTAGAG
1 TG-CTCGATTCACGACATTTCGAATCAGCGATGCCTCACTTGAGGGA-CAACATTTCCAGTAGAG
* *
1113334 AATTCATAAAGAAGAGCTTATTTC-CTT
64 AATTCAT-AAGAAGAACTTA-TTCACCT
* *
1113361 TGCTCGATTCACGACATTTCGAATCAGCGATGCCTCACTCGATGGACGAACATTTCCAGT
1 TGCTCGATTCACGACATTTCGAATCAGCGATGCCTCACTTGAGGGAC-AACATTTCCAGT
1113421 GGACAGATCA
Statistics
Matches: 123, Mismatches: 25, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
90 1 0.01
91 51 0.41
92 59 0.48
93 9 0.07
94 3 0.02
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.28
Consensus pattern (89 bp):
TGCTCGATTCACGACATTTCGAATCAGCGATGCCTCACTTGAGGGACAACATTTCCAGTAGAGAA
TTCATAAGAAGAACTTATTCACCT
Found at i:1114894 original size:18 final size:17
Alignment explanation
Indices: 1114847--1114903 Score: 71
Period size: 18 Copynumber: 3.2 Consensus size: 17
1114837 TGTACTTGTG
1114847 TTTATTTTATTTT-TTAT
1 TTTATTTT-TTTTATTAT
1114864 TTTATTTCGTTTTTATTAT
1 TTTATTT--TTTTTATTAT
1114883 TTTATTATTTTTTATTAT
1 TTTATT-TTTTTTATTAT
1114901 TTT
1 TTT
1114904 TAAATTAGTT
Statistics
Matches: 36, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
17 7 0.19
18 17 0.47
19 11 0.31
20 1 0.03
ACGTcount: A:0.18, C:0.02, G:0.02, T:0.79
Consensus pattern (17 bp):
TTTATTTTTTTTATTAT
Found at i:1114895 original size:10 final size:10
Alignment explanation
Indices: 1114853--1114904 Score: 52
Period size: 10 Copynumber: 4.8 Consensus size: 10
1114843 TGTGTTTATT
1114853 TTATTTTTTA
1 TTATTTTTTA
1114863 TTTTATTTCGTTT-
1 --TTATTT--TTTA
1114876 TTATTATTTTA
1 TTATT-TTTTA
1114887 TTATTTTTTA
1 TTATTTTTTA
1114897 TTATTTTT
1 TTATTTTT
1114905 AAATTAGTTT
Statistics
Matches: 36, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
10 16 0.44
11 10 0.28
12 7 0.19
14 3 0.08
ACGTcount: A:0.17, C:0.02, G:0.02, T:0.79
Consensus pattern (10 bp):
TTATTTTTTA
Found at i:1116465 original size:15 final size:15
Alignment explanation
Indices: 1116428--1116465 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
1116418 ATATATTATA
1116428 TATAAA-TTT-ATTT
1 TATAAATTTTCATTT
1116441 TATAAATTTTCATTT
1 TATAAATTTTCATTT
*
1116456 TATAAGTTTT
1 TATAAATTTT
1116466 ACCTTTTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 6 0.27
14 3 0.14
15 13 0.59
ACGTcount: A:0.34, C:0.03, G:0.03, T:0.61
Consensus pattern (15 bp):
TATAAATTTTCATTT
Found at i:1122561 original size:23 final size:23
Alignment explanation
Indices: 1122526--1122598 Score: 103
Period size: 23 Copynumber: 3.2 Consensus size: 23
1122516 ATACTTTACA
* *
1122526 ATATAAGCACTACCTATTACATT
1 ATATAAACGCTACCTATTACATT
1122549 ATATAAACGCTACCTATTACATT
1 ATATAAACGCTACCTATTACATT
*
1122572 ATATAAGA-GCTACCTATTACATC
1 ATATAA-ACGCTACCTATTACATT
1122595 ATAT
1 ATAT
1122599 TTTTACCTAT
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
23 45 0.98
24 1 0.02
ACGTcount: A:0.40, C:0.21, G:0.05, T:0.34
Consensus pattern (23 bp):
ATATAAACGCTACCTATTACATT
Found at i:1123048 original size:23 final size:23
Alignment explanation
Indices: 1123013--1123085 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
1123003 ATACTTTACA
*
1123013 ATATAAGCACTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
*
1123036 ATATAAACGCTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
*
1123059 ATATAAGCGCTACCTATTACATC
1 ATATAAGCGCTACCTATTACATT
1123082 ATAT
1 ATAT
1123086 TTTTACCTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.38, C:0.22, G:0.05, T:0.34
Consensus pattern (23 bp):
ATATAAGCGCTACCTATTACATT
Found at i:1123098 original size:487 final size:487
Alignment explanation
Indices: 1122123--1123429 Score: 2452
Period size: 487 Copynumber: 2.7 Consensus size: 487
1122113 TTATAATATG
* * *
1122123 TTGAAAGTGTCCATACTTTTTATAAAAATGATCGATATTTTTTTTAAAGTTATGTAATTTATGTT
1 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTT
* *
1122188 TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTTATTTGCA
66 TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACA
* *
1122253 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAATAATAT
131 CAAAATATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATAT
