Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000260.1 Hibiscus syriacus cultivar Beakdansim tig00000477_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5583615
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 8 of 26
Found at i:1521946 original size:72 final size:72
Alignment explanation
Indices: 1521867--1522017 Score: 302
Period size: 72 Copynumber: 2.1 Consensus size: 72
1521857 TTCCATGATG
1521867 TCATAAATCAGGAATAATTCATATTTTTCGATGAAAAGCATAATCGGAAAACATATAACATGTTG
1 TCATAAATCAGGAATAATTCATATTTTTCGATGAAAAGCATAATCGGAAAACATATAACATGTTG
1521932 CCAAGGT
66 CCAAGGT
1521939 TCATAAATCAGGAATAATTCATATTTTTCGATGAAAAGCATAATCGGAAAACATATAACATGTTG
1 TCATAAATCAGGAATAATTCATATTTTTCGATGAAAAGCATAATCGGAAAACATATAACATGTTG
1522004 CCAAGGT
66 CCAAGGT
1522011 TCATAAA
1 TCATAAA
1522018 CCCGTAAATC
Statistics
Matches: 79, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
72 79 1.00
ACGTcount: A:0.42, C:0.14, G:0.15, T:0.29
Consensus pattern (72 bp):
TCATAAATCAGGAATAATTCATATTTTTCGATGAAAAGCATAATCGGAAAACATATAACATGTTG
CCAAGGT
Found at i:1521981 original size:37 final size:37
Alignment explanation
Indices: 1521868--1521981 Score: 96
Period size: 37 Copynumber: 3.1 Consensus size: 37
1521858 TCCATGATGT
1521868 CATAAATCAGGAATAATTCATATTTTTCGATGAAAAG
1 CATAAATCAGGAATAATTCATATTTTTCGATGAAAAG
*** * * *
1521905 CAT-AATC-GGAA-AA--CATATAACAT-GTTGCCAAGG
1 CATAAATCAGGAATAATTCATAT-TTTTCGATG-AAAAG
1521938 TTCATAAATCAGGAATAATTCATATTTTTCGATGAAAAG
1 --CATAAATCAGGAATAATTCATATTTTTCGATGAAAAG
1521977 CATAA
1 CATAA
1521982 TCGGAAAACA
Statistics
Matches: 55, Mismatches: 12, Indels: 20
0.63 0.14 0.23
Matches are distributed among these distances:
32 8 0.15
33 4 0.07
34 2 0.04
35 7 0.13
36 8 0.15
37 12 0.22
38 2 0.04
39 4 0.07
40 8 0.15
ACGTcount: A:0.43, C:0.13, G:0.14, T:0.30
Consensus pattern (37 bp):
CATAAATCAGGAATAATTCATATTTTTCGATGAAAAG
Found at i:1524510 original size:24 final size:25
Alignment explanation
Indices: 1524477--1524531 Score: 78
Period size: 24 Copynumber: 2.3 Consensus size: 25
1524467 GGTTGGATCG
* *
1524477 GGTC-AATGGGTCTGGTC-AAATTA
1 GGTCAAATGGGTCGGGTCAAAACTA
1524500 GGTCAAATGGGTCGGGTCAAAACTA
1 GGTCAAATGGGTCGGGTCAAAACTA
1524525 GGTCAAA
1 GGTCAAA
1524532 CTGCCCCAAC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
23 4 0.14
24 12 0.43
25 12 0.43
ACGTcount: A:0.31, C:0.15, G:0.31, T:0.24
Consensus pattern (25 bp):
GGTCAAATGGGTCGGGTCAAAACTA
Found at i:1525736 original size:34 final size:34
Alignment explanation
Indices: 1525693--1525761 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
1525683 TTATATATTG
1525693 AACTATGTGAAGCCTAATATAAGTTGGATATGAA
1 AACTATGTGAAGCCTAATATAAGTTGGATATGAA
1525727 AACTATGTGAAGCCTAATATAAGTTGGATATGAA
1 AACTATGTGAAGCCTAATATAAGTTGGATATGAA
1525761 A
1 A
1525762 CAAGCTCTGA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.42, C:0.09, G:0.20, T:0.29
Consensus pattern (34 bp):
AACTATGTGAAGCCTAATATAAGTTGGATATGAA
Found at i:1530097 original size:25 final size:25
Alignment explanation
Indices: 1530059--1530122 Score: 101
Period size: 25 Copynumber: 2.6 Consensus size: 25
1530049 TTGTAACATG
* * *
1530059 AATAACATGGAATGCCATATTAATT
1 AATAACATGCAATGCCACATGAATT
1530084 AATAACATGCAATGCCACATGAATT
1 AATAACATGCAATGCCACATGAATT
1530109 AATAACATGCAATG
1 AATAACATGCAATG
1530123 TCACTTAATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.45, C:0.16, G:0.12, T:0.27
Consensus pattern (25 bp):
AATAACATGCAATGCCACATGAATT
Found at i:1530900 original size:44 final size:44
Alignment explanation
Indices: 1530804--1530913 Score: 150
Period size: 44 Copynumber: 2.5 Consensus size: 44
1530794 CAGATTGATG
*
1530804 CTGATTCAACTCCTT-TCGTGAAAGATCAAGTGAAAGGATTCCTA
1 CTGATCCAACTCCTTCT-GTGAAAGATCAAGTGAAAGGATTCCTA
* **
1530848 TTGATCCAACTCCTTCTGTGAAAGATCAAGTGAAAGGATTGTTA
1 CTGATCCAACTCCTTCTGTGAAAGATCAAGTGAAAGGATTCCTA
* *
1530892 CTGGTCCAACTCATTCTGTGAA
1 CTGATCCAACTCCTTCTGTGAA
1530914 GAATCAAAGC
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
44 57 0.98
45 1 0.02
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31
Consensus pattern (44 bp):
CTGATCCAACTCCTTCTGTGAAAGATCAAGTGAAAGGATTCCTA
Found at i:1531339 original size:46 final size:46
Alignment explanation
Indices: 1531286--1531417 Score: 158
Period size: 46 Copynumber: 2.9 Consensus size: 46
1531276 CAAAATACCG
* * * * *
1531286 ACGCTGATTTACCTCATTCTGTGATAGAATTGAGCAAAATAAT-GTT
1 ACGCTGATTCAACTCCTTCTGTGA-AGAATCGAGCAAAAGAATGGTT
* * *
1531332 ACGCTGATCCAACTCCTTCTGTGAAGGATCGAGCAAAAGATTGGTT
1 ACGCTGATTCAACTCCTTCTGTGAAGAATCGAGCAAAAGAATGGTT
* *
1531378 ATGTTGATTCAACTCCTTCTGTGAAGAATCGAGCAAAAGA
1 ACGCTGATTCAACTCCTTCTGTGAAGAATCGAGCAAAAGA
1531418 TTAACATTGA
Statistics
Matches: 73, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
45 14 0.19
46 59 0.81
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30
Consensus pattern (46 bp):
ACGCTGATTCAACTCCTTCTGTGAAGAATCGAGCAAAAGAATGGTT
Found at i:1531443 original size:43 final size:45
Alignment explanation
Indices: 1531302--1531444 Score: 137
Period size: 46 Copynumber: 3.2 Consensus size: 45
1531292 ATTTACCTCA
* * * * **
1531302 TTCTGTGATAGAATTGAGCAAAATAATGTTACGCTGATCCAACTCC
1 TTCTGTGA-AGAATCGAGCAAAAGATTGTAACATTGATCCAACTCC
* * ** *
1531348 TTCTGTGAAGGATCGAGCAAAAGATTGGTTATGTTGATTCAACTCC
1 TTCTGTGAAGAATCGAGCAAAAGATT-GTAACATTGATCCAACTCC
*
1531394 TTCTGTGAAGAATCGAGCAAAAGA-T-TAACATTGATCCACCTCC
1 TTCTGTGAAGAATCGAGCAAAAGATTGTAACATTGATCCAACTCC
*
1531437 GTCTGTGA
1 TTCTGTGA
1531445 TGAAATCAAG
Statistics
Matches: 82, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
43 20 0.24
45 15 0.18
46 47 0.57
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30
Consensus pattern (45 bp):
TTCTGTGAAGAATCGAGCAAAAGATTGTAACATTGATCCAACTCC
Found at i:1532702 original size:22 final size:23
Alignment explanation
Indices: 1532677--1532748 Score: 71
Period size: 22 Copynumber: 3.3 Consensus size: 23
1532667 TGAACCCTCA
1532677 TTTTCATTTTCTTTTCTTTTTCT
1 TTTTCATTTTCTTTTCTTTTTCT
** *
1532700 TTTTC-TTACCTTTTCTTTTTAT
1 TTTTCATTTTCTTTTCTTTTTCT
1532722 TTTTC-TTTT-TATTT-TTTTTCT
1 TTTTCATTTTCT-TTTCTTTTTCT
*
1532743 TCTTCA
1 TTTTCA
1532749 AGCATAATAT
Statistics
Matches: 40, Mismatches: 7, Indels: 5
0.77 0.13 0.10
Matches are distributed among these distances:
21 11 0.28
22 24 0.60
23 5 0.12
ACGTcount: A:0.07, C:0.17, G:0.00, T:0.76
Consensus pattern (23 bp):
TTTTCATTTTCTTTTCTTTTTCT
Found at i:1532703 original size:17 final size:17
Alignment explanation
Indices: 1532677--1532737 Score: 61
Period size: 16 Copynumber: 3.6 Consensus size: 17
1532667 TGAACCCTCA
*
1532677 TTTTCATTTTCTTTTCT
1 TTTTCTTTTTCTTTTCT
* *
1532694 TTTTCTTTTTC-TTACC
1 TTTTCTTTTTCTTTTCT
*
1532710 TTTTCTTTTTATTTTTCT
1 TTTTCTTTTT-CTTTTCT
*
1532728 TTTTATTTTT
1 TTTTCTTTTT
1532738 TTTCTTCTTC
Statistics
Matches: 35, Mismatches: 7, Indels: 3
0.78 0.16 0.07
Matches are distributed among these distances:
16 13 0.37
17 10 0.29
18 12 0.34
ACGTcount: A:0.07, C:0.15, G:0.00, T:0.79
Consensus pattern (17 bp):
TTTTCTTTTTCTTTTCT
Found at i:1532705 original size:6 final size:6
Alignment explanation
Indices: 1532677--1532746 Score: 58
Period size: 6 Copynumber: 12.2 Consensus size: 6
1532667 TGAACCCTCA
* * * *
1532677 TTTTCA TTTTC- TTTTCT TTTTCT TTTTC- -TTACC TTTTCT TTTTAT
1 TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT
*
1532722 TTTTCT TTTTAT TTTT-T TTCTTCT T
1 TTTTCT TTTTCT TTTTCT TT-TTCT T
1532747 CAAGCATAAT
Statistics
Matches: 53, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
4 3 0.06
5 8 0.15
6 40 0.75
7 2 0.04
ACGTcount: A:0.06, C:0.16, G:0.00, T:0.79
Consensus pattern (6 bp):
TTTTCT
Found at i:1544082 original size:23 final size:22
Alignment explanation
Indices: 1544040--1544082 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
1544030 ACTCGAATGC
*
1544040 TTCTTTTTCTCCTCTGATTTGT
1 TTCTTTTTCTCCCCTGATTTGT
*
1544062 TTCTTTTATCTCCCCTTATTT
1 TTCTTTT-TCTCCCCTGATTT
1544083 TCATGCTGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 7 0.39
23 11 0.61
ACGTcount: A:0.07, C:0.26, G:0.05, T:0.63
Consensus pattern (22 bp):
TTCTTTTTCTCCCCTGATTTGT
Found at i:1544493 original size:3 final size:3
Alignment explanation
Indices: 1544469--1544515 Score: 60
Period size: 3 Copynumber: 15.7 Consensus size: 3
1544459 TTGGGCTTGT
* *
1544469 ATA A-A ATA ATA AAA ATA TATA ATA ATA ATA ATA ATA TTA ATA ATA
1 ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA
1544514 AT
1 AT
1544516 TATTATTATT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
2 2 0.05
3 33 0.87
4 3 0.08
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:1555935 original size:24 final size:22
Alignment explanation
Indices: 1555901--1555944 Score: 61
Period size: 24 Copynumber: 1.9 Consensus size: 22
1555891 ATTATTCGTA
*
1555901 ATTTCATTTTTTTCATCATTTTTC
1 ATTTCAATTTTTT--TCATTTTTC
1555925 ATTTCAATTTTTTTCATTTT
1 ATTTCAATTTTTTTCATTTT
1555945 AGGAACATGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 7 0.37
24 12 0.63
ACGTcount: A:0.18, C:0.14, G:0.00, T:0.68
Consensus pattern (22 bp):
ATTTCAATTTTTTTCATTTTTC
Found at i:1561603 original size:23 final size:23
Alignment explanation
Indices: 1561577--1561621 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
1561567 CGAGGCAAGG
*
1561577 AAAAATTGTAAAAGTAAACAAAT
1 AAAAATTATAAAAGTAAACAAAT
* *
1561600 AAAAATTATTAAGGTAAACAAA
1 AAAAATTATAAAAGTAAACAAA
1561622 AGTGTTGAGT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.64, C:0.04, G:0.09, T:0.22
Consensus pattern (23 bp):
AAAAATTATAAAAGTAAACAAAT
Found at i:1569166 original size:23 final size:23
Alignment explanation
Indices: 1569140--1569185 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
1569130 AATAATCAAG
*
1569140 ATAAA-TATAAATATACCATTAAA
1 ATAAATTATAAACA-ACCATTAAA
*
1569163 ATAAATTTTAAACAACCATTAAA
1 ATAAATTATAAACAACCATTAAA
1569186 CCAACCACCA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.59, C:0.11, G:0.00, T:0.30
Consensus pattern (23 bp):
ATAAATTATAAACAACCATTAAA
Found at i:1578028 original size:23 final size:22
Alignment explanation
Indices: 1577999--1578062 Score: 65
Period size: 23 Copynumber: 2.8 Consensus size: 22
1577989 CATCTCGTAT
* *
1577999 AAATGCAGCGAAGTGGCACGTAG
1 AAATGCA-CGAAGTGCCACATAG
* *
1578022 AATTGCACTGAAGTGCCTCATAG
1 AAATGCAC-GAAGTGCCACATAG
1578045 AAATGCACCGAAGTGCCA
1 AAATGCA-CGAAGTGCCA
1578063 TATAAAACGT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
22 1 0.03
23 31 0.94
24 1 0.03
ACGTcount: A:0.34, C:0.22, G:0.27, T:0.17
Consensus pattern (22 bp):
AAATGCACGAAGTGCCACATAG
Found at i:1581956 original size:20 final size:20
Alignment explanation
Indices: 1581931--1581971 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
1581921 TACTCTAGGA
1581931 AACTATAATGAGGTATTTAT
1 AACTATAATGAGGTATTTAT
1581951 AACTATAATGAGGTATTTAT
1 AACTATAATGAGGTATTTAT
1581971 A
1 A
1581972 GTGGGAATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.41, C:0.05, G:0.15, T:0.39
Consensus pattern (20 bp):
AACTATAATGAGGTATTTAT
Found at i:1585783 original size:20 final size:20
Alignment explanation
Indices: 1585754--1585792 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
1585744 TTTCCACCAC
*
1585754 ATGCAACTATATGCTCCTAA
1 ATGCAACTATATGATCCTAA
*
1585774 ATGCATCTATATGATCCTA
1 ATGCAACTATATGATCCTA
1585793 TATGAGCTCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.23, G:0.10, T:0.33
Consensus pattern (20 bp):
ATGCAACTATATGATCCTAA
Found at i:1589336 original size:169 final size:171
Alignment explanation
Indices: 1589057--1589396 Score: 666
Period size: 169 Copynumber: 2.0 Consensus size: 171
1589047 TCATACTAGA
1589057 TTTGAACTCTAATGTGCCTTTCAAAAACAAAATCAAGCTCTGATTTGTACTAACAAAGATCAAAC
1 TTTGAACTCTAATGTGCCTTTCAAAAACAAAATCAAGCTCTGATTTGTACTAACAAAGATCAAAC
1589122 ACAACTTAAATTATCCTAGAGAAAACAGGAGAAATTAGCAGACCTGGTTTGTTGTGATGAGGTAC
66 ACAACTTAAATTATCCTAGAGAAAACAGGAGAAATTAGCAGACCTGGTTTGTTGTGATGAGGTAC
1589187 AAGTG-AACCC-GTTAGTCCACCGACAAACCACAGTGAAAT
131 AAGTGAAACCCGGTTAGTCCACCGACAAACCACAGTGAAAT
1589226 TTTGAACTCTAATGTGCCTTTCAAAAACAAAATCAAGCTCTGATTTGTACTAACAAAGATCAAAC
1 TTTGAACTCTAATGTGCCTTTCAAAAACAAAATCAAGCTCTGATTTGTACTAACAAAGATCAAAC
1589291 ACAACTTAAATTATCCTAGAGAAAACAGGAGAAATTAGCAGACCTGGTTTGTTGTGATGAGGTAC
66 ACAACTTAAATTATCCTAGAGAAAACAGGAGAAATTAGCAGACCTGGTTTGTTGTGATGAGGTAC
1589356 AAGTGAAACCCGGTTAGTCCACCGACAAACCACAGTGAAAT
131 AAGTGAAACCCGGTTAGTCCACCGACAAACCACAGTGAAAT
1589397 GAAACAGTAT
Statistics
Matches: 169, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
169 135 0.80
170 5 0.03
171 29 0.17
ACGTcount: A:0.39, C:0.19, G:0.17, T:0.25
Consensus pattern (171 bp):
TTTGAACTCTAATGTGCCTTTCAAAAACAAAATCAAGCTCTGATTTGTACTAACAAAGATCAAAC
ACAACTTAAATTATCCTAGAGAAAACAGGAGAAATTAGCAGACCTGGTTTGTTGTGATGAGGTAC
AAGTGAAACCCGGTTAGTCCACCGACAAACCACAGTGAAAT
Found at i:1591088 original size:97 final size:97
Alignment explanation
Indices: 1590922--1591115 Score: 388
Period size: 97 Copynumber: 2.0 Consensus size: 97
1590912 TCCCCATTAA
1590922 CCTAAATCCATGAATCCTAAAGCATCCTTCAAAGTTCTAACTTTCATTTATCTCCAACCTAAGTT
1 CCTAAATCCATGAATCCTAAAGCATCCTTCAAAGTTCTAACTTTCATTTATCTCCAACCTAAGTT
1590987 TACGAATTATGTAGGGTACCATCTTGAAATAT
66 TACGAATTATGTAGGGTACCATCTTGAAATAT
1591019 CCTAAATCCATGAATCCTAAAGCATCCTTCAAAGTTCTAACTTTCATTTATCTCCAACCTAAGTT
1 CCTAAATCCATGAATCCTAAAGCATCCTTCAAAGTTCTAACTTTCATTTATCTCCAACCTAAGTT
1591084 TACGAATTATGTAGGGTACCATCTTGAAATAT
66 TACGAATTATGTAGGGTACCATCTTGAAATAT
1591116 ACTTTGCAAA
Statistics
Matches: 97, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
97 97 1.00
ACGTcount: A:0.33, C:0.23, G:0.10, T:0.34
Consensus pattern (97 bp):
CCTAAATCCATGAATCCTAAAGCATCCTTCAAAGTTCTAACTTTCATTTATCTCCAACCTAAGTT
TACGAATTATGTAGGGTACCATCTTGAAATAT
Found at i:1596234 original size:60 final size:60
Alignment explanation
Indices: 1596141--1596269 Score: 161
Period size: 60 Copynumber: 2.1 Consensus size: 60
1596131 TCATGTGATT
* * * * * *
1596141 ATTTTATAACTTTTAATAGTTGAAATACTCAACAAATCAATACCTTATAGTCGGAATATC
1 ATTTTGTAACTTTGAATAGTCGAAATACTCAACAAAACAATACCATATAGTCGGAAGATC
* *
1596201 ATTTTGTAACTTTGAATAGTCG-AATGACTCAACAAAACAATATCATATAGTTGGAAGATC
1 ATTTTGTAACTTTGAATAGTCGAAAT-ACTCAACAAAACAATACCATATAGTCGGAAGATC
1596261 ATTTATGTA
1 ATTT-TGTA
1596270 TTTTACTCTA
Statistics
Matches: 59, Mismatches: 8, Indels: 3
0.84 0.11 0.04
Matches are distributed among these distances:
59 3 0.05
60 52 0.88
61 4 0.07
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.36
Consensus pattern (60 bp):
ATTTTGTAACTTTGAATAGTCGAAATACTCAACAAAACAATACCATATAGTCGGAAGATC
Found at i:1598746 original size:23 final size:23
Alignment explanation
Indices: 1598702--1598746 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
1598692 AACATATTAG
* * **
1598702 GTAGCGCTTATATATTGTAATAA
1 GTAGCGATTATATAATAAAATAA
1598725 GTAGCGATTATATAATAAAATA
1 GTAGCGATTATATAATAAAATA
1598747 GACATTTAAC
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.42, C:0.07, G:0.16, T:0.36
Consensus pattern (23 bp):
GTAGCGATTATATAATAAAATAA
Found at i:1598808 original size:87 final size:87
Alignment explanation
Indices: 1598662--1598824 Score: 263
Period size: 87 Copynumber: 1.9 Consensus size: 87
1598652 TATGTTATAT
* * * *
1598662 CATTTAACCGAAAATATTATCAAGTATAATAACATATTAGGTAGCGCTTATATATTGTAATAAGT
1 CATTTAACCGAAAATATTATCAAGTACAATAACATATTAGATAACGCTTATATAATGTAATAAGT
1598727 AGCGATTATATAATAAAATAGA
66 AGCGATTATATAATAAAATAGA
* *
1598749 CATTTAACCGGAAATATTATCAAGTACAATAACATATTAGATAACGCTTATATAATGTAATAGGT
1 CATTTAACCGAAAATATTATCAAGTACAATAACATATTAGATAACGCTTATATAATGTAATAAGT
*
1598814 AGCGCTTATAT
66 AGCGATTATAT
1598825 TGACCTATTT
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
87 69 1.00
ACGTcount: A:0.43, C:0.11, G:0.13, T:0.33
Consensus pattern (87 bp):
CATTTAACCGAAAATATTATCAAGTACAATAACATATTAGATAACGCTTATATAATGTAATAAGT
AGCGATTATATAATAAAATAGA
Found at i:1599300 original size:25 final size:25
Alignment explanation
Indices: 1599271--1599323 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
1599261 AATAACTGAC
1599271 CGTAACTGTTATGAACGTTGGTATT
1 CGTAACTGTTATGAACGTTGGTATT
1599296 CGTAACTGTTATGAACGTTGGTATT
1 CGTAACTGTTATGAACGTTGGTATT
1599321 CGT
1 CGT
1599324 CACAGAGGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.23, C:0.13, G:0.25, T:0.40
Consensus pattern (25 bp):
CGTAACTGTTATGAACGTTGGTATT
Found at i:1599768 original size:201 final size:198
Alignment explanation
Indices: 1599423--1600592 Score: 1296
Period size: 201 Copynumber: 5.8 Consensus size: 198
1599413 CGTTATTTAC
** * *
1599423 AAGTATCGACACAAATCTAAAACGTGTCGATACATTATGTTCACCTATTTTCTCATAAAACCGGT
1 AAGTATCGACACAAATCTAAAA-GTGTCGATACATTATGTAGACCTATTCTCACATAAAACCGGT
* * * * *
1599488 ACATTTATATCGGTTACATTGTAAATTTACCTATTACAATATAATTATCGATTTAGATATTTTTG
65 ATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGATTTCGATGTTTTTG
* * * * *
1599553 GGATCGATACTTTTTAAAAAATGTATCGACACTATATGCTTGCAACCCTTTTAGCTTTAATTTTG
130 GGATCGATACTTTTT-AAAAATGTATCGACACTTTATGCTTGC-ACCCTTTTGGCATTCATTCTG
*
1599618 GAGAAA
193 GACAAA
** * * *
1599624 AAGTATCGACACAAATCTAAAACGTGTCGATACATTATGTTCACCTATTTTAACATAAAACCAGT
1 AAGTATCGACACAAATCTAAAA-GTGTCGATACATTATGTAGACCTATTCTCACATAAAACCGGT
* *
1599689 ATATTTATA-CGAGTTACATTGTAAATTTACCTATTACATTATAATTATTGATTTTGATGTTTTT
65 ATATTTATACCG-GTTACATTGTAAATTTACCTATTACATTATAATTATCGATTTCGATGTTTTT
* * *
1599753 GGAATCGATACTTTTTTATAAATGTATCGACACTTTATTCGTT-CACCCTTTTGAGCATTCATTC
129 GGGATCGATAC-TTTTTAAAAATGTATCGACACTTTATGC-TTGCACCCTTTTG-GCATTCATTC
1599817 TGGACAAA
191 TGGACAAA
* * * * *
1599825 ACGTATCGACACATCAT-TCAAAAGTGTCGACACATTATGTAGACATATTCTGACATAAAACCGG
1 AAGTATCGACACA-AATCT-AAAAGTGTCGATACATTATGTAGACCTATTCTCACATAAAACCGG
* ** * * * * *
1599889 TATATTTATACCGGTTATATTACAAAATTACCTATTATATTATATTTATGGATTTCGATGTTTTA
64 TATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGATTTCGATGTTTTT
* * ** * *
1599954 GGGATCGATACTGTTTAAACATGTATCGACACTTTATGAGTGCACCCTTTTTGG-ATTTTCCTTG
129 GGGATCGATACTTTTTAAAAATGTATCGACACTTTATGCTTGCACCC-TTTTGGCA--TTCATTC
*
1600018 TGGACCAA
191 TGGACAAA
* * * * * ** * *
1600026 AAGTATCGACACAAATTCCACAAGTGTCGATACATTATGTATATCTATTTTGTCAAAAAATCGGT
1 AAGTATCGACACAAA-TCTAAAAGTGTCGATACATTATGTAGACCTATTCTCACATAAAACCGGT
* * *
1600091 TTATTTATACCGGTTACATTTTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTTTTG
65 ATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGATTTCGATGTTTTTG
* * * * *
1600156 GGATCGATGCTTTTTATAAATTTATCTACACTTTATG-TGTTCACCCTTTTGGCATTCATTCTGG
130 GGATCGATACTTTTTAAAAATGTATCGACACTTTATGCT-TGCACCCTTTTGGCATTCATTCTGG
1600220 ACAAA
194 ACAAA
* * * * *
1600225 AAATATTGACACAACAT-TCAAAAGTGTCGACACATTATGTAGACCTATTCTCACATAAAACTGA
1 AAGTATCGACACAA-ATCT-AAAAGTGTCGATACATTATGTAGACCTATTCTCACATAAAACCGG
* ** * * *
1600289 TATATTTATATCC-GTTATATTACAAAATTATCTATTACATTATAATTAT-GAGTTTCTATGTTT
64 TATATTTATA-CCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGA-TTTCGATGTTT
** *
1600352 TTGGGATCGATACTTTTTTAAAAA-GTATCGACACTTTATGGGTGCACCCTTTTTGGGCATTCCT
127 TTGGGATCGATAC-TTTTTAAAAATGTATCGACACTTTATGCTTGCACCC-TTTT-GGCATTCAT
1600416 TCTGGACAAA
189 TCTGGACAAA
* * *
1600426 CAGTATCGACACAAATTCCAAAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAACCGGT
1 AAGTATCGACACAAA-TCTAAAAGTGTCGATACATTATGTAGACCTATTCTCACATAAAACCGGT
* * * * * *
1600491 TTAGTTATACTGGTTACATTGTAAATTTACCTATTACATTATATTTATGGATTTCGATGTTTATG
65 ATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGATTTCGATGTTTTTG
*
1600556 GGATCGATACTTTTTAAAACTGTATCGACACTTTATG
130 GGATCGATACTTTTTAAAAATGTATCGACACTTTATG
1600593 GGAAACTTTA
Statistics
Matches: 814, Mismatches: 127, Indels: 56
0.82 0.13 0.06
Matches are distributed among these distances:
198 1 0.00
199 143 0.18
200 73 0.09
201 580 0.71
202 17 0.02
ACGTcount: A:0.32, C:0.16, G:0.13, T:0.39
Consensus pattern (198 bp):
AAGTATCGACACAAATCTAAAAGTGTCGATACATTATGTAGACCTATTCTCACATAAAACCGGTA
TATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGATTTCGATGTTTTTGG
GATCGATACTTTTTAAAAATGTATCGACACTTTATGCTTGCACCCTTTTGGCATTCATTCTGGAC
AAA
Found at i:1600362 original size:400 final size:398
Alignment explanation
Indices: 1599426--1600592 Score: 1460
Period size: 400 Copynumber: 2.9 Consensus size: 398
1599416 TATTTACAAG
* ** * *
1599426 TATCGACACAA-A-TCTAAAACGTGTCGATACATTATGTTCACCTATTTTCTCATAAAACCGGTA
1 TATCGACACAACATTC-AAAA-GTGTCGACACATTATGTAGACCTATTCTCACATAAAACCGGTA
* * * ** * * * *
1599489 CATTTATATCGGTTACATTGTAAATTTACCTATTACAATATAATTATCGA-TTTAGATATTTTTG
64 TATTTATATCCGTTATATTACAAAATTACCTATTACATTATAATTAT-GAGTTTCGATGTTTTTG
* ** * ** *
1599553 GGATCGATACTTTTTAAAAAATGTATCGACACTATATGCTTGCAACCC-TTTTAGCTTTAATTTT
128 GGATCGATACTTTTT--AAAATGTATCGACACTTTATGAGTGC-ACCCTTTTTGGCTTTCCTTCT
* * *
1599617 GGAGAAAAAGTATCGACACAAA-TCTAAAACGTGTCGATACATTATGT-TCACCTATTTTAACAT
190 GGA-CAAAAGTATCGACACAAATTCCAAAA-GTGTCGATACATTATGTAT-ACCTATTTTATCAT
* * * *
1599680 AAAACCAGTATATTTATA-CGAGTTACATTGTAAATTTACCTATTACATTATAATTATTGATTTT
252 AAAACCGGTTTATTTATACCG-GTTACATTGTAAATTTACCTATTACATTATAATTA-TGGTTTC
*
1599744 GATGTTTTTGGAATCGATACTTTTTTATAAATGTATCGACACTTTAT-TCGTTCACCCTTTTGAG
315 GATGTTTTTGGGATCGATAC-TTTTTATAAATGTATCGACACTTTATGTCGTTCACCCTTTTGAG
**
1599808 CATTCATTCTGGACAAAACG
379 CATTCATTCTGGACAAAAAA
* * *
1599828 TATCGACACATCATTCAAAAGTGTCGACACATTATGTAGACATATTCTGACATAAAACCGGTATA
1 TATCGACACAACATTCAAAAGTGTCGACACATTATGTAGACCTATTCTCACATAAAACCGGTATA
* * *
1599893 TTTATA-CCGGTTATATTACAAAATTACCTATTATATTATATTTATG-GATTTCGATGTTTTAGG
66 TTTATATCC-GTTATATTACAAAATTACCTATTACATTATAATTATGAG-TTTCGATGTTTTTGG
* * *
1599956 GATCGATACTGTTTAAACATGTATCGACACTTTATGAGTGCACCCTTTTTGGATTTTCCTTGTGG
129 GATCGATACTTTTTAAA-ATGTATCGACACTTTATGAGTGCACCCTTTTTGG-CTTTCCTTCTGG
* * * *
1600021 ACCAAAAGTATCGACACAAATTCCACAAGTGTCGATACATTATGTATATCTATTTTGTCAAAAAA
192 A-CAAAAGTATCGACACAAATTCCAAAAGTGTCGATACATTATGTATACCTATTTTATCATAAAA
* *
1600086 TCGGTTTATTTATACCGGTTACATTTTAAATTTACCTATTACATTATAATTATCGGTTTCGATGT
256 CCGGTTTATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTAT-GGTTTCGATGT
* * *
1600151 TTTTGGGATCGATGCTTTTTATAAATTTATCTACACTTTATGT-GTTCACCCTTTTG-GCATTCA
320 TTTTGGGATCGATACTTTTTATAAATGTATCGACACTTTATGTCGTTCACCCTTTTGAGCATTCA
1600214 TTCTGGACAAAAAA
385 TTCTGGACAAAAAA
* * *
1600228 TATTGACACAACATTCAAAAGTGTCGACACATTATGTAGACCTATTCTCACATAAAACTGATATA
1 TATCGACACAACATTCAAAAGTGTCGACACATTATGTAGACCTATTCTCACATAAAACCGGTATA
* *
1600293 TTTATATCCGTTATATTACAAAATTATCTATTACATTATAATTATGAGTTTCTATGTTTTTGGGA
66 TTTATATCCGTTATATTACAAAATTACCTATTACATTATAATTATGAGTTTCGATGTTTTTGGGA
* * *
1600358 TCGATACTTTTTTAAAAAGTATCGACACTTTATGGGTGCACCCTTTTTGGGCATTCCTTCTGGAC
131 TCGATAC-TTTTTAAAATGTATCGACACTTTATGAGTGCACCCTTTTT-GGCTTTCCTTCTGGAC
* * *
1600423 AAACAGTATCGACACAAATTCCAAAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAACC
194 AAA-AGTATCGACACAAATTCCAAAAGTGTCGATACATTATGTATACCTATTTTATCATAAAACC
* * *
1600488 GGTTTAGTTATACTGGTTACATTGTAAATTTACCTATTACATTATATTTATGGATTTCGATGTTT
258 GGTTTATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATGG-TTTCGATGTTT
*
1600553 ATGGGATCGATACTTTTTA-AAACTGTATCGACACTTTATG
322 TTGGGATCGATACTTTTTATAAA-TGTATCGACACTTTATG
1600593 GGAAACTTTA
Statistics
Matches: 664, Mismatches: 81, Indels: 42
0.84 0.10 0.05
Matches are distributed among these distances:
399 9 0.01
400 331 0.50
401 77 0.12
402 232 0.35
403 13 0.02
404 2 0.00
ACGTcount: A:0.32, C:0.16, G:0.13, T:0.39
Consensus pattern (398 bp):
TATCGACACAACATTCAAAAGTGTCGACACATTATGTAGACCTATTCTCACATAAAACCGGTATA
TTTATATCCGTTATATTACAAAATTACCTATTACATTATAATTATGAGTTTCGATGTTTTTGGGA
TCGATACTTTTTAAAATGTATCGACACTTTATGAGTGCACCCTTTTTGGCTTTCCTTCTGGACAA
AAGTATCGACACAAATTCCAAAAGTGTCGATACATTATGTATACCTATTTTATCATAAAACCGGT
TTATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATGGTTTCGATGTTTTTGG
GATCGATACTTTTTATAAATGTATCGACACTTTATGTCGTTCACCCTTTTGAGCATTCATTCTGG
ACAAAAAA
Found at i:1600523 original size:601 final size:603
Alignment explanation
Indices: 1599423--1600592 Score: 1562
Period size: 601 Copynumber: 1.9 Consensus size: 603
1599413 CGTTATTTAC
* *
1599423 AAGTATCGACACAAATCTAAAACGTGTCGATACATTATGTTCACCTATTTTCTCATAAAACCGGT
1 AAGTATCGACACAAATCCAAAACGTGTCGATACATTATGTTCACCTATTTTCTCAAAAAACCGGT
*
1599488 ACATTTATATCGGTTACATTGTAAATTTACCTATTACAATATAATTATCGATTTAGATATTTTTG
66 ACATTTATACCGGTTACATTGTAAATTTACCTATTACAATATAATTATCGATTTAGATATTTTTG
* *
1599553 GGATCGATACTTTTTAAAAAATGTATCGACACTATATGCTTGCAACCCTTTTAGCTTTAATTTTG
131 GGATCGATACTTTTTAAAAAATGTATCGACACTATATGCTTGCAACCCTTTTAGCATTAATTCTG
* * * * *
1599618 GAGAAAAAGTATCGACACAAATCTAAAACGTGTCGATACATTATGTTCACCTATTTTAACATAAA
196 GACAAAAAATATCGACACAAATCTAAAACGTGTCGACACATTATGTACACCTATTCTAACATAAA
** *
1599683 ACCAGTATATTTATACGAGTTACATTGTAAATTTACCTATTACATTATAATTATTGATTTTGATG
261 ACCAGTATATTTATACGAGTTACATTACAAAATTACCTATTACATTATAATTATTGATTTTGATG
* * *
1599748 TTTTTGGAATCGATACTTTTTTATAAATGTATCGACACTTTATTCGTTCACCCTTTTGAGCATTC
326 TTTTTGGAATCGATACTTTTTTATAAAAGTATCGACACTTTATGCGTGCACCCTTTTGAGCATTC
* *
1599813 ATTCTGGACAAAACGTATCGACACATCATTCAAAAGTGTCGACACATTATGTAGACATATTCTGA
391 ATTCTGGACAAAACGTATCGACACATAATTCAAAAGTGTCGACACATTATGTAGACATATTCTCA
* * *
1599878 CATAAAACCGGTATATTTATACCGGTTATATTACAAAATTACCTATTATATTATATTTATGGATT
456 CATAAAACCGGTATAGTTATACCGGTTACATTACAAAATTACCTATTACATTATATTTATGGATT
1599943 TCGATGTTT-TAGGGATCGATACTGTTT-AAACATGTATCGACACTTTATGAGTGCACCCTTTTT
521 TCGATGTTTAT-GGGATCGATACTGTTTAAAAC-TGTATCGACACTTTATGAGTGCACCCTTTTT
1600006 GGATTTTCCTTGTGGACCAA
584 GGATTTTCCTTGTGGACCAA
* * * *
1600026 AAGTATCGACACAAATTCCACAA-GTGTCGATACATTATGTAT-ATCTATTTTGTCAAAAAATCG
1 AAGTATCGACACAAA-TCCAAAACGTGTCGATACATTATGT-TCACCTATTTTCTCAAAAAACCG
** * * * * *
1600089 GTTTATTTATACCGGTTACATTTTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTTT
64 GTACATTTATACCGGTTACATTGTAAATTTACCTATTACAATATAATTATCGATTTAGATATTTT
* * * * * * * *
1600154 TGGGATCGATGCTTTTT-ATAAATTTATCTACACTTTATG-TGTTC-ACCCTTTTGGCATTCATT
129 TGGGATCGATACTTTTTAAAAAATGTATCGACACTATATGCT-TGCAACCCTTTTAGCATTAATT
* * *
1600216 CTGGACAAAAAATATTGACACAACAT-TCAAAA-GTGTCGACACATTATGTAGACCTATTCTCAC
193 CTGGACAAAAAATATCGACACAA-ATCT-AAAACGTGTCGACACATTATGTACACCTATTCTAAC
* * * *
1600279 ATAAAA-CTGATATATTTATATC-CGTTATATTACAAAATTATCTATTACATTATAATTA-TGAG
256 ATAAAACCAG-TATATTTATA-CGAGTTACATTACAAAATTACCTATTACATTATAATTATTGA-
* *
1600341 TTTCT-ATGTTTTTGGGATCGATACTTTTTTA-AAAAGTATCGACACTTTATGGGTGCACCCTTT
318 TTT-TGATGTTTTTGGAATCGATACTTTTTTATAAAAGTATCGACACTTTATGCGTGCACCC-TT
* * *
1600404 TTGGGCATTCCTTCTGGAC-AAACAGTATCGACACA-AATTCCAAAAGTGTCGATACATTATGTA
381 TTGAGCATTCATTCTGGACAAAAC-GTATCGACACATAATT-CAAAAGTGTCGACACATTATGTA
* * * * ** *
1600467 GACCTATTCTCTCATAAAACCGGTTTAGTTATACTGGTTACATTGTAAATTTACCTATTACATTA
444 GACATATTCTCACATAAAACCGGTATAGTTATACCGGTTACATTACAAAATTACCTATTACATTA
*
1600532 TATTTATGGATTTCGATGTTTATGGGATCGATACTTTTTAAAACTGTATCGACACTTTATG
509 TATTTATGGATTTCGATGTTTATGGGATCGATACTGTTTAAAACTGTATCGACACTTTATG
1600593 GGAAACTTTA
Statistics
Matches: 493, Mismatches: 60, Indels: 30
0.85 0.10 0.05
Matches are distributed among these distances:
600 37 0.08
601 295 0.60
602 33 0.07
603 122 0.25
604 6 0.01
ACGTcount: A:0.32, C:0.16, G:0.13, T:0.39
Consensus pattern (603 bp):
AAGTATCGACACAAATCCAAAACGTGTCGATACATTATGTTCACCTATTTTCTCAAAAAACCGGT