*
1122318 TAACCAAAGATAATAATAAATATGTAATATATACGTTTATTGTTTTTAATTTAATAATAATATAT
196 TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAA-TT--TAATAATATAT
* *
1122383 ATCGTAACGTAAAAAATAAATCATTAGACGTCTATAATTACTAAATTAATATCTTAAAACTCACT
258 ACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
*
1122448 CAAAAGATAACCTTAAATTAATATTTTCCACAGTGAAAAAAGTATGGCCACTTTTATAAAAAGGA
323 CAAAAGATAACCTTAAATTAATATTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGA
1122513 TAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAA
388 TAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAA
1122578 GAGCTACCTATTACATCATATTTTTACCTATTATA
453 GAGCTACCTATTACATCATATTTTTACCTATTATA
1122613 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTT
1 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTT
1122678 TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACA
66 TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACA
*
1122743 CAAAATATTATTTGATTGTTTTGATATTTTATAAAAAAATATTTAGAATTTAAATTTAACAATAT
131 CAAAATATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATAT
1122808 TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATATATACC
196 TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATATATACC
1122873 GTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAA
261 GTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAA
* *
1122938 AAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACATTTTTATAAAAAGGATAG
326 AAGATAACCTTAAATTAATATTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAG
*
1123003 ATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAAGCG
391 ATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAAGAG
1123068 CTACCTATTACATCATATTTTTACCTATTATA
456 CTACCTATTACATCATATTTTTACCTATTATA
1123100 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTT
1 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTT
1123165 TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACA
66 TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACA
1123230 CAAAATATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATAT
131 CAAAATATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATAT
1123295 TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATATATACC
196 TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATATATACC
1123360 GTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAA
261 GTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAA
1123425 AAGAT
326 AAGAT
1123430 GTATATACCT
Statistics
Matches: 801, Mismatches: 16, Indels: 3
0.98 0.02 0.00
Matches are distributed among these distances:
487 564 0.70
489 2 0.00
490 235 0.29
ACGTcount: A:0.40, C:0.11, G:0.08, T:0.41
Consensus pattern (487 bp):
TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTT
TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACA
CAAAATATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATAT
TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATATATACC
GTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAA
AAGATAACCTTAAATTAATATTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAG
ATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAAGAG
CTACCTATTACATCATATTTTTACCTATTATA
Found at i:1126245 original size:183 final size:183
Alignment explanation
Indices: 1125936--1126692 Score: 1288
Period size: 183 Copynumber: 4.1 Consensus size: 183
1125926 TACTTAAAAT
* *
1125936 TACCGACACAATATTAAAACGTGTCGATATAGGTTGTAAGATCTATTCGCTCATAAAACCGGTAT
1 TACCGACACAATATTAAAAAGTGTCGATATAGGTTGT-AGACCTATTCGCTCATAAAACCGGTAT
1126001 ATTTATACCGGTTATATTACAAAATTATCTATTACATTATAAATCTGGGTTCCGATGTGTAAATG
65 ATTTATACCGGTTATATTACAAAATTATCTATTACATTATAAATCTGGGTTCCGATGTGTAAATG
*
1126066 TCGACACTTTTTTAAATGGTATTGACACATTTTTCTTCCAATCTGGACATAAAG
130 TCGACACTTTTTTAAATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAG
*
1126120 TACCGACACAATATTAGAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATA
1 TACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATA
1126185 TTTATACCGGTTATATTACAAAATTATCTATTACATTATAAATCTGGGTTCCGATGTGTAAATGT