ACATTTATACCGGTTACATTGTAAATTTACCTATTACAATATAATTATCGATTTAGATATTTTTG
GGATCGATACTTTTTAAAAAATGTATCGACACTATATGCTTGCAACCCTTTTAGCATTAATTCTG
GACAAAAAATATCGACACAAATCTAAAACGTGTCGACACATTATGTACACCTATTCTAACATAAA
ACCAGTATATTTATACGAGTTACATTACAAAATTACCTATTACATTATAATTATTGATTTTGATG
TTTTTGGAATCGATACTTTTTTATAAAAGTATCGACACTTTATGCGTGCACCCTTTTGAGCATTC
ATTCTGGACAAAACGTATCGACACATAATTCAAAAGTGTCGACACATTATGTAGACATATTCTCA
CATAAAACCGGTATAGTTATACCGGTTACATTACAAAATTACCTATTACATTATATTTATGGATT
TCGATGTTTATGGGATCGATACTGTTTAAAACTGTATCGACACTTTATGAGTGCACCCTTTTTGG
ATTTTCCTTGTGGACCAA
Found at i:1600613 original size:15 final size:15
Alignment explanation
Indices: 1600593--1600632 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
1600583 ACACTTTATG
*
1600593 GGAAACTTTAAGTTT
1 GGAAACTTTAAGTAT
*
1600608 GGAAACTTTATGTAT
1 GGAAACTTTAAGTAT
*
1600623 GAAAACTTTA
1 GGAAACTTTA
1600633 TTGTGGAGAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.38, C:0.07, G:0.17, T:0.38
Consensus pattern (15 bp):
GGAAACTTTAAGTAT
Found at i:1602109 original size:3 final size:3
Alignment explanation
Indices: 1602094--1602135 Score: 66
Period size: 3 Copynumber: 14.0 Consensus size: 3
1602084 ACTTGTTTGG
* *
1602094 ATC ATC ATA ATC ATC ATC ATC ATC ATC ATC ATC ATC TTC ATC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
1602136 GTTTAATTTC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.33, C:0.31, G:0.00, T:0.36
Consensus pattern (3 bp):
ATC
Found at i:1603428 original size:145 final size:141
Alignment explanation
Indices: 1603120--1603433 Score: 386
Period size: 145 Copynumber: 2.2 Consensus size: 141
1603110 TTAGTATAAT
* * * *
1603120 TTAAAA-AAAAATTATATTTTTATAAATAAGATATTTATTTACTTAGAAATATCAGAAAATGACT
1 TTAAAATAAAAATTAAATTTATAAAAATAAGATATTTATTTACTTAGAAATACCAGAAAATGACT
* *
1603184 TCTAGGTGCTTTAAGACAGCCCATTTCTTAATATTAAAAAATAAATAATATTAATAAAATATTTC
66 TCTAGGTGCTTTAAGACAACCCAATTCTTAATATTAAAAAATAAATAATATTAATAAAATATTTC
*
1603249 TCTAAAATTAA
131 TCTAAAAGTAA
*
1603260 TTAAAATAAAGTAATATATAATTTATAAAAAT-AGAATATTTATTTATTTA-AGAATACCAGAAA
1 TTAAAATAAA--AAT-TA-AATTTATAAAAATAAG-ATATTTATTTACTTAGA-AATACCAGAAA
1603323 ATGACTTCTAGGTGCTTTAAGACAACCCAATTCTTAATATTAAAAAATAAATAAATATTAA-AAT
60 ATGACTTCTAGGTGCTTTAAGACAACCCAATTCTTAATATTAAAAAATAAAT-AATATTAATAA-
*
1603387 ATGATTATTTTTCCTAAAAGTAA
123 A--A-TATTTCT-CTAAAAGTAA
* *
1603410 TTTATAT-AAAATTAAATTTATAAA
1 TTAAAATAAAAATTAAATTTATAAA
1603434 TAGGATTTTT
Statistics
Matches: 150, Mismatches: 11, Indels: 21
0.82 0.06 0.12
Matches are distributed among these distances:
140 6 0.04
141 3 0.02
143 3 0.02
144 5 0.03
145 96 0.64
146 11 0.07
147 3 0.02
148 1 0.01
149 8 0.05
150 14 0.09
ACGTcount: A:0.48, C:0.08, G:0.06, T:0.38
Consensus pattern (141 bp):
TTAAAATAAAAATTAAATTTATAAAAATAAGATATTTATTTACTTAGAAATACCAGAAAATGACT
TCTAGGTGCTTTAAGACAACCCAATTCTTAATATTAAAAAATAAATAATATTAATAAAATATTTC
TCTAAAAGTAA
Found at i:1605567 original size:3 final size:3
Alignment explanation
Indices: 1605559--1605637 Score: 78
Period size: 3 Copynumber: 27.7 Consensus size: 3
1605549 GTTTTAATTG
1605559 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA- TAT T-T GT-T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT
* * * *
1605602 TAA TAT CAT TAT TAA TAT T-T TAT TTT TAT T-T TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1605638 CTTTGCATAT
Statistics
Matches: 63, Mismatches: 8, Indels: 10
0.78 0.10 0.12
Matches are distributed among these distances:
2 8 0.13
3 55 0.87
ACGTcount: A:0.32, C:0.01, G:0.01, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:1606074 original size:12 final size:11
Alignment explanation
Indices: 1606057--1606098 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 11
1606047 CTTTGGTACC
*
1606057 AAAAAAGGAGA
1 AAAAAAAGAGA
1606068 AAAAAAAGA-A
1 AAAAAAAGAGA
*
1606078 AAAAATAGAGA
1 AAAAAAAGAGA
1606089 AAAACAAAGA
1 AAAA-AAAGA
1606099 CAGATCAGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
10 9 0.35
11 13 0.50
12 4 0.15
ACGTcount: A:0.79, C:0.02, G:0.17, T:0.02
Consensus pattern (11 bp):
AAAAAAAGAGA
Found at i:1610538 original size:35 final size:35
Alignment explanation
Indices: 1610482--1610553 Score: 108
Period size: 35 Copynumber: 2.1 Consensus size: 35
1610472 TTCGCATCTA
*
1610482 TATTTGCATTCATACAACTTTAATTTAAGTATTTT
1 TATTTGCATTCATACAACTTTAATTTAAGCATTTT
* **
1610517 TATTTGCATTCGTACTGCTTTAATTTAAGCATTTT
1 TATTTGCATTCATACAACTTTAATTTAAGCATTTT
1610552 TA
1 TA
1610554 CATGTATCAA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.28, C:0.12, G:0.08, T:0.51
Consensus pattern (35 bp):
TATTTGCATTCATACAACTTTAATTTAAGCATTTT
Found at i:1611957 original size:11 final size:12
Alignment explanation
Indices: 1611941--1612063 Score: 64
Period size: 14 Copynumber: 10.2 Consensus size: 12
1611931 AGACAAAAAC
1611941 AAAAAAAAG-GA
1 AAAAAAAAGAGA
1611952 AAAAAAAAGAGA
1 AAAAAAAAGAGA
*
1611964 AAATATAGAAAAAGA
1 AAA-A-A-AAAGAGA
1611979 AAAAGAAAA-ATTGA
1 AAAA-AAAAGA--GA
1611993 AAAAATAAA-AG-
1 AAAAA-AAAGAGA
1612004 -AAAAAAAGA-A
1 AAAAAAAAGAGA
* *
1612014 AGACAAAA-AG-
1 AAAAAAAAGAGA
*
1612024 AAATAAAAGAGA
1 AAAAAAAAGAGA
*
1612036 AGAAAAAAGAGA
1 AAAAAAAAGAGA
1612048 AAGGAAAAAAGAGA
1 AA--AAAAAAGAGA
1612062 AA
1 AA
1612064 GAAGAAGAAG
Statistics
Matches: 88, Mismatches: 9, Indels: 27
0.71 0.07 0.22
Matches are distributed among these distances:
9 3 0.03
10 12 0.14
11 16 0.18
12 18 0.20
13 5 0.06
14 25 0.28
15 9 0.10
ACGTcount: A:0.77, C:0.01, G:0.17, T:0.05
Consensus pattern (12 bp):
AAAAAAAAGAGA
Found at i:1611966 original size:20 final size:20
Alignment explanation
Indices: 1611943--1612049 Score: 78
Period size: 21 Copynumber: 5.2 Consensus size: 20
1611933 ACAAAAACAA
1611943 AAAAAAGGAAAAAAAAAGAG
1 AAAAAAGGAAAAAAAAAGAG
1611963 AAAATATA-GAAAAAGAAAA-AG
1 AAAA-A-AGGAAAAA-AAAAGAG
**
1611984 AAAAATTGAAAAAATAAA-AG
1 AAAAAAGGAAAAAA-AAAGAG
*
1612004 AAAAAAAGAAAGACAAAAAGA-
1 AAAAAAGGAAA-A-AAAAAGAG
*
1612025 AATAAAAGAGAAGAAAAAAGAG
1 AA-AAAAG-GAAAAAAAAAGAG
1612047 AAA
1 AAA
1612050 GGAAAAAAGA
Statistics
Matches: 71, Mismatches: 5, Indels: 21
0.73 0.05 0.22
Matches are distributed among these distances:
19 1 0.01
20 25 0.35
21 27 0.38
22 15 0.21
23 3 0.04
ACGTcount: A:0.78, C:0.01, G:0.16, T:0.06
Consensus pattern (20 bp):
AAAAAAGGAAAAAAAAAGAG
Found at i:1611987 original size:5 final size:6
Alignment explanation
Indices: 1611944--1612078 Score: 55
Period size: 6 Copynumber: 21.3 Consensus size: 6
1611934 CAAAAACAAA
* * * *
1611944 AAAAAG GAAAA- AAAAAG AGAAA- ATATAG AAAAAG AAAAAG AAAAATTG
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAA--G
1611992 AAAAA- ATAAAAG AAAAA- AAGAAAG ACAAAAAG AAATAA- AAGAGAAG
1 AAAAAG A-AAAAG AAAAAG AA-AAAG --AAAAAG AAA-AAG AA-A-AAG
* * * *
1612038 AAAAAAG AGAAAGG AAAAAAG AGAAAG AAGAAG AAGAAG AA
1 -AAAAAG A-AAAAG -AAAAAG AAAAAG AAAAAG AAAAAG AA
1612079 GATGAACAAG
Statistics
Matches: 100, Mismatches: 13, Indels: 32
0.69 0.09 0.22
Matches are distributed among these distances:
5 10 0.10
6 57 0.57
7 17 0.17
8 12 0.12
9 4 0.04
ACGTcount: A:0.76, C:0.01, G:0.19, T:0.04
Consensus pattern (6 bp):
AAAAAG
Found at i:1612016 original size:12 final size:13
Alignment explanation
Indices: 1611943--1612066 Score: 81
Period size: 12 Copynumber: 10.2 Consensus size: 13
1611933 ACAAAAACAA
1611943 AAAAAAG-GAAA-
1 AAAAAAGAGAAAG
1611954 AAAAAAGAG-AA-
1 AAAAAAGAGAAAG
* * *
1611965 AATATAGAAAAAG
1 AAAAAAGAGAAAG
*
1611978 -AAAAAGAAAAATTG
1 AAAAAAGAGAAA--G
*
1611992 AAAAAATA-AAAG
1 AAAAAAGAGAAAG
1612004 AAAAAA-AGAAAG
1 AAAAAAGAGAAAG
*
1612016 ACAAAA-AG-AA-
1 AAAAAAGAGAAAG
*
1612026 ATAAAAGAG-AAG
1 AAAAAAGAGAAAG
1612038 AAAAAAGAGAAAGG
1 AAAAAAGAGAAA-G
1612052 AAAAAAGAGAAAG
1 AAAAAAGAGAAAG
1612065 AA
1 AA
1612067 GAAGAAGAAG
Statistics
Matches: 93, Mismatches: 9, Indels: 20
0.76 0.07 0.16
Matches are distributed among these distances:
10 5 0.05
11 22 0.24
12 38 0.41
13 5 0.05
14 17 0.18
15 6 0.06
ACGTcount: A:0.77, C:0.01, G:0.18, T:0.05
Consensus pattern (13 bp):
AAAAAAGAGAAAG
Found at i:1612048 original size:23 final size:20
Alignment explanation
Indices: 1611942--1612049 Score: 87
Period size: 20 Copynumber: 5.2 Consensus size: 20
1611932 GACAAAAACA
1611942 AAAAAAAGGAAA-AAAAAAGAG
1 AAAAAAA-GAAAGAAAAAA-AG
*
1611963 AAAATATAGAAA-AAGAAAAAG
1 AAAA-AAAGAAAGAA-AAAAAG
**
1611984 AAAAATTGAAA-AAATAAAAG
1 AAAAAAAGAAAGAAA-AAAAG
*
1612004 AAAAAAAGAAAGACAAAAAG
1 AAAAAAAGAAAGAAAAAAAG
1612024 AAATAAAAGAGAAGAAAAAAGAG
1 AAA-AAAAGA-AAGAAAAAA-AG
1612047 AAA
1 AAA
1612050 GGAAAAAAGA
Statistics
Matches: 74, Mismatches: 6, Indels: 12
0.80 0.07 0.13
Matches are distributed among these distances:
19 1 0.01
20 30 0.41
21 24 0.32
22 14 0.19
23 5 0.07
ACGTcount: A:0.78, C:0.01, G:0.16, T:0.06
Consensus pattern (20 bp):
AAAAAAAGAAAGAAAAAAAG
Found at i:1612050 original size:35 final size:38
Alignment explanation
Indices: 1612001--1612078 Score: 101
Period size: 34 Copynumber: 2.1 Consensus size: 38
1611991 GAAAAAATAA
* *
1612001 AAGAAAAAAAGAAA-GACAAAA-AGAAATAA-AAG-AG
1 AAGAAAAAAAGAAAGGAAAAAAGAGAAAGAAGAAGAAG
1612035 AAGAAAAAAGAGAAAGGAAAAAAGAGAAAGAAGAAGAAG
1 AAGAAAAAA-AGAAAGGAAAAAAGAGAAAGAAGAAGAAG
1612074 AAGAA
1 AAGAA
1612079 GATGAACAAG
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
34 9 0.24
35 5 0.14
36 6 0.16
37 7 0.19
38 3 0.08
39 7 0.19
ACGTcount: A:0.74, C:0.01, G:0.23, T:0.01
Consensus pattern (38 bp):
AAGAAAAAAAGAAAGGAAAAAAGAGAAAGAAGAAGAAG
Found at i:1613635 original size:36 final size:36
Alignment explanation
Indices: 1613590--1613663 Score: 87
Period size: 36 Copynumber: 2.1 Consensus size: 36
1613580 AAACCTCAAC
1613590 TTGAATTTCTCATGAA-AAGAAGTCAATCTTTCAGTT
1 TTGAATTTCTCATGAAGAAGAA-TCAATCTTTCAGTT
* ** * *
1613626 TTGACTTTCTTGTGAAGAGGAATCAATCTTTTAGTT
1 TTGAATTTCTCATGAAGAAGAATCAATCTTTCAGTT
1613662 TT
1 TT
1613664 TTCCTTCTTA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
36 28 0.88
37 4 0.12
ACGTcount: A:0.28, C:0.12, G:0.16, T:0.43
Consensus pattern (36 bp):
TTGAATTTCTCATGAAGAAGAATCAATCTTTCAGTT
Found at i:1613761 original size:45 final size:45
Alignment explanation
Indices: 1613626--1614362 Score: 622
Period size: 45 Copynumber: 16.7 Consensus size: 45
1613616 TCTTTCAGTT
* * * * *
1613626 TTGACTTTCTTGTGAAGAGGAATCAATCTTTTAGTTTTTTCCTTC
1 TTGACTTTCTCGTGAAGAGGAGTCAATCTTTTAGTGTTGTCATTC
* * * * * * *
1613671 TTAACTTTCTTGTGAAGAGAAGTTAA-CTTTTTAGTGATATTATTC
1 TTGACTTTCTCGTGAAGAGGAGTCAATC-TTTTAGTGTTGTCATTC
* * * *
1613716 TTGA-TTATCTCATGAAGAAGATTCAATCTTTCAGTGTTGTCATTC
1 TTGACTT-TCTCGTGAAGAGGAGTCAATCTTTTAGTGTTGTCATTC
* *
1613761 TTGACGTTCTCGTGAAGAGGAGTTAATCTTTTA-----G----TC
1 TTGACTTTCTCGTGAAGAGGAGTCAATCTTTTAGTGTTGTCATTC
* * * *
1613797 TTGACTTTCTCTTGAAGAGGAGTCAATCTTTTAATGCTGTCCTTC
1 TTGACTTTCTCGTGAAGAGGAGTCAATCTTTTAGTGTTGTCATTC
* *
1613842 TTGACTTTCTCGTGAAGAGGAGTCAA-CTTTTTAGTGATGTTATTC
1 TTGACTTTCTCGTGAAGAGGAGTCAATC-TTTTAGTGTTGTCATTC
*
1613887 TTGACTTTCTCGTGAAGAGGAGTCAATCTTTTAGTGTTGTCATTA
1 TTGACTTTCTCGTGAAGAGGAGTCAATCTTTTAGTGTTGTCATTC
* * * *
1613932 TTGACTTTCTCGTGAATATGAGTCAATC-TTTAGTGTTTTCATTA
1 TTGACTTTCTCGTGAAGAGGAGTCAATCTTTTAGTGTTGTCATTC
*
1613976 TTGACTTTCTTGTGAAGAGGAGTCAATCTTTTAGTGTTGTCATTC
1 TTGACTTTCTCGTGAAGAGGAGTCAATCTTTTAGTGTTGTCATTC
*
1614021 TTGA-TGTTCTCGTGAAGATGAGTCAATCTTTTA-----GTC--T-
1 TTGACT-TTCTCGTGAAGAGGAGTCAATCTTTTAGTGTTGTCATTC
* * * *
1614058 TT-ACTTTATCATGAAGAGGAGTCAATCTTTTAGTTTTGTCCTTC
1 TTGACTTTCTCGTGAAGAGGAGTCAATCTTTTAGTGTTGTCATTC
* * *** ** * *
1614102 TTAACTTTTTCACAAAGAGGAGTTGATCTTTTAGTGTTATCTTTC
1 TTGACTTTCTCGTGAAGAGGAGTCAATCTTTTAGTGTTGTCATTC
* * ** * *
1614147 TTGACTTTCTCATTAAGAGGAGTCAGCCTTTTAGTGATGTTATTC
1 TTGACTTTCTCGTGAAGAGGAGTCAATCTTTTAGTGTTGTCATTC
* * * *
1614192 TTGACTTTCTTGTGAAGAGGAGTCGATATTTTAGTGTTGTCCTTC
1 TTGACTTTCTCGTGAAGAGGAGTCAATCTTTTAGTGTTGTCATTC
*** * *
1614237 TTGACTTTCTCACAAAGAGGAGTCAACCTTTTAGTGATGTCATTC
1 TTGACTTTCTCGTGAAGAGGAGTCAATCTTTTAGTGTTGTCATTC
* * * * * *
1614282 TTGACTTTATCGGGAAAAGGAGTCAACCTTTTAGTGATGTCTTTCTCAAC
1 TTGACTTTCTCGTGAAGAGGAGTCAATCTTTTAGTGTTGTC-AT-T---C
* *
1614332 TTAACTTTCTCGTGGAGAGGAGTCAA-CTTTT
1 TTGACTTTCTCGTGAAGAGGAGTCAATCTTTT
1614363 CAGTAGTATC
Statistics
Matches: 560, Mismatches: 100, Indels: 60
0.78 0.14 0.08
Matches are distributed among these distances:
36 57 0.10
37 3 0.01
38 1 0.00
40 4 0.01
41 4 0.01
43 1 0.00
44 47 0.08
45 411 0.73
46 4 0.01
47 1 0.00
49 5 0.01
50 22 0.04
ACGTcount: A:0.23, C:0.15, G:0.19, T:0.43
Consensus pattern (45 bp):
TTGACTTTCTCGTGAAGAGGAGTCAATCTTTTAGTGTTGTCATTC
Found at i:1613807 original size:36 final size:36
Alignment explanation
Indices: 1613759--1613829 Score: 115
Period size: 36 Copynumber: 2.0 Consensus size: 36
1613749 GTGTTGTCAT
*
1613759 TCTTGACGTTCTCGTGAAGAGGAGTTAATCTTTTAG
1 TCTTGACGTTCTCGTGAAGAGGAGTCAATCTTTTAG
* *
1613795 TCTTGACTTTCTCTTGAAGAGGAGTCAATCTTTTA
1 TCTTGACGTTCTCGTGAAGAGGAGTCAATCTTTTA
1613830 ATGCTGTCCT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.23, C:0.15, G:0.21, T:0.41
Consensus pattern (36 bp):
TCTTGACGTTCTCGTGAAGAGGAGTCAATCTTTTAG
Found at i:1613915 original size:171 final size:170
Alignment explanation
Indices: 1613589--1614316 Score: 618
Period size: 171 Copynumber: 4.2 Consensus size: 170
1613579 GAAACCTCAA
* * * * * *
1613589 CTTGAATTTCTCATGAAAAGAAGTCAATCTTTCAGTTTTGACTTTCTTGTGAAGAGGAATCAATC
1 CTTGACTTTCTCGTGAAAAGGAGTCAATCTTTTAGTCTTGACTTTCTTGTGAAGAGGAGTCAATC
* * * * * * * *
1613654 TTTTAGTTTTTTCCTTCTTAACTTTCTTGTGAAGAGAAGTTAACTTTTTAGTGATATTATTCTTG
66 TTTTAGTGTTGTCATTCTTGACTTTCTCGTGAAGAGGAGTCAA-TTTTTAGTGATGTTATTCTTG
* * *
1613719 A-TTATCTCATGAAGAAGATTCAATCTTTCAGTGTTGTCATT
130 ACTT-TCTCATGAAGAGGAGTCAATCTTTTAGTGTTGTCATT
* * *
1613760 CTTGACGTTCTCGTGAAGAGGAGTTAATCTTTTAGTCTTGACTTTCTCT-TGAAGAGGAGTCAAT
1 CTTGACTTTCTCGTGAAAAGGAGTCAATCTTTTAGTCTTGACTTTCT-TGTGAAGAGGAGTCAAT
* * *
1613824 CTTTTAATGCTGTCCTTCTTGACTTTCTCGTGAAGAGGAGTCAACTTTTTAGTGATGTTATTCTT
65 CTTTTAGTGTTGTCATTCTTGACTTTCTCGTGAAGAGGAGTCAA-TTTTTAGTGATGTTATTCTT
*
1613889 GACTTTCTCGTGAAGAGGAGTCAATCTTTTAGTGTTGTCATT
129 GACTTTCTCATGAAGAGGAGTCAATCTTTTAGTGTTGTCATT
* * *
1613931 ATTGACTTTCTCGTGAATATGAGTCAATC-TTTAGTGTTTTCATTATTGACTTTCTTGTGAAGAG
1 CTTGACTTTCTCGTGAAAAGGAGTCAATCTTTTA--G---TC----TTGACTTTCTTGTGAAGAG
* *
1613995 GAGTCAATCTTTTAGTGTTGTCATTCTTGA-TGTTCTCGTGAAGATGAGTCAATCTTT--T-A-G
57 GAGTCAATCTTTTAGTGTTGTCATTCTTGACT-TTCTCGTGAAGAGGAGTCAATTTTTAGTGATG
* * * *
1614055 ----TCTTTACTTTATCATGAAGAGGAGTCAATCTTTTAGTTTTGTCCTT
121 TTATTCTTGACTTTCTCATGAAGAGGAGTCAATCTTTTAGTGTTGTCATT
* * ** ** ** *
1614101 CTTAACTTTTTC-ACAAAGAGGAGTTGATCTTTTAGTGTTATCTTTCTTGACTTTCTCATTAAGA
1 CTTGACTTTCTCGTGAAA-AGGAGTCAATCTTTTA--G-------TCTTGACTTTCTTGTGAAGA
** * * * * *
1614165 GGAGTCAGCCTTTTAGTGATGTTATTCTTGACTTTCTTGTGAAGAGGAGTCGATATTTTAGTGTT
56 GGAGTCAATCTTTTAGTGTTGTCATTCTTGACTTTCTCGTGAAGAGGAGTCAAT-TTTTAGTGAT
** ** * *
1614230 GTCCTTCTTGACTTTCTCACAAAGAGGAGTCAACCTTTTAGTGATGTCATT
120 GTTATTCTTGACTTTCTCATGAAGAGGAGTCAATCTTTTAGTGTTGTCATT
* * *
1614281 CTTGACTTTATCGGGAAAAGGAGTCAACCTTTTAGT
1 CTTGACTTTCTCGTGAAAAGGAGTCAATCTTTTAGT
1614317 GATGTCTTTC
Statistics
Matches: 453, Mismatches: 74, Indels: 60
0.77 0.13 0.10
Matches are distributed among these distances:
169 2 0.00
170 62 0.14
171 236 0.52
172 8 0.02
174 2 0.00
175 7 0.02
176 2 0.00
178 7 0.02
179 63 0.14
180 61 0.13
181 3 0.01
ACGTcount: A:0.23, C:0.15, G:0.19, T:0.43
Consensus pattern (170 bp):
CTTGACTTTCTCGTGAAAAGGAGTCAATCTTTTAGTCTTGACTTTCTTGTGAAGAGGAGTCAATC
TTTTAGTGTTGTCATTCTTGACTTTCTCGTGAAGAGGAGTCAATTTTTAGTGATGTTATTCTTGA
CTTTCTCATGAAGAGGAGTCAATCTTTTAGTGTTGTCATT
Found at i:1615474 original size:17 final size:17
Alignment explanation
Indices: 1615434--1615477 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
1615424 GGTCAAATTT
*
1615434 TAATTAATTATAGTTATG
1 TAATTAA-TATAGTTATA
* *
1615452 TGATTAATATGGTTATA
1 TAATTAATATAGTTATA
1615469 TAATTAATA
1 TAATTAATA
1615478 AATATCATAT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 16 0.73
18 6 0.27
ACGTcount: A:0.41, C:0.00, G:0.11, T:0.48
Consensus pattern (17 bp):
TAATTAATATAGTTATA
Found at i:1622272 original size:21 final size:21
Alignment explanation
Indices: 1622248--1622287 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
1622238 TCGACACTGA
1622248 TGCAACTAATATCGATATTGT
1 TGCAACTAATATCGATATTGT
* *
1622269 TGCAATTAGTATCGATATT
1 TGCAACTAATATCGATATT
1622288 ATTGTGGGTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.33, C:0.12, G:0.15, T:0.40
Consensus pattern (21 bp):
TGCAACTAATATCGATATTGT
Found at i:1630134 original size:54 final size:54
Alignment explanation
Indices: 1630032--1630149 Score: 134
Period size: 54 Copynumber: 2.2 Consensus size: 54
1630022 AACAGTGCAT
* *
1630032 TTTCGGCACTAAATGTGCAACCCATGGTATTCATAATGTGTTTATGAA-TGACAA
1 TTTCGGCACTAAATGTGCAACCCATGGAATTCATAATGAGTTTATGAATTGAC-A
** * *
1630086 TTTCGGCACTATGTGTGC-ACTCCATGGAATTCATAA-GAAGTTTGTGAATTGTCA
1 TTTCGGCACTAAATGTGCAAC-CCATGGAATTCATAATG-AGTTTATGAATTGACA
1630140 TTTCGGCACT
1 TTTCGGCACT
1630150 TCGGTGCAAT
Statistics
Matches: 55, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
53 3 0.05
54 49 0.89
55 3 0.05
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.35
Consensus pattern (54 bp):
TTTCGGCACTAAATGTGCAACCCATGGAATTCATAATGAGTTTATGAATTGACA
Found at i:1640175 original size:17 final size:18
Alignment explanation
Indices: 1640135--1640176 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
1640125 GGTCAAATTT
*
1640135 TAATTAATTATAGTTATG
1 TAATTAATTATAGTTATA
* *
1640153 TGATTAA-TATGGTTATA
1 TAATTAATTATAGTTATA
1640170 TAATTAA
1 TAATTAA
1640177 ATAACACTAG
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
17 14 0.70
18 6 0.30
ACGTcount: A:0.40, C:0.00, G:0.12, T:0.48
Consensus pattern (18 bp):
TAATTAATTATAGTTATA
Found at i:1641829 original size:2 final size:2
Alignment explanation
Indices: 1641824--1641862 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
1641814 TTTTGGTTCT
1641824 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1641863 TATTTATTTC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:1643582 original size:131 final size:130
Alignment explanation
Indices: 1643341--1643661 Score: 434
Period size: 131 Copynumber: 2.5 Consensus size: 130
1643331 CTACATATTG
* * * *
1643341 GATCTACCATGAAGAGTAGGGGAGCATATCCCTTTTTTCCAGATTTGATCTTCTCTGAAAAGCAG
1 GATCTACCATGAA-AGTAGGGG-GCAGATCCCTTTTTTCCAAATTTGATCTTCTCTGAAGAGCAA
*
1643406 TGAAGCAAATCAACCTCGATTCAATCTACCCTGAAGAGAAGTAAAGTG-ATCAACTTTTCCAGAT
64 TGAAGCAAATCAACCTCGATTCAATCTACCCTGAAGAGAAGTAAAGTGAATCAACGTTTCCAGAT
*
1643470 CT
129 AT
* *
1643472 GATCTACCTTGAATAGTAGAGGGGCAGATCCCTTTTTTCCATATTTGATCTTCTCTGAAGAGCAA
1 GATCTACCATGAA-AGTAG-GGGGCAGATCCCTTTTTTCCAAATTTGATCTTCTCTGAAGAGCAA
* * *
1643537 TGAAGCAAATCAACCTCGATTTAATC-ATCCCTGAAGAGCATTAAAGTGAATCAACGTTTCCAGA
64 TGAAGCAAATCAACCTCGATTCAATCTA-CCCTGAAGAGAAGTAAAGTGAATCAACGTTTCCAGA
1643601 TAT
128 TAT
* * *
1643604 GATCTACCCTG-AAGCAGCGGAGCAGATCCC-TTTTTCCAAATTTGATCTTCTCTGAAGA
1 GATCTACCATGAAAGTAG-GGGGCAGATCCCTTTTTTCCAAATTTGATCTTCTCTGAAGA
1643662 TAAGCGGAGC
Statistics
Matches: 171, Mismatches: 16, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
129 27 0.16
130 16 0.09
131 99 0.58
132 29 0.17
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (130 bp):
GATCTACCATGAAAGTAGGGGGCAGATCCCTTTTTTCCAAATTTGATCTTCTCTGAAGAGCAATG
AAGCAAATCAACCTCGATTCAATCTACCCTGAAGAGAAGTAAAGTGAATCAACGTTTCCAGATAT
Found at i:1643650 original size:43 final size:45
Alignment explanation
Indices: 1643593--1643687 Score: 122
Period size: 43 Copynumber: 2.1 Consensus size: 45
1643583 TGAATCAACG
* *
1643593 TTTCCAGATATGATCTACCCTGAAG-CAGCGGAGCAGAT-CCCTT
1 TTTCCAAATATGATCTACCCTGAAGAAAGCGGAGCAGATCCCCTT
* * *
1643636 TTTCCAAATTTGATCTTCTCTGAAGATAAGCGGAGCAGATCCCCTT
1 TTTCCAAATATGATCTACCCTGAAGA-AAGCGGAGCAGATCCCCTT
1643682 TTTCCA
1 TTTCCA
1643688 GTTTTGGTCT
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
43 21 0.48
45 12 0.27
46 11 0.25
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (45 bp):
TTTCCAAATATGATCTACCCTGAAGAAAGCGGAGCAGATCCCCTT
Found at i:1643699 original size:46 final size:45
Alignment explanation
Indices: 1643619--1643707 Score: 133
Period size: 46 Copynumber: 2.0 Consensus size: 45
1643609 ACCCTGAAGC
*
1643619 AGCGGAGCAGATCCCTTTTTCCAAATTTGATCTTCTCTGAAGATA
1 AGCGGAGCAGATCCCTTTTTCCAAATTTGATCTTCTCTAAAGATA
** *
1643664 AGCGGAGCAGATCCCCTTTTTCCAGTTTTGGTCTTCTCTAAAGA
1 AGCGGAGCAGAT-CCCTTTTTCCAAATTTGATCTTCTCTAAAGA
1643708 GCTGTGAAAC
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
45 12 0.31
46 27 0.69
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.34
Consensus pattern (45 bp):
AGCGGAGCAGATCCCTTTTTCCAAATTTGATCTTCTCTAAAGATA
Found at i:1643918 original size:131 final size:131
Alignment explanation
Indices: 1643680--1643922 Score: 335
Period size: 131 Copynumber: 1.9 Consensus size: 131
1643670 GCAGATCCCC
* *
1643680 TTTTTCCAGTTTTGGTCTTCTCTAAAGAGCTGTGAAACAAATCAACCTAGATTCAGTCTTCCCTG
1 TTTTTCCAGTTTTGGTCTTCTCTAAAGAGCAGTGAAACAAATCAACCTAGATTCAATCTTCCCTG
* *
1643745 AAGAGAAGTGAAGTGAATCAACGTTTCCATATATGATATACCCTGAATAACAGTAGAGAAGATCC
66 AAGAGAAGTGAAGTGAATCAAAGTTTCCAGATATGATATACCCTGAATAACAGTAGAGAAGATCC
1643810 T
131 T
* * * *
1643811 TTTTTCCAGTTTTGGTCTTC-CTTGAAGAGCAGTGAAGCAAATCTACCTTGATTCAATCTTCCCT
1 TTTTTCCAGTTTTGGTCTTCTC-TAAAGAGCAGTGAAACAAATCAACCTAGATTCAATCTTCCCT
* * * ** * *
1643875 GAAGTGTAGTGAAGTGAATCAAATTTTTTAGATCTGATCTACCCTGAA
65 GAAGAGAAGTGAAGTGAATCAAAGTTTCCAGATATGATATACCCTGAA
1643923 GAGCAACAGA
Statistics
Matches: 96, Mismatches: 15, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
130 1 0.01
131 95 0.99
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33
Consensus pattern (131 bp):
TTTTTCCAGTTTTGGTCTTCTCTAAAGAGCAGTGAAACAAATCAACCTAGATTCAATCTTCCCTG
AAGAGAAGTGAAGTGAATCAAAGTTTCCAGATATGATATACCCTGAATAACAGTAGAGAAGATCC
T
Found at i:1643945 original size:131 final size:132
Alignment explanation
Indices: 1643680--1643960 Score: 318
Period size: 131 Copynumber: 2.2 Consensus size: 132
1643670 GCAGATCCCC
* *
1643680 TTTTTCCAGTTTTGGTCTT-CTCTAAAGAGCTGTGAAACAAATCAACCTAGATTCAGTCTTCCCT
1 TTTTTCCAGTTTTGGTCTTCCTCTAAAGAGCAGTGAAACAAATCAACCTAGATTCAATCTTCCCT
* * * **
1643744 GAAGAGAAGTGAAGTGAATCAACGTTTCCATATATGATATACCCTGAATAACAGTAGAGAAGATC
66 GAAGAGAAGTGAAGTGAATCAAAGTTTCCAGATATGATATACCCTGAAGAACAACAGAGAAGATC
*
1643809 CT
131 AT
* * * *
1643811 TTTTTCCAGTTTTGGTCTTCCT-TGAAGAGCAGTGAAGCAAATCTACCTTGATTCAATCTTCCCT
1 TTTTTCCAGTTTTGGTCTTCCTCTAAAGAGCAGTGAAACAAATCAACCTAGATTCAATCTTCCCT
* * * ** * * * *
1643875 GAAGTGTAGTGAAGTGAATCAAATTTTTTAGATCTGATCTACCCTGAAGAGCAACAGA-ATATAT
66 GAAGAGAAGTGAAGTGAATCAAAGTTTCCAGATATGATATACCCTGAAGAACAACAGAGA-AGAT
1643939 CAT
130 CAT
* *
1643942 TTTTT-CAGATTTGATCTTC
1 TTTTTCCAGTTTTGGTCTTC
1643961 AAAAATCTCT
Statistics
Matches: 125, Mismatches: 23, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
130 13 0.10
131 110 0.88
132 2 0.02
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34
Consensus pattern (132 bp):
TTTTTCCAGTTTTGGTCTTCCTCTAAAGAGCAGTGAAACAAATCAACCTAGATTCAATCTTCCCT
GAAGAGAAGTGAAGTGAATCAAAGTTTCCAGATATGATATACCCTGAAGAACAACAGAGAAGATC
AT
Found at i:1644133 original size:3 final size:3
Alignment explanation
Indices: 1644125--1644195 Score: 74
Period size: 3 Copynumber: 24.0 Consensus size: 3
1644115 TTTTGATTGT
* * *
1644125 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA CTA TTTA ATA TCA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA
* *
1644171 TTA ATA TT- TTA TTT TTA TT- TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA
1644196 CTTTGTAGAT
Statistics
Matches: 55, Mismatches: 10, Indels: 6
0.77 0.14 0.08
Matches are distributed among these distances:
2 4 0.07
3 49 0.89
4 2 0.04
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:1649747 original size:209 final size:209
Alignment explanation
Indices: 1649387--1649804 Score: 836
Period size: 209 Copynumber: 2.0 Consensus size: 209
1649377 TGTAGCATCC
1649387 GAAAAACCGGGCTAGTGACTAAAATTGAAGTTTTTGAAATTTGGTGATCAAATTAGAAAAAATTG
1 GAAAAACCGGGCTAGTGACTAAAATTGAAGTTTTTGAAATTTGGTGATCAAATTAGAAAAAATTG
1649452 AAAAGTGCAGGGACTTAATTGTAATTATTTAGCTTGGATTAATTGGGAAAGAAGGAAAGATGGAA
66 AAAAGTGCAGGGACTTAATTGTAATTATTTAGCTTGGATTAATTGGGAAAGAAGGAAAGATGGAA
1649517 GGGTAAAAGGATCATTTGAAAAGTAAAGGAATTAAAAATTCCTTATGGTGATATTAAATACCACG
131 GGGTAAAAGGATCATTTGAAAAGTAAAGGAATTAAAAATTCCTTATGGTGATATTAAATACCACG
1649582 TGGAGTAAGGAAAA
196 TGGAGTAAGGAAAA
1649596 GAAAAACCGGGCTAGTGACTAAAATTGAAGTTTTTGAAATTTGGTGATCAAATTAGAAAAAATTG
1 GAAAAACCGGGCTAGTGACTAAAATTGAAGTTTTTGAAATTTGGTGATCAAATTAGAAAAAATTG
1649661 AAAAGTGCAGGGACTTAATTGTAATTATTTAGCTTGGATTAATTGGGAAAGAAGGAAAGATGGAA
66 AAAAGTGCAGGGACTTAATTGTAATTATTTAGCTTGGATTAATTGGGAAAGAAGGAAAGATGGAA
1649726 GGGTAAAAGGATCATTTGAAAAGTAAAGGAATTAAAAATTCCTTATGGTGATATTAAATACCACG
131 GGGTAAAAGGATCATTTGAAAAGTAAAGGAATTAAAAATTCCTTATGGTGATATTAAATACCACG
1649791 TGGAGTAAGGAAAA
196 TGGAGTAAGGAAAA
1649805 AGGGGAAAAT
Statistics
Matches: 209, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
209 209 1.00
ACGTcount: A:0.42, C:0.07, G:0.24, T:0.27
Consensus pattern (209 bp):
GAAAAACCGGGCTAGTGACTAAAATTGAAGTTTTTGAAATTTGGTGATCAAATTAGAAAAAATTG
AAAAGTGCAGGGACTTAATTGTAATTATTTAGCTTGGATTAATTGGGAAAGAAGGAAAGATGGAA
GGGTAAAAGGATCATTTGAAAAGTAAAGGAATTAAAAATTCCTTATGGTGATATTAAATACCACG
TGGAGTAAGGAAAA
Found at i:1656528 original size:22 final size:21
Alignment explanation
Indices: 1656500--1656557 Score: 82
Period size: 21 Copynumber: 2.7 Consensus size: 21
1656490 TACCTATGTT
*
1656500 CTTCGGGACATATGGAT-AGGTC
1 CTTCGGGACATA--GATGACGTC
1656522 CTTCGGGACATAGATGACGTC
1 CTTCGGGACATAGATGACGTC
1656543 CTTCGGGACATAGAT
1 CTTCGGGACATAGAT
1656558 TTCACATGCC
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
20 3 0.09
21 19 0.56
22 12 0.35
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (21 bp):
CTTCGGGACATAGATGACGTC
Found at i:1659641 original size:2 final size:2
Alignment explanation
Indices: 1659634--1659661 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
1659624 CTATATGTAC
1659634 CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1659662 ATATATATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:1661634 original size:20 final size:20
Alignment explanation
Indices: 1661609--1661660 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
1661599 GCTCTTTACC
* *
1661609 GGTTTTGTCGTAATGAAATT
1 GGTTTTGTCATAATGAAACT
*
1661629 GGTTTTATCATAATGAAACT
1 GGTTTTGTCATAATGAAACT
1661649 GGTTTTGTCATA
1 GGTTTTGTCATA
1661661 TTTTTACATG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.27, C:0.08, G:0.21, T:0.44
Consensus pattern (20 bp):
GGTTTTGTCATAATGAAACT
Found at i:1661826 original size:112 final size:112
Alignment explanation
Indices: 1661629--1662275 Score: 956
Period size: 112 Copynumber: 5.8 Consensus size: 112
1661619 TAATGAAATT
* *
1661629 GGTTTTATCATAATGAAACTGGTTTTGTCATATTTTTACATGTTATATTGTAAAGTATCTG-TAC
1 GGTTTTGTCATAATGAAACTGGTTTTGTCATATTTTTACCTGTTATATTGTAAAGTATC-GATAC
* * * *
1661693 ATTTTTATAAATTATCGATACTTTCAACATATCATGTAGTTATTTACC
65 ATTTTTATAAAGTATCGATACTTTCAACATATCAAGTAGCTCTTTACC
1661741 GGTTTTGTCATAATGAAACTGGTTTTGTCATATTTTTACCTGTTATATTGTAAAGTATCGATACA