66 TTTATACCGGTTATATTACAAAATTATCTATTACATTATAAATCTGGGTTCCGATGTGTAAATGT
1126250 CGACACTTTTTTAAATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAG
131 CGACACTTTTTTAAATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAG
* *
1126303 TACCGACACAATATTAGAAAGTGTCAATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATA
1 TACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATA
* *
1126368 TTTATACCGGTTATATTACAAAACTATCTATTACATTATAATTCTGGGTTCCGATGTGTAAATGT
66 TTTATACCGGTTATATTACAAAATTATCTATTACATTATAAATCTGGGTTCCGATGTGTAAATGT
* *
1126433 CGACACTATTTGACAAT-GTATCGACACATTTTTCTTCCAATCTGGACATAAAG
131 CGACACTTTTTTA-AATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAG
*
1126486 TACCGAAACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATA
1 TACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATA
* * *
1126551 TTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTCT-GGTTCCGATGTTTTTTCAA
66 TTTATACCGGTTATATTACAAAATTATCTATTACATTATAAATCTGGGTTCCGATG---TGTAAA
* *
1126615 --TCGACAGTTTTTTAAATGGTATCGACACATTTTTCTTCCATTCTGGACATAAAG
128 TGTCGACACTTTTTTAAATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAG
*
1126669 TACAGACACAATATTAAAAAGTGT
1 TACCGACACAATATTAAAAAGTGT
1126693 GAAAACTTTG
Statistics
Matches: 547, Mismatches: 21, Indels: 11
0.94 0.04 0.02
Matches are distributed among these distances:
182 13 0.02
183 492 0.90
184 38 0.07
185 4 0.01
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.35
Consensus pattern (183 bp):
TACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATA
TTTATACCGGTTATATTACAAAATTATCTATTACATTATAAATCTGGGTTCCGATGTGTAAATGT
CGACACTTTTTTAAATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAG
Found at i:1127903 original size:3 final size:3
Alignment explanation
Indices: 1127895--1127963 Score: 66
Period size: 3 Copynumber: 23.0 Consensus size: 3
1127885 ACTTGTTTGG
* * * * * *
1127895 ATC ATC ATC ATC ATC ATC GTC ATC ATC TTC ATC GTC AGC TTC ATC GTC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
* *
1127943 ATC ATC ATC GTC ATC TTC ATC
1 ATC ATC ATC ATC ATC ATC ATC
1127964 GTCAGCTTCA
Statistics
Matches: 50, Mismatches: 16, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.23, C:0.33, G:0.07, T:0.36
Consensus pattern (3 bp):
ATC
Found at i:1127912 original size:12 final size:12
Alignment explanation
Indices: 1127895--1127967 Score: 83
Period size: 12 Copynumber: 6.1 Consensus size: 12
1127885 ACTTGTTTGG
*
1127895 ATCATCATCATC
1 ATCATCATCGTC
* *
1127907 ATCATCGTCATC
1 ATCATCATCGTC
*
1127919 ATCTTCATCGTC
1 ATCATCATCGTC
* *
1127931 AGCTTCATCGTC
1 ATCATCATCGTC
1127943 ATCATCATCGTC
1 ATCATCATCGTC
*
1127955 ATCTTCATCGTC
1 ATCATCATCGTC
1127967 A
1 A
1127968 GCTTCATCTT
Statistics
Matches: 53, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 53 1.00
ACGTcount: A:0.23, C:0.33, G:0.08, T:0.36
Consensus pattern (12 bp):
ATCATCATCGTC
Found at i:1127946 original size:36 final size:36
Alignment explanation
Indices: 1127899--1127980 Score: 128
Period size: 36 Copynumber: 2.3 Consensus size: 36
1127889 GTTTGGATCA
*
1127899 TCATCATCATCATCGTCATCATCTTCATCGTCAGCT
1 TCATCATCATCATCATCATCATCTTCATCGTCAGCT
* *
1127935 TCATCGTCATCATCATCGTCATCTTCATCGTCAGCT
1 TCATCATCATCATCATCATCATCTTCATCGTCAGCT
*
1127971 TCATCTTCAT
1 TCATCATCAT
1127981 TGACCGCTTG
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 42 1.00
ACGTcount: A:0.21, C:0.33, G:0.09, T:0.38
Consensus pattern (36 bp):
TCATCATCATCATCATCATCATCTTCATCGTCAGCT
Found at i:1127972 original size:12 final size:12
Alignment explanation
Indices: 1127921--1127975 Score: 83
Period size: 12 Copynumber: 4.6 Consensus size: 12
1127911 TCGTCATCAT
1127921 CTTCATCGTCAG
1 CTTCATCGTCAG
*
1127933 CTTCATCGTCAT
1 CTTCATCGTCAG
* *
1127945 CATCATCGTCAT
1 CTTCATCGTCAG
1127957 CTTCATCGTCAG
1 CTTCATCGTCAG
1127969 CTTCATC
1 CTTCATC
1127976 TTCATTGACC
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 39 1.00
ACGTcount: A:0.18, C:0.35, G:0.11, T:0.36
Consensus pattern (12 bp):
CTTCATCGTCAG
Done.