1 GGTTTTGTCATAATGAAACTGGTTTTGTCATATTTTTACCTGTTATATTGTAAAGTATCGATACA
* *
1661806 TTTTTATAAAGTATTGATACTTTCAACATATCAAGTAGCTCTTTATC
66 TTTTTATAAAGTATCGATACTTTCAACATATCAAGTAGCTCTTTACC
* ** *
1661853 GGTTTTGTCATAATGAAACTGGTTTTGTTATATTTTTACCTGTTATATTAAAAAGTATCGATAAA
1 GGTTTTGTCATAATGAAACTGGTTTTGTCATATTTTTACCTGTTATATTGTAAAGTATCGATACA
*
1661918 TTTTTATAAAGTATCGATACTTTCAACATATCAAGTAACTCTTTACC
66 TTTTTATAAAGTATCGATACTTTCAACATATCAAGTAGCTCTTTACC
* * *
1661965 GGTTTTTTCATAATGAAACTGGTTTTGTTATATTTTTACCTGTTATATTGTAAAG-ATCGATATA
1 GGTTTTGTCATAATGAAACTGGTTTTGTCATATTTTTACCTGTTATATTGTAAAGTATCGATACA
* * **
1662029 TTTTTATAAGGTATCAATACTTTCAACATATCCGGTAGCTCTTTACC
66 TTTTTATAAAGTATCGATACTTTCAACATATCAAGTAGCTCTTTACC
* * * *
1662076 GGTTTTGTCATAATGAAACTGATTTTGTCATATTTTTACATATTATATTGTAAAGTATCGAAACA
1 GGTTTTGTCATAATGAAACTGGTTTTGTCATATTTTTACCTGTTATATTGTAAAGTATCGATACA
* ** *
1662141 TTTTTAAAAAGTATCGATACTTTCAACATATCCGGTAGCTTTTTACC
66 TTTTTATAAAGTATCGATACTTTCAACATATCAAGTAGCTCTTTACC
* * * * * **
1662188 GATTTTGTCATAATGAAACTGATTTTTTCATATTTTTACCTGTTATATTGTTATGTATTAATACA
1 GGTTTTGTCATAATGAAACTGGTTTTGTCATATTTTTACCTGTTATATTGTAAAGTATCGATACA
1662253 TTTTTATAAAGTATCGATACTTT
66 TTTTTATAAAGTATCGATACTTT
1662276 ATAGGCACTA
Statistics
Matches: 488, Mismatches: 45, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
111 101 0.21
112 387 0.79
ACGTcount: A:0.30, C:0.12, G:0.12, T:0.45
Consensus pattern (112 bp):
GGTTTTGTCATAATGAAACTGGTTTTGTCATATTTTTACCTGTTATATTGTAAAGTATCGATACA
TTTTTATAAAGTATCGATACTTTCAACATATCAAGTAGCTCTTTACC
Found at i:1662135 original size:223 final size:224
Alignment explanation
Indices: 1661629--1662275 Score: 951
Period size: 223 Copynumber: 2.9 Consensus size: 224
1661619 TAATGAAATT
* *
1661629 GGTTTTATCATAATGAAACTGGTTTTGTCATATTTTTACATGTTATATTGTAAAGTATCTG-TAC
1 GGTTTTGTCATAATGAAACTGGTTTTGTCATATTTTTACATGTTATATTGTAAAGTATC-GATAA
* * *
1661693 ATTTTTATAAATTATCGATACTTTCAACATATCATGTAGTTATTTACCGGTTTTGTCATAATGAA
65 ATTTTTATAAAGTATCGATACTTTCAACATATCAAGTAGCTATTTACCGGTTTTGTCATAATGAA
* *
1661758 ACTGGTTTTGTCATATTTTTACCTGTTATATTGTAAAGTATCGATACATTTTTATAAAGTATTGA
130 ACTGGTTTTGTTATATTTTTACCTGTTATATTGTAAAGTATCGATACATTTTTATAAAGTATCGA
*
1661823 TACTTTCAACATATCAAGTAGCTCTTTATC
195 TACTTTCAACATATCAAGTAGCTCTTTACC
* * **
1661853 GGTTTTGTCATAATGAAACTGGTTTTGTTATATTTTTACCTGTTATATTAAAAAGTATCGATAAA
1 GGTTTTGTCATAATGAAACTGGTTTTGTCATATTTTTACATGTTATATTGTAAAGTATCGATAAA
* * *
1661918 TTTTTATAAAGTATCGATACTTTCAACATATCAAGTAACTCTTTACCGGTTTTTTCATAATGAAA
66 TTTTTATAAAGTATCGATACTTTCAACATATCAAGTAGCTATTTACCGGTTTTGTCATAATGAAA
* * *
1661983 CTGGTTTTGTTATATTTTTACCTGTTATATTGTAAAG-ATCGATATATTTTTATAAGGTATCAAT
131 CTGGTTTTGTTATATTTTTACCTGTTATATTGTAAAGTATCGATACATTTTTATAAAGTATCGAT
**
1662047 ACTTTCAACATATCCGGTAGCTCTTTACC
196 ACTTTCAACATATCAAGTAGCTCTTTACC
* *
1662076 GGTTTTGTCATAATGAAACTGATTTTGTCATATTTTTACATATTATATTGTAAAGTATCGA-AAC
1 GGTTTTGTCATAATGAAACTGGTTTTGTCATATTTTTACATGTTATATTGTAAAGTATCGATAA-
* ** * *
1662140 ATTTTTAAAAAGTATCGATACTTTCAACATATCCGGTAGCTTTTTACCGATTTTGTCATAATGAA
65 ATTTTTATAAAGTATCGATACTTTCAACATATCAAGTAGCTATTTACCGGTTTTGTCATAATGAA
* * * **
1662205 ACTGATTTT-TTCATATTTTTACCTGTTATATTGTTATGTATTAATACATTTTTATAAAGTATCG
130 ACTGGTTTTGTT-ATATTTTTACCTGTTATATTGTAAAGTATCGATACATTTTTATAAAGTATCG
1662269 ATACTTT
194 ATACTTT
1662276 ATAGGCACTA
Statistics
Matches: 378, Mismatches: 41, Indels: 8
0.89 0.10 0.02
Matches are distributed among these distances:
222 4 0.01
223 195 0.52
224 179 0.47
ACGTcount: A:0.30, C:0.12, G:0.12, T:0.45
Consensus pattern (224 bp):
GGTTTTGTCATAATGAAACTGGTTTTGTCATATTTTTACATGTTATATTGTAAAGTATCGATAAA
TTTTTATAAAGTATCGATACTTTCAACATATCAAGTAGCTATTTACCGGTTTTGTCATAATGAAA
CTGGTTTTGTTATATTTTTACCTGTTATATTGTAAAGTATCGATACATTTTTATAAAGTATCGAT
ACTTTCAACATATCAAGTAGCTCTTTACC
Found at i:1662196 original size:335 final size:336
Alignment explanation
Indices: 1661629--1662275 Score: 985
Period size: 335 Copynumber: 1.9 Consensus size: 336
1661619 TAATGAAATT
1661629 GGTTTTATCATAATGAAACTGGTTTTGTCATATTTTTACATGTTATATTGTAAAGTATCTGTACA
1 GGTTTTATCATAATGAAACTGGTTTTGTCATATTTTTACATGTTATATTGTAAAGTATCTGTACA
* * * *
1661694 TTTTTATAAATTATCGATACTTTCAACATATCATGTAGTTATTTACCGGTTTTGTCATAATGAAA
66 TTTTTATAAAGTATCAATACTTTCAACATATCAGGTAGCTATTTACCGGTTTTGTCATAATGAAA
* * * * * *
1661759 CTGGTTTTGTCATATTTTTACCTGTTATATTGTAAAGTATCGATACATTTTTATAAAGTATTGAT
131 CTGATTTTGTCATATTTTTACATATTATATTGTAAAGTATCGAAACATTTTTAAAAAGTATCGAT
* * *
1661824 ACTTTCAACATATCAAGTAGCTCTTTATCGGTTTTGTCATAATGAAACTGGTTTTGTT-ATATTT
196 ACTTTCAACATATCAAGTAGCTCTTTACCGATTTTGTCATAATGAAACTGATTTT-TTCATATTT
*
1661888 TTACCTGTTATATTAAAAAGTATCGATAAATTTTTATAAAGTATCGATACTTTCAACATATCAAG
260 TTACCTGTTATATTAAAAAGTATCAATAAATTTTTATAAAGTATCGATACTTTCAACATATCAAG
1661953 TAACTCTTTACC
325 TAACTCTTTACC
* * * *
1661965 GGTTTTTTCATAATGAAACTGGTTTTGTTATATTTTTACCTGTTATATTGTAAAG-ATC-GATAT
1 GGTTTTATCATAATGAAACTGGTTTTGTCATATTTTTACATGTTATATTGTAAAGTATCTG-TAC
* * *
1662028 ATTTTTATAAGGTATCAATACTTTCAACATATCCGGTAGCTCTTTACCGGTTTTGTCATAATGAA
65 ATTTTTATAAAGTATCAATACTTTCAACATATCAGGTAGCTATTTACCGGTTTTGTCATAATGAA
1662093 ACTGATTTTGTCATATTTTTACATATTATATTGTAAAGTATCGAAACATTTTTAAAAAGTATCGA
130 ACTGATTTTGTCATATTTTTACATATTATATTGTAAAGTATCGAAACATTTTTAAAAAGTATCGA
** *
1662158 TACTTTCAACATATCCGGTAGCTTTTTACCGATTTTGTCATAATGAAACTGATTTTTTCATATTT
195 TACTTTCAACATATCAAGTAGCTCTTTACCGATTTTGTCATAATGAAACTGATTTTTTCATATTT
*** * * *
1662223 TTACCTGTTATATTGTTATGTATTAATACATTTTTATAAAGTATCGATACTTT
260 TTACCTGTTATATTAAAAAGTATCAATAAATTTTTATAAAGTATCGATACTTT
1662276 ATAGGCACTA
Statistics
Matches: 279, Mismatches: 30, Indels: 5
0.89 0.10 0.02
Matches are distributed among these distances:
334 3 0.01
335 224 0.80
336 52 0.19
ACGTcount: A:0.30, C:0.12, G:0.12, T:0.45
Consensus pattern (336 bp):
GGTTTTATCATAATGAAACTGGTTTTGTCATATTTTTACATGTTATATTGTAAAGTATCTGTACA
TTTTTATAAAGTATCAATACTTTCAACATATCAGGTAGCTATTTACCGGTTTTGTCATAATGAAA
CTGATTTTGTCATATTTTTACATATTATATTGTAAAGTATCGAAACATTTTTAAAAAGTATCGAT
ACTTTCAACATATCAAGTAGCTCTTTACCGATTTTGTCATAATGAAACTGATTTTTTCATATTTT
TACCTGTTATATTAAAAAGTATCAATAAATTTTTATAAAGTATCGATACTTTCAACATATCAAGT
AACTCTTTACC
Found at i:1662511 original size:72 final size:72
Alignment explanation
Indices: 1662366--1662594 Score: 322
Period size: 71 Copynumber: 3.2 Consensus size: 72
1662356 CGGTAGATAG
* * *
1662366 TTTAATGTAATAAATAACGCCTATTTTTTTTACTGTTTACATTATTAGCAACCTTCAAAAAAAT-
1 TTTAATGTAATAGATAACGCCTA-TTTTTTTACCGTTTACATTATTAACAACCTT-AAAAAAATC
*
1662430 GGTAGGTAT
64 AGTAGGTAT
* *
1662439 TTTAATATAATAGGTAACG-CTATTTTTTTACCGTTTACATTATTAACAACCTTAAAAAAAATCA
1 TTTAATGTAATAGATAACGCCTATTTTTTTACCGTTTACATTATTAACAACCTT-AAAAAAATCA
1662503 GTAGGTAT
65 GTAGGTAT
* *
1662511 TTTGATGTAATAGATAACGCCTA-TTTTTTACCGTTTACATTATTAACAACCTTAAAAAAA-CCG
1 TTTAATGTAATAGATAACGCCTATTTTTTTACCGTTTACATTATTAACAACCTTAAAAAAATCAG
1662574 ATAGGTAT
66 -TAGGTAT
1662582 TTTAATGTAATAG
1 TTTAATGTAATAG
1662595 GTAATTTAAA
Statistics
Matches: 141, Mismatches: 12, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
70 2 0.01
71 63 0.45
72 57 0.40
73 19 0.13
ACGTcount: A:0.37, C:0.13, G:0.11, T:0.39
Consensus pattern (72 bp):
TTTAATGTAATAGATAACGCCTATTTTTTTACCGTTTACATTATTAACAACCTTAAAAAAATCAG
TAGGTAT
Found at i:1662608 original size:71 final size:70
Alignment explanation
Indices: 1662391--1662598 Score: 267
Period size: 72 Copynumber: 2.9 Consensus size: 70
1662381 AACGCCTATT
* * * * * *
1662391 TTTTTTACTGTTTACATTATTAGCAACCTTCAAAAAAATGGTAGGTATTTTAATATAATAGGTAA
1 TTTTTTACCGTTTACATTATTAACAACCTTAAAAAAAACGATAGGTATTTTAATGTAATAGGTAA
*
1662456 CGCTAT
66 C-CTAA
* *
1662462 TTTTTTACCGTTTACATTATTAACAACCTTAAAAAAAATC-AGTAGGTATTTTGATGTAATAGAT
1 TTTTTTACCGTTTACATTATTAACAACCTTAAAAAAAA-CGA-TAGGTATTTTAATGTAATAGGT
1662526 AACGCCT-A
64 AA--CCTAA
*
1662534 TTTTTTACCGTTTACATTATTAACAACCTTAAAAAAACCGATAGGTATTTTAATGTAATAGGTAA
1 TTTTTTACCGTTTACATTATTAACAACCTTAAAAAAAACGATAGGTATTTTAATGTAATAGGTAA
1662599 TTTAAATTTT
Statistics
Matches: 120, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
71 58 0.48
72 59 0.49
73 2 0.02
74 1 0.01
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.39
Consensus pattern (70 bp):
TTTTTTACCGTTTACATTATTAACAACCTTAAAAAAAACGATAGGTATTTTAATGTAATAGGTAA
CCTAA
Found at i:1662861 original size:23 final size:23
Alignment explanation
Indices: 1662813--1662862 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
1662803 ATCTATTTTA
* * *
1662813 TTATATAAGCGCTGCTTATTACG
1 TTATATAAGCGCTACCTAATACG
*
1662836 TTATATAAGCGCTACCTAATATG
1 TTATATAAGCGCTACCTAATACG
1662859 TTAT
1 TTAT
1662863 TGTGCTTGAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.30, C:0.16, G:0.14, T:0.40
Consensus pattern (23 bp):
TTATATAAGCGCTACCTAATACG
Found at i:1662975 original size:158 final size:155
Alignment explanation
Indices: 1662677--1663127 Score: 560
Period size: 158 Copynumber: 2.9 Consensus size: 155
1662667 TACCTATTTT
* * * * *
1662677 GTTACATAAACGCTACCTAATATGTTATTATGCTTAATAATGTTTTTAGTAATTAACCGGTTATG
1 GTTATATAAGCGCTACCTAATATGTTATTGTGCTTGATAATG-TTTCAGTAATTAACC-GTTATG
* *
1662742 TTATCATTGGTAACATTTTAGGCGTTTACCTAATATGCTGTAATAGCAAATTAAGTAATTAATC-
64 TTATC-TTGGTAACATTTTAGGCGTTTACCTAATATGTTGTAATAACAAATTAAGTAATTAA-CA
* *
1662806 TATTTTATTATATAAGCGCT-GCTTATTAC
127 TATTTTATTATATAAGCGATATC-TATTAC
* * *
1662835 GTTATATAAGCGCTACCTAATATGTTATTGTGCTTGATAATGTTTACAATAATTAATCGATTATA
1 GTTATATAAGCGCTACCTAATATGTTATTGTGCTTGATAATGTTT-CAGTAATTAACCG-TTATG
* * *
1662900 TTATCCTTGGTAACATTTTAGGCGTTTACATAATATGTTATAATAACAAATTAAATAATTAACAT
64 TTAT-CTTGGTAACATTTTAGGCGTTTACCTAATATGTTGTAATAACAAATTAAGTAATTAACAT
1662965 ATTTTATTATATAAGCGATATCTATTAC
128 ATTTTATTATATAAGCGATATCTATTAC
* * *
1662993 GTTATATAAGCACTACTTAATATGTTAATGTGCTTGATAATGTTTCTAGTAATTAACCG----GT
1 GTTATATAAGCGCTACCTAATATGTTATTGTGCTTGATAATGTTTC-AGTAATTAACCGTTATGT
* * *
1663054 TA---TGTTAACATTTTAAGCGTTTACCTAATATGTTGTAATAACAAATTAAGTAATTAATATAT
65 TATCTTGGTAACATTTTAGGCGTTTACCTAATATGTTGTAATAACAAATTAAGTAATTAACATAT
*
1663116 TTTTTTATATAA
130 TTTATTATATAA
1663128 TCATTACCTA
Statistics
Matches: 259, Mismatches: 28, Indels: 21
0.84 0.09 0.07
Matches are distributed among these distances:
149 65 0.25
153 3 0.01
157 6 0.02
158 183 0.71
159 2 0.01
ACGTcount: A:0.35, C:0.11, G:0.12, T:0.42
Consensus pattern (155 bp):
GTTATATAAGCGCTACCTAATATGTTATTGTGCTTGATAATGTTTCAGTAATTAACCGTTATGTT
ATCTTGGTAACATTTTAGGCGTTTACCTAATATGTTGTAATAACAAATTAAGTAATTAACATATT
TTATTATATAAGCGATATCTATTAC
Found at i:1683174 original size:4 final size:4
Alignment explanation
Indices: 1683167--1683191 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
1683157 CGTGAGTGAG
1683167 TGTT TGTT TGTT TGTT TGTT TGTT T
1 TGTT TGTT TGTT TGTT TGTT TGTT T
1683192 TATTTTTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.00, C:0.00, G:0.24, T:0.76
Consensus pattern (4 bp):
TGTT
Found at i:1683834 original size:76 final size:76
Alignment explanation
Indices: 1683708--1683860 Score: 306
Period size: 76 Copynumber: 2.0 Consensus size: 76
1683698 AAGCCCCACC
1683708 TCACTGGAGAAGTGCACCAGGCGCAATACTACTAGCACTGCCAGCGTGACTCCACCACCATATTA
1 TCACTGGAGAAGTGCACCAGGCGCAATACTACTAGCACTGCCAGCGTGACTCCACCACCATATTA
1683773 GGAAAATAAGG
66 GGAAAATAAGG
1683784 TCACTGGAGAAGTGCACCAGGCGCAATACTACTAGCACTGCCAGCGTGACTCCACCACCATATTA
1 TCACTGGAGAAGTGCACCAGGCGCAATACTACTAGCACTGCCAGCGTGACTCCACCACCATATTA
1683849 GGAAAATAAGG
66 GGAAAATAAGG
1683860 T
1 T
1683861 ACCTTGCATT
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
76 77 1.00
ACGTcount: A:0.33, C:0.27, G:0.22, T:0.18
Consensus pattern (76 bp):
TCACTGGAGAAGTGCACCAGGCGCAATACTACTAGCACTGCCAGCGTGACTCCACCACCATATTA
GGAAAATAAGG
Found at i:1685684 original size:16 final size:18
Alignment explanation
Indices: 1685657--1685689 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
1685647 GGTGGATTTA
1685657 TGTTTATCTTTG-TTATT
1 TGTTTATCTTTGCTTATT
1685674 TGTTT-TCTTTGCTTAT
1 TGTTTATCTTTGCTTAT
1685690 GTATGCTTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.09, C:0.09, G:0.12, T:0.70
Consensus pattern (18 bp):
TGTTTATCTTTGCTTATT
Found at i:1694207 original size:260 final size:260
Alignment explanation
Indices: 1693566--1694632 Score: 1277
Period size: 259 Copynumber: 4.1 Consensus size: 260
1693556 CTCGCTTGAG
* *** *
1693566 TAAGTCCTTCGGGCCATCTATAAGACCCTCC-AGTGGGATGTTTTTATATGATTTGTG-AAAAAA
1 TAAGTCCTCCGGGCCATCTATAAGA-CCTCCGAGCATGATGTTTTCATATGATTTGTGAAAAAAA
* * * *
1693629 TGAGAAAGCGATTTTCAAAGTTCCTCATTTTATCTTTTCCAAAAATGAAATTTTTGAAAAGTAAG
65 TGAGAAAACGATTTTCAAAGTTTCTCATTTTATCTTTTTCGAAAATGAAATTTTTGAAAAGTAA-
* * *
1693694 AAAA-TGATTTCCAAAGTTTTTTACCTAGTAGACTATTTACAAAGTTAGTACA-TCCT-CAGGGC
129 AAAAGTGATTTCCAAAGTTTATTACCTAGTAGACTATTTCCAAAATTAGTA-AGTCCTCCA-GGC
* *
1693756 CATCAGTAAGTCTTCCAAGCTTGATGATTAAATCCTCTAGG-CAATCTGT-A-ACTCTTCGAGTA
192 CATCAGTAAGTCTTCCAAGCTTGATGATTAAATCCTCTGGGTC-ATCTGTAAGACT-TTCGAGCA
1693818 AGATGA
255 AGATGA
* ** * *
1693824 TTAGTCCTCTTGGCCATCTATAAGACCT-CTAGGCAAT-ATGTTTTCATATGATTTGTGGAAAAA
1 TAAGTCCTCCGGGCCATCTATAAGACCTCCGA-GC-ATGATGTTTTCATATGATTTGTGAAAAAA
* *
1693887 ATGAGAAAGCGATTTTCAAACTTTCTCATTTTATCTTTTTCGAAAATGAAATTTTTGAAAAGTAA
64 ATGAGAAAACGATTTTCAAAGTTTCTCATTTTATCTTTTTCGAAAATGAAATTTTTGAAAAGTAA
* **
1693952 AAAAGTGATTTCCAAAGTTTATTACCTAGTAGACTATTTCCAAAATTAGTAAGTCCTCCAAGTTA
129 AAAAGTGATTTCCAAAGTTTATTACCTAGTAGACTATTTCCAAAATTAGTAAGTCCTCCAGGCCA
* *
1694017 TCAGTAAGTCTTCCAAGCTTGATGTTTAAATCCTAC-GGGTCATCTGTAAGTCTTTCGAGCAAGA
194 TCAGTAAGTCTTCCAAGCTTGATGATTAAATCCT-CTGGGTCATCTGTAAGACTTTCGAGCAAGA
1694081 TGA
258 TGA
** *
1694084 TATTTCCTCCGGGCCATCTATAAGACCTCCGAGCATGATGTTTTCATATGATTTTTGAAAAAAAT
1 TAAGTCCTCCGGGCCATCTATAAGACCTCCGAGCATGATGTTTTCATATGATTTGTGAAAAAAAT
* *
1694149 GAGAAAACGATTTTCAAAGTTTCTCATTTTAAT-TTTTTCGAAAATGAAATTTTTGAAAAATAAG
66 GAGAAAACGATTTTCAAAGTTTCTCATTTT-ATCTTTTTCGAAAATGAAATTTTTGAAAAGTAAA
* *
1694213 AAAGTGATTTCCAAAG-TTACTTGCCTAG-AGACTATTTCAAAAATTAGTAAGT-CTCCTAGGCC
130 AAAGTGATTTCCAAAGTTTA-TTACCTAGTAGACTATTTCCAAAATTAGTAAGTCCTCC-AGGCC
* * * * * *
1694275 GTCAGTAAGTCTTCCGAGCCTAATGATTAAATCCTCTGGTTCATCCT-TAAGAATTTCGAGCAAG
193 ATCAGTAAGTCTTCCAAGCTTGATGATTAAATCCTCTGGGTCAT-CTGTAAGACTTTCGAGCAAG
1694339 ATGA
257 ATGA
* ** ** * *
1694343 TAAGTCCTCCAGGCCATCTATAAGATATATGGGCATGATGTTTTCATATGATTTATGGAAAAAAA
1 TAAGTCCTCCGGGCCATCTATAAGACCTCCGAGCATGATGTTTTCATATGATTTGT-GAAAAAAA
*
1694408 TGAGAAAGA-GATTTTCAAAGTTTCTCATTTTATCTTTTTCGAAAATGAAATTTTTGTAAAGTAA
65 TGAGAAA-ACGATTTTCAAAGTTTCTCATTTTATCTTTTTCGAAAATGAAATTTTTGAAAAGTAA
* * * * * * *
1694472 GAAAGTGATTTCCAAAGTTTCTTATCTAGTAGACTATTTCCAAAACTAGTAAGACCTCGAGGCTA
129 AAAAGTGATTTCCAAAGTTTATTACCTAGTAGACTATTTCCAAAATTAGTAAGTCCTCCAGGCCA
* * * * * * * * *
1694537 TCAGTAAGACTTTCGAGCATGATGATTAAATCCTTCCGGGTCACCTATAAGACTTTCAAACAAGA
194 TCAGTAAGTCTTCCAAGCTTGATGATTAAATCC-TCTGGGTCATCTGTAAGACTTTCGAGCAAGA
*
1694602 TGT
258 TGA
**
1694605 TAAGTCCTTTGGGCCATCTATAAGACCT
1 TAAGTCCTCCGGGCCATCTATAAGACCT
1694633 TTGGGTATGA
Statistics
Matches: 700, Mismatches: 83, Indels: 48
0.84 0.10 0.06
Matches are distributed among these distances:
256 1 0.00
257 4 0.01
258 51 0.07
259 290 0.41
260 239 0.34
261 65 0.09
262 50 0.07
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
Consensus pattern (260 bp):
TAAGTCCTCCGGGCCATCTATAAGACCTCCGAGCATGATGTTTTCATATGATTTGTGAAAAAAAT
GAGAAAACGATTTTCAAAGTTTCTCATTTTATCTTTTTCGAAAATGAAATTTTTGAAAAGTAAAA
AAGTGATTTCCAAAGTTTATTACCTAGTAGACTATTTCCAAAATTAGTAAGTCCTCCAGGCCATC
AGTAAGTCTTCCAAGCTTGATGATTAAATCCTCTGGGTCATCTGTAAGACTTTCGAGCAAGATGA
Found at i:1694569 original size:520 final size:518
Alignment explanation
Indices: 1693566--1694632 Score: 1411
Period size: 520 Copynumber: 2.1 Consensus size: 518
1693556 CTCGCTTGAG
** *
1693566 TAAGTCCTTCGGGCCATCTATAAGACCCTCCAGTGGGATGTTTTTATATGATTTGTGAAAAAATG
1 TAAGTCCTTCGGGCCATCTATAAGA-CCTCCAGCAGGATGTTTTCATATGATTTGTGAAAAAATG
* *
1693631 AGAAAGCGATTTTCAAAGTTCCTCATTTTATCTTTTCCAAAAATGAAATTTTTGAAAAGTAAGAA
65 AGAAAACGATTTTCAAAGTTCCTCATTTTATCTTTTCCAAAAATGAAATTTTTGAAAAATAAGAA
** *
1693696 AATGATTTCCAAAGTTTTTTACCTAGTAGACTATTTACAAAGTTAGTACATCCTCAGGGCCATCA
130 AATGATTTCCAAAGTTACTTACCTAGTAGACTATTTACAAAATTAGTACATCCTCAGGGCCATCA
* * * * *
1693761 GTAAGTCTTCCAAGCTTGATGATTAAATCCTCTAGGCAATCTGTAACTCTTCGAGTAAGATGATT
195 GTAAGTCTTCCAAGCCTAATGATTAAATCCTCTAGGCAATCTGTAAATCTTCGAGCAAGATGATA
** * * *
1693826 AGTCCTCTTGGCCATCTATAAGACCTCTAGGCAATATGTTTTCATATGATTTGTGGAAAAAATGA
260 AGTCCTCCAGGCCATCTATAAGACATATAGGCAATATGTTTTCATATGATTTATGGAAAAAATGA
*
1693891 GAAAGCGATTTTCAAACTTTCTCATTTTATCTTTTTCGAAAATGAAATTTTTGAAAAGTAAAAAA
325 GAAAGAGATTTTCAAACTTTCTCATTTTATCTTTTTCGAAAATGAAATTTTTGAAAAGTAAAAAA
* * *
1693956 GTGATTTCCAAAGTTTATTACCTAGTAGACTATTTCCAAAATTAGTAAGTCCTCCAAGTTATCAG
390 GTGATTTCCAAAGTTTATTACCTAGTAGACTATTTCCAAAACTAGTAAGACCTCCAAGCTATCAG
* * * * * * * *
1694021 TAAGTCTTCCAAGCTTGATGTTTAAATCC-TACGGGTCATCTGTAAGTCTTTCGAGCAAGATGA
455 TAAGACTTCCAAGCATGATGATTAAATCCTTACGGGTCACCTATAAGACTTTCAAACAAGATGA
** * * *
1694084 TATTTCCTCCGGGCCATCTATAAGACCTCCGAGCATGATGTTTTCATATGATTTTTGAAAAAAAT
1 TAAGTCCTTCGGGCCATCTATAAGACCTCC-AGCAGGATGTTTTCATATGATTTGTG-AAAAAAT
* * *
1694149 GAGAAAACGATTTTCAAAGTTTCTCATTTTAAT-TTTTTCGAAAATGAAATTTTTGAAAAATAAG
64 GAGAAAACGATTTTCAAAGTTCCTCATTTT-ATCTTTTCCAAAAATGAAATTTTTGAAAAATAAG
* *
1694213 AAAGTGATTTCCAAAGTTACTTGCCTAG-AGACTATTT-CAAAAATTAGTA-AGT-CTCCTA-GG
128 AAAATGATTTCCAAAGTTACTTACCTAGTAGACTATTTAC-AAAATTAGTACA-TCCT-C-AGGG
* *
1694273 CCGTCAGTAAGTCTTCCGAGCCTAATGATTAAATCCTCT-GGTTC-ATCCT-TAAGAAT-TTCGA
189 CCATCAGTAAGTCTTCCAAGCCTAATGATTAAATCCTCTAGG--CAAT-CTGT-A-AATCTTCGA
* *
1694334 GCAAGATGATAAGTCCTCCAGGCCATCTATAAGATATATGGGC-ATGATGTTTTCATATGATTTA
249 GCAAGATGATAAGTCCTCCAGGCCATCTATAAGACATATAGGCAAT-ATGTTTTCATATGATTTA
*
1694398 TGGAAAAAAATGAGAAAGAGATTTTCAAAGTTTCTCATTTTATCTTTTTCGAAAATGAAATTTTT
313 TGG-AAAAAATGAGAAAGAGATTTTCAAACTTTCTCATTTTATCTTTTTCGAAAATGAAATTTTT
* * * *
1694463 GTAAAGTAAGAAAGTGATTTCCAAAGTTTCTTATCTAGTAGACTATTTCCAAAACTAGTAAGACC
377 GAAAAGTAAAAAAGTGATTTCCAAAGTTTATTACCTAGTAGACTATTTCCAAAACTAGTAAGACC
* * * * *
1694528 TCGAGGCTATCAGTAAGACTTTCGAGCATGATGATTAAATCCTTCCGGGTCACCTATAAGACTTT
442 TCCAAGCTATCAGTAAGACTTCCAAGCATGATGATTAAATCCTTACGGGTCACCTATAAGACTTT
*
1694593 CAAACAAGATGT
507 CAAACAAGATGA
*
1694605 TAAGTCCTTTGGGCCATCTATAAGACCT
1 TAAGTCCTTCGGGCCATCTATAAGACCT
1694633 TTGGGTATGA
Statistics
Matches: 475, Mismatches: 59, Indels: 27
0.85 0.11 0.05
Matches are distributed among these distances:
517 11 0.02
518 105 0.22
519 152 0.32
520 156 0.33
521 51 0.11
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
Consensus pattern (518 bp):
TAAGTCCTTCGGGCCATCTATAAGACCTCCAGCAGGATGTTTTCATATGATTTGTGAAAAAATGA
GAAAACGATTTTCAAAGTTCCTCATTTTATCTTTTCCAAAAATGAAATTTTTGAAAAATAAGAAA
ATGATTTCCAAAGTTACTTACCTAGTAGACTATTTACAAAATTAGTACATCCTCAGGGCCATCAG
TAAGTCTTCCAAGCCTAATGATTAAATCCTCTAGGCAATCTGTAAATCTTCGAGCAAGATGATAA
GTCCTCCAGGCCATCTATAAGACATATAGGCAATATGTTTTCATATGATTTATGGAAAAAATGAG
AAAGAGATTTTCAAACTTTCTCATTTTATCTTTTTCGAAAATGAAATTTTTGAAAAGTAAAAAAG
TGATTTCCAAAGTTTATTACCTAGTAGACTATTTCCAAAACTAGTAAGACCTCCAAGCTATCAGT
AAGACTTCCAAGCATGATGATTAAATCCTTACGGGTCACCTATAAGACTTTCAAACAAGATGA
Found at i:1695603 original size:12 final size:12
Alignment explanation
Indices: 1695585--1695620 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
1695575 TATATATGTT
1695585 CATGTGATATGA
1 CATGTGATATGA
*
1695597 TATGTGATATGA
1 CATGTGATATGA
*
1695609 CCTGTGATATGA
1 CATGTGATATGA
1695621 GAACATGATA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.31, C:0.08, G:0.25, T:0.36
Consensus pattern (12 bp):
CATGTGATATGA
Found at i:1695642 original size:23 final size:23
Alignment explanation
Indices: 1695612--1695676 Score: 121
Period size: 23 Copynumber: 2.8 Consensus size: 23
1695602 GATATGACCT
1695612 GTGATATGAGAACATGATATGAA
1 GTGATATGAGAACATGATATGAA
1695635 GTGATATGAGAACATGATATGAA
1 GTGATATGAGAACATGATATGAA
1695658 GTGATATGAGATACATGAT
1 GTGATATGAGA-ACATGAT
1695677 CACAAGAGAA
Statistics
Matches: 41, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
23 34 0.83
24 7 0.17
ACGTcount: A:0.42, C:0.05, G:0.26, T:0.28
Consensus pattern (23 bp):
GTGATATGAGAACATGATATGAA
Found at i:1702506 original size:12 final size:12
Alignment explanation
Indices: 1702488--1702523 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
1702478 TATATATGTT
1702488 CATGTGATATGA
1 CATGTGATATGA
*
1702500 TATGTGATATGA
1 CATGTGATATGA
*
1702512 CCTGTGATATGA
1 CATGTGATATGA
1702524 GAACATGATA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.31, C:0.08, G:0.25, T:0.36
Consensus pattern (12 bp):
CATGTGATATGA
Found at i:1702545 original size:23 final size:23
Alignment explanation
Indices: 1702515--1702579 Score: 121
Period size: 23 Copynumber: 2.8 Consensus size: 23
1702505 GATATGACCT
1702515 GTGATATGAGAACATGATATGAA
1 GTGATATGAGAACATGATATGAA
1702538 GTGATATGAGAACATGATATGAA
1 GTGATATGAGAACATGATATGAA
1702561 GTGATATGAGATACATGAT
1 GTGATATGAGA-ACATGAT
1702580 CACAAGAGAA
Statistics
Matches: 41, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
23 34 0.83
24 7 0.17
ACGTcount: A:0.42, C:0.05, G:0.26, T:0.28
Consensus pattern (23 bp):
GTGATATGAGAACATGATATGAA
Found at i:1703478 original size:39 final size:38
Alignment explanation
Indices: 1703361--1703479 Score: 100
Period size: 39 Copynumber: 3.1 Consensus size: 38
1703351 GGTGTTACAG
** **
1703361 TTACATTCACCATAACATTTTCGATGGCAAGCGAAAATA
1 TTACATTCGTCATAACATTTTCGATTACAA-CGAAAATA
* ** *
1703400 TTATAAATTCGT-ATAAC-TTTTTAAGTTA-AACCAAAATA
1 -T-TACATTCGTCATAACATTTTCGA-TTACAACGAAAATA
1703438 TTACATTCGTCATAACATTTTCGATTACAATCGAAAATA
1 TTACATTCGTCATAACATTTTCGATTACAA-CGAAAATA
1703477 TTA
1 TTA
1703480 TAAATTTGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 13
0.71 0.14 0.15
Matches are distributed among these distances:
36 8 0.13
37 9 0.15
38 14 0.23
39 17 0.28
40 7 0.11
41 6 0.10
ACGTcount: A:0.40, C:0.16, G:0.08, T:0.35
Consensus pattern (38 bp):
TTACATTCGTCATAACATTTTCGATTACAACGAAAATA
Found at i:1704229 original size:81 final size:81
Alignment explanation
Indices: 1704073--1704270 Score: 245
Period size: 81 Copynumber: 2.4 Consensus size: 81
1704063 TCTAAAAAAT
* ** * * **
1704073 AATATATTTTTAATTTAAAATATTCAAAAAGATATTGATATTTTTTTAATATCTTTTTAATATTT
1 AATATA-TTTTAATTTGAAATATTCAAAAAGATATTGATATACTTTTAACATCTTTTTAACATCC
* *
1704138 ATATTTAAAAGATAATA
65 AAATTAAAAAGATAATA
*
1704155 AATATATTTTAATTTGAAATATTCAAAAAGATATTGATA-ACTTTTAGCATCTTTTTAACATCCA
1 AATATATTTTAATTTGAAATATTCAAAAAGATATTGATATACTTTTAACATCTTTTTAACATCCA
1704219 AACTTAAAAAGATAATA
66 AA-TTAAAAAGATAATA
* * *
1704236 AATATCTTTTAATTTGAGATATTTAAAAAAGATAT
1 AATATATTTTAATTTGAAATA-TTCAAAAAGATAT
1704271 AATTATCTTA
Statistics
Matches: 101, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
80 19 0.19
81 64 0.63
82 18 0.18
ACGTcount: A:0.45, C:0.06, G:0.06, T:0.44
Consensus pattern (81 bp):
AATATATTTTAATTTGAAATATTCAAAAAGATATTGATATACTTTTAACATCTTTTTAACATCCA
AATTAAAAAGATAATA
Found at i:1704262 original size:36 final size:35
Alignment explanation
Indices: 1704222--1704334 Score: 117
Period size: 36 Copynumber: 3.2 Consensus size: 35
1704212 ACATCCAAAC
1704222 TTAAAAAGATAATAAATATCTTTTAATTTGAGATAT
1 TTAAAAAGATAATAAATATCTTTTAATTT-AGATAT
*
1704258 TTAAAAAAGAT-ATAATTATCTTATTAATATTCA-A-AT
1 TT-AAAAAGATAATAAATATCTT-TTAAT-TT-AGATAT
* *
1704294 TTAAAGAGATAATAAACAT-TTTTAATTTAGAATAT
1 TTAAAAAGATAATAAATATCTTTTAATTTAG-ATAT
1704329 TTAAAA
1 TTAAAA
1704335 GGACATGAAT
Statistics
Matches: 64, Mismatches: 6, Indels: 15
0.75 0.07 0.18
Matches are distributed among these distances:
32 1 0.02
33 2 0.03
34 6 0.09
35 16 0.25
36 22 0.34
37 14 0.22
38 3 0.05
ACGTcount: A:0.50, C:0.04, G:0.06, T:0.41
Consensus pattern (35 bp):
TTAAAAAGATAATAAATATCTTTTAATTTAGATAT
Found at i:1707862 original size:115 final size:114
Alignment explanation
Indices: 1707673--1707907 Score: 271
Period size: 115 Copynumber: 2.1 Consensus size: 114
1707663 GATTATAAAG
*
1707673 AAATAAATTCAACGATTTAATTTTTTTACAAAACAAAATCATATAAAATTCTATGAAAATAAATT
1 AAATAAATTCAACGATTTAATTTTTTTACAAAACAAAATCATATAAAATTCCATGAAAATAAATT
** *
1707738 CAACAATTTATTTCCTTCTACAAAATGGAATCGTTCAAGAATTCC-AAGA
66 CAACAATTTATTTCCTTCTACAAAACAGAATCATTCAAG-ATTCCTAAGA
** * *
1707787 AAATAAATTTGACGATTT-ATTTCCTTTTA-AAAATCAGAATCATATAAGATTCACAT-AAAATA
1 AAATAAATTCAACGATTTAATTT--TTTTACAAAA-CAAAATCATATAAAATTC-CATGAAAATA
* * * * *
1707849 AATTTAACGATTTATTTCTTTTTTCAAAACAGAATCATTCAAGATTCCTAAGA
62 AATTCAACAATTTATTTCCTTCTACAAAACAGAATCATTCAAGATTCCTAAGA
*
1707902 GAATAA
1 AAATAA
1707908 TTTTTTTCTT
Statistics
Matches: 102, Mismatches: 14, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
113 4 0.04
114 25 0.25
115 71 0.70
116 2 0.02
ACGTcount: A:0.45, C:0.13, G:0.07, T:0.35
Consensus pattern (114 bp):
AAATAAATTCAACGATTTAATTTTTTTACAAAACAAAATCATATAAAATTCCATGAAAATAAATT
CAACAATTTATTTCCTTCTACAAAACAGAATCATTCAAGATTCCTAAGA
Found at i:1707910 original size:57 final size:56
Alignment explanation
Indices: 1707611--1707907 Score: 228
Period size: 57 Copynumber: 5.2 Consensus size: 56
1707601 TCGAGATTTT
* * * * * *
1707611 CAAGAAATAAATTCAATGATTTTATTTATTTTTACAAAATAGAATCATACT-TGATTAT
1 CAAGAAATAAATTTAACGA-TTTATTTCTTTTTACAAAACAGAATCATA-TAAGATT-C
* * * * *
1707669 AAAGAAATAAATTCAACGATTTAATT-TTTTTACAAAACAAAATCATATAAAATTC
1 CAAGAAATAAATTTAACGATTTATTTCTTTTTACAAAACAGAATCATATAAGATTC
* * * * * * ** *
1707724 TATGAAAATAAATTCAACAATTTATTTCCTTCTACAAAATGGAATCGT-TCAAGAATTC
1 CAAG-AAATAAATTTAACGATTTATTTCTTTTTACAAAACAGAATCATAT-AAG-ATTC
* *
1707782 CAAGAAAATAAATTTGACGATTTATTTCCTTTTA-AAAATCAGAATCATATAAGATTC
1 CAAG-AAATAAATTTAACGATTTATTTCTTTTTACAAAA-CAGAATCATATAAGATTC
*
1707839 ACATA-AAATAAATTTAACGATTTATTTCTTTTTTCAAAACAGAATCAT-TCAAGATTC
1 -CA-AGAAATAAATTTAACGATTTATTTCTTTTTACAAAACAGAATCATAT-AAGATTC
1707896 CTAAGAGAATAA
1 C-AAGA-AATAA
1707908 TTTTTTTCTT
Statistics
Matches: 194, Mismatches: 31, Indels: 28
0.77 0.12 0.11
Matches are distributed among these distances:
55 3 0.02
56 46 0.24
57 74 0.38
58 69 0.36
59 2 0.01
ACGTcount: A:0.45, C:0.12, G:0.07, T:0.36
Consensus pattern (56 bp):
CAAGAAATAAATTTAACGATTTATTTCTTTTTACAAAACAGAATCATATAAGATTC
Found at i:1708960 original size:35 final size:35
Alignment explanation
Indices: 1708921--1709097 Score: 109
Period size: 35 Copynumber: 5.0 Consensus size: 35
1708911 ATAGATAATA
*
1708921 TAATATATTTTGATTTGAAATATTAAAAAAGATAT
1 TAATATATTTTAATTTGAAATATTAAAAAAGATAT
*
1708956 TAATATATTTTTAATATAT-AAAT-TT-AAAAAGATAA
1 TAATATA-TTTTAAT-T-TGAAATATTAAAAAAGATAT
* * * *
1708991 TAAAATCTTTTAATTTGAGATATGTAAAAAAAATA-
1 TAATATATTTTAATTTGAAATAT-TAAAAAAGATAT
* *
1709026 TAAT-TATCCTATTAATATTCAAAT-TT-AAAGAGATAAT
1 TAATATAT--T-TTAAT-TTGAAATATTAAAAAAGAT-AT
* * *
1709063 AAATATATTTTAATTT-AGAATATTTAAAAGGATAT
1 TAATATATTTTAATTTGA-AATATTAAAAAAGATAT
1709098 GAATTTTAAA
Statistics
Matches: 110, Mismatches: 15, Indels: 34
0.69 0.09 0.21
Matches are distributed among these distances:
32 1 0.01
33 5 0.05
34 15 0.14
35 40 0.36
36 26 0.24
37 14 0.13
38 9 0.08
ACGTcount: A:0.50, C:0.02, G:0.07, T:0.41
Consensus pattern (35 bp):
TAATATATTTTAATTTGAAATATTAAAAAAGATAT
Found at i:1709019 original size:71 final size:70
Alignment explanation
Indices: 1708913--1709091 Score: 204
Period size: 71 Copynumber: 2.5 Consensus size: 70
1708903 ATCTTTTAAT
* * * *
1708913 AGATAATATAATATATTTTGATTTGAAATATTAAAAAAGATATTAATATAT-TTTTAATATAT-A
1 AGATAATA-AATATATTTTAATTTGAGATATTAAAAAAAATA-TAAT-TATCTATTAATAT-TCA
1708976 AATTTAAAA
62 AATTTAAAA
*
1708985 AGATAATAAA-ATCTTTTAATTTGAGATATGTAAAAAAAATATAATTATCCTATTAATATTCAAA
1 AGATAATAAATATATTTTAATTTGAGATAT-TAAAAAAAATATAATTAT-CTATTAATATTCAAA
*
1709049 TTTAAAG
64 TTTAAAA
*
1709056 AGATAATAAATATATTTTAATTT-AGAATATTTAAAA
1 AGATAATAAATATATTTTAATTTGAG-ATATTAAAAA
1709092 GGATATGAAT
Statistics
Matches: 93, Mismatches: 8, Indels: 13
0.82 0.07 0.11
Matches are distributed among these distances:
69 3 0.03
70 21 0.23
71 46 0.49
72 23 0.25
ACGTcount: A:0.51, C:0.02, G:0.06, T:0.41
Consensus pattern (70 bp):
AGATAATAAATATATTTTAATTTGAGATATTAAAAAAAATATAATTATCTATTAATATTCAAATT
TAAAA
Found at i:1710849 original size:10 final size:10
Alignment explanation
Indices: 1710834--1710924 Score: 57
Period size: 10 Copynumber: 9.3 Consensus size: 10
1710824 ATTTTTAATT
1710834 AATAATTAAA
1 AATAATTAAA
1710844 AATAATT-AA
1 AATAATTAAA
1710853 AATAATT--A
1 AATAATTAAA
1710861 AATAATTAACA
1 AATAATTAA-A
* *
1710872 TAGTAATTATA
1 -AATAATTAAA
* * *
1710883 TATATTTATA
1 AATAATTAAA
*
1710893 AATTATT-AA
1 AATAATTAAA
1710902 AA-AATTATAA
1 AATAATTA-AA
*
1710912 AGTAATTAAA
1 AATAATTAAA
1710922 AAT
1 AAT
1710925 TCATCAAAAA
Statistics
Matches: 62, Mismatches: 12, Indels: 14
0.70 0.14 0.16
Matches are distributed among these distances:
8 11 0.18
9 12 0.19
10 25 0.40
11 7 0.11
12 7 0.11
ACGTcount: A:0.59, C:0.01, G:0.02, T:0.37
Consensus pattern (10 bp):
AATAATTAAA
Found at i:1710863 original size:17 final size:19
Alignment explanation
Indices: 1710843--1710925 Score: 68
Period size: 18 Copynumber: 4.4 Consensus size: 19
1710833 TAATAATTAA
1710843 AAATAATTA-AAA-TAATT
1 AAATAATTATAAAGTAATT
1710860 AAATAATTA-ACATAGTAATT
1 AAATAATTATA-A-AGTAATT
* *
1710880 ATATATATTTATAAA-TTATT
1 A-A-ATAATTATAAAGTAATT
*
1710900 AAAAAATTATAAAGTAATT
1 AAATAATTATAAAGTAATT
1710919 AAA-AATT
1 AAATAATT
1710926 CATCAAAAAT
Statistics
Matches: 54, Mismatches: 5, Indels: 13
0.75 0.07 0.18
Matches are distributed among these distances:
17 10 0.19
18 14 0.26
19 9 0.17
20 11 0.20
21 2 0.04
22 7 0.13
23 1 0.02
ACGTcount: A:0.58, C:0.01, G:0.02, T:0.39
Consensus pattern (19 bp):
AAATAATTATAAAGTAATT
Found at i:1710879 original size:39 final size:39
Alignment explanation
Indices: 1710836--1710924 Score: 101
Period size: 39 Copynumber: 2.3 Consensus size: 39
1710826 TTTTAATTAA
*
1710836 TAATTAAAAATAATTA-AAATAATTAAATAATTA-ACATAG
1 TAATTAAAAATAATTATAAATAATTAAAAAATTATA-A-AG
* * * *
1710875 TAATTATATATATTTATAAATTATTAAAAAATTATAAAG
1 TAATTAAAAATAATTATAAATAATTAAAAAATTATAAAG
1710914 TAATTAAAAAT
1 TAATTAAAAAT
1710925 TCATCAAAAA
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
39 24 0.59
40 16 0.39
41 1 0.02
ACGTcount: A:0.58, C:0.01, G:0.02, T:0.38
Consensus pattern (39 bp):
TAATTAAAAATAATTATAAATAATTAAAAAATTATAAAG
Found at i:1710911 original size:18 final size:19
Alignment explanation
Indices: 1710836--1710923 Score: 58
Period size: 19 Copynumber: 4.5 Consensus size: 19
1710826 TTTTAATTAA
1710836 TAATTAAAAATAATTA-AAA-
1 TAATT-AAAA-AATTATAAAG
*
1710855 TAATTAAATAATTA-ACATAG
1 TAATTAAAAAATTATA-A-AG
* *
1710875 TAATTATATATATTTATAAA-
1 TAATTA-A-AAAATTATAAAG
*
1710895 TTATTAAAAAATTATAAAG
1 TAATTAAAAAATTATAAAG
1710914 TAATTAAAAA
1 TAATTAAAAA
1710924 TTCATCAAAA
Statistics
Matches: 56, Mismatches: 6, Indels: 14
0.74 0.08 0.18
Matches are distributed among these distances:
17 6 0.11
18 13 0.23
19 16 0.29
20 11 0.20
21 2 0.04
22 7 0.12
23 1 0.02
ACGTcount: A:0.59, C:0.01, G:0.02, T:0.38
Consensus pattern (19 bp):
TAATTAAAAAATTATAAAG
Found at i:1715803 original size:30 final size:30
Alignment explanation
Indices: 1715768--1715826 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
1715758 CATATTTGAT
*
1715768 TTAAAGGACTAAAATAACAAAAATAGAAAC
1 TTAAAGGACTAAAATAAAAAAAATAGAAAC
1715798 TTAAAGGACTAAAATAAAAAAAATAGAAA
1 TTAAAGGACTAAAATAAAAAAAATAGAAA
1715827 TTCAGAGGGC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.66, C:0.07, G:0.10, T:0.17
Consensus pattern (30 bp):
TTAAAGGACTAAAATAAAAAAAATAGAAAC
Found at i:1716174 original size:14 final size:15
Alignment explanation
Indices: 1716150--1716182 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
1716140 TAATAGGACT
1716150 AAAACATAAGTACTC
1 AAAACATAAGTACTC
*
1716165 AAAA-ATAAGTGCTC
1 AAAACATAAGTACTC
1716179 AAAA
1 AAAA
1716183 TGAAATAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 13 0.76
15 4 0.24
ACGTcount: A:0.58, C:0.15, G:0.09, T:0.18
Consensus pattern (15 bp):
AAAACATAAGTACTC
Found at i:1716391 original size:2 final size:2
Alignment explanation
Indices: 1716384--1716416 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
1716374 AAACCAGAAA
1716384 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1716417 AGAAGTTATC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:1717356 original size:3 final size:3
Alignment explanation
Indices: 1717348--1717405 Score: 82
Period size: 3 Copynumber: 19.3 Consensus size: 3
1717338 TTAAAGTAAC
* *
1717348 TAA TAA TAA TAA TAA TAA TAA TAA TAA CAA TAA CAA -AA TTAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA
1717393 TAA TAA TAA TAA T
1 TAA TAA TAA TAA T
1717406 TATTATTATT
Statistics
Matches: 50, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
2 2 0.04
3 46 0.92
4 2 0.04
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:1717410 original size:3 final size:3
Alignment explanation
Indices: 1717404--1717441 Score: 58
Period size: 3 Copynumber: 12.7 Consensus size: 3
1717394 AATAATAATA
* *
1717404 ATT ATT ATT ATT ATT ATT ATT ATT ATA ATT ATA ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1717442 AATAATTTTG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (3 bp):
ATT
Found at i:1717442 original size:6 final size:6
Alignment explanation
Indices: 1717387--1717444 Score: 53
Period size: 6 Copynumber: 9.7 Consensus size: 6
1717377 ATAACAAAAT
* * * * * * *
1717387 TAATAA TAATAA TAATAA TTATTA TTATTA TTATTA TTATTA TAATTA
1 TAATTA TAATTA TAATTA TAATTA TAATTA TAATTA TAATTA TAATTA
1717435 TAATTA TAAT
1 TAATTA TAAT
1717445 AATTTTGTAG
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 49 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (6 bp):
TAATTA
Found at i:1717808 original size:160 final size:160
Alignment explanation
Indices: 1717618--1717938 Score: 588
Period size: 160 Copynumber: 2.0 Consensus size: 160
1717608 ACGTGATGAA
*
1717618 GAGTTCTGGTCGTCTAAGGGTGATACGACTCCAACGTGATGAGGAGATCTGGTCGGTAGATGACA
1 GAGTTCTGGTCGTCTAAGGGTGACACGACTCCAACGTGATGAGGAGATCTGGTCGGTAGATGACA
* *
1717683 CAGTTCTTATGCGATGAGGACAGTAGGACATCTTTAGGGAGGGTGATAACACGGTTCCTACGCGA
66 CAGTTCTTATGCGATGAGAACAGTAGGACATCTTTAGGGAGGGTGATAACACGGTTCCTACACGA
1717748 TGAGGACAACTGGTTATCTAGGGGTGACAC
131 TGAGGACAACTGGTTATCTAGGGGTGACAC
1717778 GAGTTCTGGTCGTCTAAGGGTGACACGACTCCAACGTGATGAGGAGATCTGGTCGGTAGATGACA
1 GAGTTCTGGTCGTCTAAGGGTGACACGACTCCAACGTGATGAGGAGATCTGGTCGGTAGATGACA
* * *
1717843 CGGTTCTTATGCGATGAGAACAGTATGCCATCTTTAGGGAGGGTGATAACACGGTTCCTACACGA
66 CAGTTCTTATGCGATGAGAACAGTAGGACATCTTTAGGGAGGGTGATAACACGGTTCCTACACGA
1717908 TGAGGACAACTGGTTATCTAGGGGTGACAC
131 TGAGGACAACTGGTTATCTAGGGGTGACAC
1717938 G
1 G
1717939 GCTCCTACGT
Statistics
Matches: 155, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
160 155 1.00
ACGTcount: A:0.26, C:0.18, G:0.32, T:0.24
Consensus pattern (160 bp):
GAGTTCTGGTCGTCTAAGGGTGACACGACTCCAACGTGATGAGGAGATCTGGTCGGTAGATGACA
CAGTTCTTATGCGATGAGAACAGTAGGACATCTTTAGGGAGGGTGATAACACGGTTCCTACACGA
TGAGGACAACTGGTTATCTAGGGGTGACAC
Found at i:1717985 original size:40 final size:39
Alignment explanation
Indices: 1717927--1718083 Score: 118
Period size: 40 Copynumber: 3.8 Consensus size: 39
1717917 CTGGTTATCT
* *
1717927 AGGGGTGACACGGCTCCTACGTGATAAGGAGGTCTGGTC
1 AGGGATGACACGGTTCCTACGTGATAAGGAGGTCTGGTC
* * *
1717966 AGTGGATGACACGGTTCCTACGTGATGAGGACGGTAGACCAT-CTT
1 AG-GGATGACACGGTTCCTACGTGATAAGGA-GGT----C-TGGTC
* *
1718011 AGGGATGATAACACGGTTCTTACGTGATGAGGAGGTCTGGTC
1 AGGGATG---ACACGGTTCCTACGTGATAAGGAGGTCTGGTC
* * *
1718053 GGGGGATAACACGGTTCCTACGCGATAAGGA
1 -AGGGATGACACGGTTCCTACGTGATAAGGA
1718084 CGACAAGCCA
Statistics
Matches: 93, Mismatches: 13, Indels: 23
0.72 0.10 0.18
Matches are distributed among these distances:
39 2 0.02
40 45 0.48
41 4 0.04
42 2 0.02
43 5 0.05
44 5 0.05
45 4 0.04
46 4 0.04
47 22 0.24
ACGTcount: A:0.24, C:0.18, G:0.35, T:0.22
Consensus pattern (39 bp):
AGGGATGACACGGTTCCTACGTGATAAGGAGGTCTGGTC
Found at i:1718095 original size:87 final size:87
Alignment explanation
Indices: 1717934--1718097 Score: 222
Period size: 87 Copynumber: 1.9 Consensus size: 87
1717924 TCTAGGGGTG
* * * *
1717934 ACACGGCTCCTACGTGATAAGGAGGTCTGGTCAGTGGATGACACGGTTCCTACGTGATGAGGACG
1 ACACGGCTCCTACGTGATAAGGAGGTCTGGTCAGGGGATAACACGGTTCCTACGCGATAAGGACG
**
1717999 GTAGACCATCTTAGGGATGATA
66 CAAGACCATCTTAGGGATGATA
* * * *
1718021 ACACGGTTCTTACGTGATGAGGAGGTCTGGTCGGGGGATAACACGGTTCCTACGCGATAAGGACG
1 ACACGGCTCCTACGTGATAAGGAGGTCTGGTCAGGGGATAACACGGTTCCTACGCGATAAGGACG
1718086 ACAAG-CCATCTT
66 -CAAGACCATCTT
1718098 TGGGGAATTG
Statistics
Matches: 66, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
87 64 0.97
88 2 0.03
ACGTcount: A:0.25, C:0.21, G:0.32, T:0.23
Consensus pattern (87 bp):
ACACGGCTCCTACGTGATAAGGAGGTCTGGTCAGGGGATAACACGGTTCCTACGCGATAAGGACG
CAAGACCATCTTAGGGATGATA
Found at i:1718304 original size:36 final size:35
Alignment explanation
Indices: 1718241--1718309 Score: 93
Period size: 36 Copynumber: 1.9 Consensus size: 35
1718231 GAAACAGATT
* **
1718241 CAAAGTTTTTTTAAGGAAAACTGTCTCAAGTGATA
1 CAAAGTTTTTTTAAGAAAAACAATCTCAAGTGATA
*
1718276 CAAAGTTTGTTTTGAGAAAAACAATCTCAAGTGA
1 CAAAGTTT-TTTTAAGAAAAACAATCTCAAGTGA
1718310 GATCAACTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
35 8 0.28
36 21 0.72
ACGTcount: A:0.39, C:0.12, G:0.17, T:0.32
Consensus pattern (35 bp):
CAAAGTTTTTTTAAGAAAAACAATCTCAAGTGATA
Found at i:1718405 original size:37 final size:37
Alignment explanation
Indices: 1718358--1718450 Score: 118
Period size: 37 Copynumber: 2.5 Consensus size: 37
1718348 TATCTCAAAC
1718358 GAAAAATGTCTCAAGCGAGACGAA-ATTTGTTTTAAGA
1 GAAAAATGTCTCAAGCGAGAC-AATATTTGTTTTAAGA
* * *
1718395 GAAAACTGTCTCAAGTGAGACAATATTTTTTTTAAGA
1 GAAAAATGTCTCAAGCGAGACAATATTTGTTTTAAGA
* *
1718432 -AAAATTGTCTCTAGCGAGA
1 GAAAAATGTCTCAAGCGAGA
1718451 TGACACTTTG
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
36 18 0.37
37 31 0.63
ACGTcount: A:0.39, C:0.12, G:0.19, T:0.30
Consensus pattern (37 bp):
GAAAAATGTCTCAAGCGAGACAATATTTGTTTTAAGA
Found at i:1725283 original size:26 final size:25
Alignment explanation
Indices: 1725254--1725324 Score: 101
Period size: 24 Copynumber: 2.8 Consensus size: 25
1725244 TCTTATATTT
1725254 TTTTCTTT-GATGTTCTTTTTTTTTCC
1 TTTTCTTTCG-TGTT-TTTTTTTTTCC
*
1725280 TTTTCTTTCGTG-TTTTTTTTTTCT
1 TTTTCTTTCGTGTTTTTTTTTTTCC
1725304 TTTTCTTTCGTGTTTTTTTTT
1 TTTTCTTTCGTGTTTTTTTTT
1725325 CTTTTGTTCC
Statistics
Matches: 42, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
24 22 0.52
25 9 0.21
26 10 0.24
27 1 0.02
ACGTcount: A:0.01, C:0.13, G:0.08, T:0.77
Consensus pattern (25 bp):
TTTTCTTTCGTGTTTTTTTTTTTCC
Found at i:1725325 original size:23 final size:24
Alignment explanation
Indices: 1725269--1725329 Score: 106
Period size: 24 Copynumber: 2.6 Consensus size: 24
1725259 TTTGATGTTC
*
1725269 TTTTTTTTTCCTTTTCTTTCGTGT
1 TTTTTTTTTCTTTTTCTTTCGTGT
1725293 TTTTTTTTTCTTTTTCTTTCGTG-
1 TTTTTTTTTCTTTTTCTTTCGTGT
1725316 TTTTTTTTTCTTTT
1 TTTTTTTTTCTTTT
1725330 GTTCCCTCGT
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
23 14 0.39
24 22 0.61
ACGTcount: A:0.00, C:0.13, G:0.07, T:0.80
Consensus pattern (24 bp):
TTTTTTTTTCTTTTTCTTTCGTGT
Found at i:1725341 original size:23 final size:23
Alignment explanation
Indices: 1725269--1725343 Score: 71
Period size: 24 Copynumber: 3.2 Consensus size: 23
1725259 TTTGATGTTC
* * *
1725269 TTTTTTTTTCCTTTTCTTTCGTG
1 TTTTTTTTTCTTTTTCTTCCCTG
* *
1725292 TTTTTTTTTTCTTTTTCTTTCGTG
1 -TTTTTTTTTCTTTTTCTTCCCTG
*
1725316 TTTTTTTTTC-TTTTGTTCCCTCG
1 TTTTTTTTTCTTTTTCTTCCCT-G
1725339 TTTTT
1 TTTTT
1725344 GTATTTTTGA
Statistics
Matches: 46, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
22 8 0.17
23 16 0.35
24 22 0.48
ACGTcount: A:0.00, C:0.16, G:0.08, T:0.76
Consensus pattern (23 bp):
TTTTTTTTTCTTTTTCTTCCCTG
Found at i:1725343 original size:24 final size:23
Alignment explanation
Indices: 1725269--1725343 Score: 64
Period size: 23 Copynumber: 3.2 Consensus size: 23
1725259 TTTGATGTTC
* * *
1725269 TTTTTTTTTCCTTTTCTTTCGT-G
1 TTTTTTTTTTCTTTT-TTCCCTCG
**
1725292 TTTTTTTTTTC-TTTTTCTTTCG
1 TTTTTTTTTTCTTTTTTCCCTCG
1725314 TGTTTTTTTTTCTTTTGTTCCCTCG
1 T-TTTTTTTTTCTTTT-TTCCCTCG
1725339 TTTTT
1 TTTTT
1725344 GTATTTTTGA
Statistics
Matches: 42, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
21 3 0.07
22 5 0.12
23 20 0.48
24 7 0.17
25 7 0.17
ACGTcount: A:0.00, C:0.16, G:0.08, T:0.76
Consensus pattern (23 bp):
TTTTTTTTTTCTTTTTTCCCTCG
Found at i:1725873 original size:3 final size:3
Alignment explanation
Indices: 1725865--1725893 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
1725855 TTAAAGTAAT
1725865 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1725894 TTTTTGTACA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:1727097 original size:2 final size:2
Alignment explanation
Indices: 1727084--1727148 Score: 121
Period size: 2 Copynumber: 32.5 Consensus size: 2
1727074 GATCTTATTC
*
1727084 TA TA TC TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1727126 TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA T
1727149 GGTTTTACAC
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
2 61 1.00
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:1731073 original size:3 final size:3
Alignment explanation
Indices: 1731060--1731100 Score: 75
Period size: 3 Copynumber: 14.0 Consensus size: 3
1731050 AAATAAAGTA
1731060 AAT AA- AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1731101 TAAAACCCGG
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.05
3 35 0.95
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:1731548 original size:131 final size:130
Alignment explanation
Indices: 1731350--1732197 Score: 667
Period size: 131 Copynumber: 6.4 Consensus size: 130
1731340 GCGTTTTAGA
* * * * **
1731350 GTAGATCAGATCTGGAAAGTTTGATTCACTTTACTACTCTTCAGGGAAGGTTGAATCAAGGTGGA
1 GTAGATCAGATCTTGAAAGTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCAAGGCAGA
* * * * *
1731415 TTTGCTTCACTTCCCTTTAGAGAATATCAAATATGGAAAAGGGATATGCTTCATTACTTTTTTAG
66 TTTGCTTCACTGCTCTTTAGAGAAGATCAAATATGGAAAAGGGATATGCTTCATTGC-TTTTCAG
1731480 G
130 G
* *
1731481 GTCGATCAGATCTTGAAAGTTTGATTCACTTCACTGTTCTTCAGGGAAGATTGAATCAAGGCAGA
1 GTAGATCAGATCTTGAAAGTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCAAGGCAGA
* * * ** * * * * *
1731546 TTTG-TTCCACTGCT-TCTCAGGGAAGATCAAATCTAAAAAAAGGATTTGCTCCGTTGCGTTTCA
66 TTTGCTT-CACTGCTCT-TTAGAGAAGATCAAATATGGAAAAGGGATATGCTTCATTGCTTTTCA
1731609 GG
129 GG
* * * * **
1731611 GTAAATCAGATCTAGAAAGTTTGATTCACTTCTCTGCTCTTCAGGGAAGATTGAATCGAGGTGGA
1 GTAGATCAGATCTTGAAAGTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCAAGGCAGA
* * * * * * * * *
1731676 TTTGCTTTACTACTCTTCAGAGAAGATCAAATCTAGAAAAAAGGATATGC-TCTTCTACTCTTCA
66 TTTGCTTCACTGCTCTTTAGAGAAGATCAAATAT-GGAAAAGGGATATGCTTCAT-TGCTTTTCA
1731740 GG
129 GG
* * * * *
1731742 GTAGATTAGATC-TGTAAACG-TTGATTCACTTCAATGATCTCCAGGGAAGATTGAATCGAGGCA
1 GTAGATCAGATCTTG-AAA-GTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCAAGGCA
* * * * * *
1731805 CATTTGTTTCACTGCTCTTTAGAGAATATCAAATTTGGGGAAAAAAGGGATCTGC-TCAGCTGCT
64 GATTTGCTTCACTGCTCTTTAGAGAAGATCAAATAT--GG--AAAAGGGATATGCTTCA-TTGCT
1731869 CTTTCAGG
124 -TTTCAGG
* * * * *
1731877 GTAGATCAGATCTAGAAACG-TTGATTCACTTCACTGCTCTTCAAGTAAGATTGAATCGAGGTGG
1 GTAGATCAGATCTTGAAA-GTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATC-AAG-GC
* * * * * *
1731941 ATGGATTTGCTTCACTGCTCTTCATAGAAAATCAAATATGGAAAAAGAGGATCTGCTCCACTGCT
63 A--GATTTGCTTCACTGCTCTTTAGAGAAGATCAAATATGG-AAAAG-GGATATGCTTCATTGCT
*
1732006 CTTCAGG
124 TTTCAGG
* * * * ** *
1732013 TTAGATCAGATCTTGAAAGTTTGATTCACTTCACTGCTCTCCAGGAAAAATT-AATTTGAGGCAA
1 GTAGATCAGATCTTGAAAGTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAA-TCAAGGCAG
* * * * * * *
1732077 ATTTG-TTCCACTACTCCTCT-GGGAAGATCAAATAT-GAAAA-AGAGATGCTCCACTGCTTTTC
65 ATTTGCTT-CACTGCT-CTTTAGAGAAGATCAAATATGGAAAAGGGATATGCTTCATTGCTTTTC
1732138 AGG
128 AGG
* ** * * * *
1732141 GTAGATCAGATCTAGAAACATTGATTCACTTCATTTCTCTTCAGAGAATATTGAATC
1 GTAGATCAGATCTTGAAAGTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATC
1732198 GAGGTTGTCA
Statistics
Matches: 577, Mismatches: 115, Indels: 53
0.77 0.15 0.07
Matches are distributed among these distances:
128 63 0.11
129 2 0.00
130 99 0.17
131 202 0.35
132 25 0.04
133 2 0.00
134 18 0.03
135 58 0.10
136 59 0.10
137 17 0.03
138 2 0.00
139 30 0.05
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.32
Consensus pattern (130 bp):
GTAGATCAGATCTTGAAAGTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCAAGGCAGA
TTTGCTTCACTGCTCTTTAGAGAAGATCAAATATGGAAAAGGGATATGCTTCATTGCTTTTCAGG
Found at i:1731789 original size:261 final size:261
Alignment explanation
Indices: 1731300--1732202 Score: 941
Period size: 261 Copynumber: 3.4 Consensus size: 261
1731290 CCGCTGCTCT
* ** * * * *
1731300 TCAGGGAAAATCAAATTTGAAAAAAAATATCTGCTCTGCTGCGTTTTAGAGTAGATCAGATCTGG
1 TCAGGGAAGATCAAATTTGAAAAAAAGGATCTGCTCCGCTGCGTTTCAGGGTAGATCAGATCTAG
* * * * *
1731365 AAAGTTTGATTCACTT-TACTACTCTTCAGGGAAGGTTGAATCAAGGTGGATTTGCTTCACTTCC
66 AAAGTTTGATTCACTTCT-CTGCTCTTCAGGGAAGATTGAATCGAGGTGGATTTGCTTCACTACT
* * * * * * *
1731429 CTTTAGAGAATATCAAATATGGAAAAGGGATATGCTTCAT-TACTTTTTTAGGGTCGATCAGATC
130 CTTCAGAGAAAATCAAATATGAAAAAAGGATATGC-TCATCTAC-TCTTCAGGGTAGATCAGATC
* * * *
1731493 TTGAAAGTTTGATTCACTTCACTGTTCTTCAGGGAAGATTGAATCAAGGCAGATTTGTTCCACTG
193 TTGAAAGTTTGATTCACTTCACTGATCTCCAGGGAAGATTGAATCGAGGCAAATTTGTTCCACTG
1731558 CTTC
258 CTTC
* * * *
1731562 TCAGGGAAGATCAAATCT-AAAAAAAGGATTTGCTCCGTTGCGTTTCAGGGTAAATCAGATCTAG
1 TCAGGGAAGATCAAATTTGAAAAAAAGGATCTGCTCCGCTGCGTTTCAGGGTAGATCAGATCTAG
*
1731626 AAAGTTTGATTCACTTCTCTGCTCTTCAGGGAAGATTGAATCGAGGTGGATTTGCTTTACTACTC
66 AAAGTTTGATTCACTTCTCTGCTCTTCAGGGAAGATTGAATCGAGGTGGATTTGCTTCACTACTC
* * * *
1731691 TTCAGAGAAGATCAAATCTAGAAAAAAGGATATGCTCTTCTACTCTTCAGGGTAGATTAGATC-T
131 TTCAGAGAAAATCAAATAT-GAAAAAAGGATATGCTCATCTACTCTTCAGGGTAGATCAGATCTT
* * *
1731755 GTAAACG-TTGATTCACTTCAATGATCTCCAGGGAAGATTGAATCGAGGCACATTTGTTTCACTG
195 G-AAA-GTTTGATTCACTTCACTGATCTCCAGGGAAGATTGAATCGAGGCAAATTTGTTCCACTG
1731819 C-TC
258 CTTC
* * * * * *
1731822 TTTAGAGAATATCAAATTTGGGGAAAAAAGGGATCTGCTCAGCTGCTCTTTCAGGGTAGATCAGA
1 -TCAGGGAAGATCAAATTT---GAAAAAAAGGATCTGCTCCGCTGC-GTTTCAGGGTAGATCAGA
* * *
1731887 TCTAGAAACG-TTGATTCACTTCACTGCTCTTCAAGTAAGATTGAATCGAGGTGGATGGATTTGC
61 TCTAGAAA-GTTTGATTCACTTCTCTGCTCTTCAGGGAAGATTGAATCGA---GG-TGGATTTGC
* * * * *
1731951 TTCACTGCTCTTCATAGAAAATCAAATATGGAAAAAGAGGATCTGCTCCA-CTGCTCTTCAGGTT
121 TTCACTACTCTTCAGAGAAAATCAAATAT-GAAAAA-AGGATATGCT-CATCTACTCTTCAGGGT
* * * *
1732015 AGATCAGATCTTGAAAGTTTGATTCACTTCACTGCTCTCCAGGAAAAATT-AATTTGAGGCAAAT
183 AGATCAGATCTTGAAAGTTTGATTCACTTCACTGATCTCCAGGGAAGATTGAA-TCGAGGCAAAT
* *
1732079 TTGTTCCACTACTCC
247 TTGTTCCACTGCTTC
* * * * *
1732094 TCTGGGAAGATCAAATATGAAAAAGA-GA--TGCTCCACTGCTTTTCAGGGTAGATCAGATCTAG
1 TCAGGGAAGATCAAATTTGAAAAAAAGGATCTGCTCCGCTGCGTTTCAGGGTAGATCAGATCTAG
** * * *
1732156 AAACATTGATTCACTTCAT-TTCTCTTCAGAGAATATTGAATCGAGGT
66 AAAGTTTGATTCACTTC-TCTGCTCTTCAGGGAAGATTGAATCGAGGT
1732203 TGTCACAATG
Statistics
Matches: 534, Mismatches: 83, Indels: 50
0.80 0.12 0.07
Matches are distributed among these distances:
260 5 0.01
261 200 0.37
262 34 0.06
264 57 0.11
265 28 0.05
266 60 0.11
267 3 0.01
268 6 0.01
269 2 0.00
270 42 0.08
271 93 0.17
272 4 0.01
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (261 bp):
TCAGGGAAGATCAAATTTGAAAAAAAGGATCTGCTCCGCTGCGTTTCAGGGTAGATCAGATCTAG
AAAGTTTGATTCACTTCTCTGCTCTTCAGGGAAGATTGAATCGAGGTGGATTTGCTTCACTACTC
TTCAGAGAAAATCAAATATGAAAAAAGGATATGCTCATCTACTCTTCAGGGTAGATCAGATCTTG
AAAGTTTGATTCACTTCACTGATCTCCAGGGAAGATTGAATCGAGGCAAATTTGTTCCACTGCTT
C
Found at i:1733129 original size:19 final size:19
Alignment explanation
Indices: 1733094--1733132 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
1733084 TAAAGCACTT
*
1733094 AAAATCTAATGCTTAATTA
1 AAAATCTAATACTTAATTA
1733113 AAAATCTAAATAC-TAATTA
1 AAAATCT-AATACTTAATTA
1733132 A
1 A
1733133 TATTTAGTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.54, C:0.10, G:0.03, T:0.33
Consensus pattern (19 bp):
AAAATCTAATACTTAATTA
Found at i:1734997 original size:87 final size:87
Alignment explanation
Indices: 1734890--1735049 Score: 214
Period size: 87 Copynumber: 1.8 Consensus size: 87
1734880 CTTGAAAGGA
* *
1734890 TGAGCTTTACACTCTCAATGAATTTATAACCCATGATTTGGGTGG-CCTTAATGAGACGAACTTG
1 TGAGCTTTACACTCTCAATGAATTCATAACCCAGGATTTGGGTGGTCCTT-ATGAGACGAACTTG
1734954 ATGAATTCACTGGCTTGATATGT
65 ATGAATTCACTGGCTTGATATGT
* * * * * * * *
1734977 TGAGCTTTGCGCTCTTAATGAGTTCATAGCCCAGGATTTGGGTGGTTCTTGTGAGACGGACTTGA
1 TGAGCTTTACACTCTCAATGAATTCATAACCCAGGATTTGGGTGGTCCTTATGAGACGAACTTGA
1735042 TGAATTCA
66 TGAATTCA
1735050 TTGATTTAAA
Statistics
Matches: 62, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
87 59 0.95
88 3 0.05
ACGTcount: A:0.24, C:0.17, G:0.24, T:0.34
Consensus pattern (87 bp):
TGAGCTTTACACTCTCAATGAATTCATAACCCAGGATTTGGGTGGTCCTTATGAGACGAACTTGA
TGAATTCACTGGCTTGATATGT
Found at i:1735980 original size:4 final size:4
Alignment explanation
Indices: 1735966--1735998 Score: 50
Period size: 4 Copynumber: 8.2 Consensus size: 4
1735956 TTATATCATC
1735966 TTTA TTTTA TTTA TTTA TTTA TTTA -TTA TTTA T
1 TTTA -TTTA TTTA TTTA TTTA TTTA TTTA TTTA T
1735999 GTTAGCCAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
3 3 0.11
4 20 0.74
5 4 0.15
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:1735988 original size:12 final size:12
Alignment explanation
Indices: 1735966--1735998 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
1735956 TTATATCATC
1735966 TTTATTTTATTTA
1 TTTA-TTTATTTA
1735979 TTTATTTATTTA
1 TTTATTTATTTA
1735991 -TTATTTAT
1 TTTATTTAT
1735999 GTTAGCCAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 8 0.40
12 8 0.40
13 4 0.20
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (12 bp):
TTTATTTATTTA
Found at i:1745121 original size:2 final size:2
Alignment explanation
Indices: 1745114--1745139 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
1745104 ATCCTTTCAA
1745114 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
1745140 CCCTTGTTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1745412 original size:32 final size:28
Alignment explanation
Indices: 1745376--1745498 Score: 82
Period size: 24 Copynumber: 4.4 Consensus size: 28
1745366 GACGGTAGAG
1745376 AGAAAGAAGAAAATATATAGTAAAAAAAGGAA
1 AGAAAGAAGAAAATATA-AG-AAAAAAA--AA
* * *
1745408 AGAAAAAAGAAAAAATAAGAAAAAAATA
1 AGAAAGAAGAAAATATAAGAAAAAAAAA
*
1745436 AGAAAG-A-AAAA-ATAAG-AAAGAAAA
1 AGAAAGAAGAAAATATAAGAAAAAAAAA
*
1745460 A-ACAGAA-AAAA-A-AGAGAAAAAAAGAA
1 AGAAAGAAGAAAATATA-AGAAAAAAA-AA
1745486 AGAAGAGAAGAAA
1 AGAA-AGAAGAAA
1745499 GAAGAAAGAA
Statistics
Matches: 75, Mismatches: 9, Indels: 17
0.74 0.09 0.17
Matches are distributed among these distances:
23 4 0.05
24 15 0.20
25 10 0.13
26 7 0.09
27 2 0.03
28 10 0.13
29 3 0.04
30 7 0.09
31 2 0.03
32 15 0.20
ACGTcount: A:0.76, C:0.01, G:0.17, T:0.06
Consensus pattern (28 bp):
AGAAAGAAGAAAATATAAGAAAAAAAAA
Found at i:1745414 original size:14 final size:14
Alignment explanation
Indices: 1745397--1745501 Score: 70
Period size: 16 Copynumber: 7.1 Consensus size: 14
1745387 AATATATAGT
*
1745397 AAAAAAAGGAAAGAA
1 AAAAAAAAGAAAG-A
*
1745412 AAAAGAAAAAATAAGA
1 AAAA-AAAAGA-AAGA
1745428 AAAAAATAAGAAAGA
1 AAAAAA-AAGAAAGA
*
1745443 AAAAATAAGAAAG-
1 AAAAAAAAGAAAGA
*
1745456 AAAAAACAGAAA-A
1 AAAAAAAAGAAAGA
*
1745469 AAAAGAGAAAAAAAGA
1 AAAA-A-AAAGAAAGA
*
1745485 AAGAAGAGAAGAAAGA
1 AA-AA-AAAAGAAAGA
1745501 A
1 A
1745502 GAAAGAAAAC
Statistics
Matches: 72, Mismatches: 10, Indels: 15
0.74 0.10 0.15
Matches are distributed among these distances:
13 14 0.19
14 8 0.11
15 20 0.28
16 23 0.32
17 7 0.10
ACGTcount: A:0.79, C:0.01, G:0.17, T:0.03
Consensus pattern (14 bp):
AAAAAAAAGAAAGA
Found at i:1745418 original size:7 final size:7
Alignment explanation
Indices: 1745406--1745510 Score: 61
Period size: 7 Copynumber: 14.1 Consensus size: 7
1745396 TAAAAAAAGG
1745406 AAAGAAA
1 AAAGAAA
1745413 AAAGAAAAA
1 AAAG--AAA
1745422 ATAAGAAA
1 A-AAGAAA
1745430 AAA-ATAA
1 AAAGA-AA
1745437 GAAAGAAA
1 -AAAGAAA
* *
1745445 AAATAAG
1 AAAGAAA
1745452 AAAGAAA
1 AAAGAAA
* *
1745459 AAACAGA
1 AAAGAAA
1745466 AAA-AAA
1 AAAGAAA
*
1745472 AGAGAAAA
1 AAAG-AAA
1745480 AAAGAAA
1 AAAGAAA
*
1745487 GAAGAGAAG
1 -AA-AGAAA
*
1745496 AAAGAAG
1 AAAGAAA
1745503 AAAGAAA
1 AAAGAAA
1745510 A
1 A
1745511 CCGATCAACA
Statistics
Matches: 77, Mismatches: 11, Indels: 20
0.71 0.10 0.19
Matches are distributed among these distances:
6 5 0.06
7 41 0.53
8 19 0.25
9 9 0.12
10 3 0.04
ACGTcount: A:0.79, C:0.01, G:0.17, T:0.03
Consensus pattern (7 bp):
AAAGAAA
Found at i:1745419 original size:11 final size:11
Alignment explanation
Indices: 1745398--1745509 Score: 88
Period size: 12 Copynumber: 9.9 Consensus size: 11
1745388 ATATATAGTA
1745398 AAAAAAGGAAAG
1 AAAAAA-GAAAG
1745410 AAAAAAGAAA-
1 AAAAAAGAAAG
*
1745420 AAATAAGAAA-
1 AAAAAAGAAAG
1745430 AAAATAAGAAAG
1 AAAA-AAGAAAG
*
1745442 AAAAAA-TAAG
1 AAAAAAGAAAG
*
1745452 AAAGAAAAAACAG
1 AAA-AAAGAA-AG
1745465 AAAAAA-AAGAG
1 AAAAAAGAA-AG
1745476 AAAAAAAGAAAG
1 -AAAAAAGAAAG
*
1745488 AAGAGAAGAAAG
1 AA-AAAAGAAAG
*
1745500 AAGAAAGAAA
1 AAAAAAGAAA
1745510 ACCGATCAAC
Statistics
Matches: 84, Mismatches: 8, Indels: 17
0.77 0.07 0.16
Matches are distributed among these distances:
10 18 0.21
11 27 0.32
12 32 0.38
13 7 0.08
ACGTcount: A:0.79, C:0.01, G:0.18, T:0.03
Consensus pattern (11 bp):
AAAAAAGAAAG
Found at i:1745447 original size:25 final size:24
Alignment explanation
Indices: 1745413--1745489 Score: 104
Period size: 25 Copynumber: 3.2 Consensus size: 24
1745403 AGGAAAGAAA
1745413 AAAGAAAAAATAAGAAAAAAATAAG
1 AAAGAAAAAATAAGAAAAAAA-AAG
*
1745438 AAAGAAAAAATAAGAAAGAAAAA-
1 AAAGAAAAAATAAGAAAAAAAAAG
* *
1745461 ACAGAAAAAA-AAGAGAAAAAAAG
1 AAAGAAAAAATAAGAAAAAAAAAG
1745484 AAAGAA
1 AAAGAA
1745490 GAGAAGAAAG
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
22 10 0.22
23 14 0.30
24 2 0.04
25 20 0.43
ACGTcount: A:0.81, C:0.01, G:0.14, T:0.04
Consensus pattern (24 bp):
AAAGAAAAAATAAGAAAAAAAAAG
Found at i:1745456 original size:39 final size:36
Alignment explanation
Indices: 1745413--1745510 Score: 99
Period size: 38 Copynumber: 2.6 Consensus size: 36
1745403 AGGAAAGAAA
1745413 AAAGAAAAAATAAGAAAAAAATA-AGAAAGAAAAAATAAG
1 AAAGAAAAAA-AAGAAAAAAA-AGAGAAA-AAAAAA-AAG
* *
1745452 AAAGAAAAAACAGAAAAAAAAGAGAAAAAAAGAAAG
1 AAAGAAAAAAAAGAAAAAAAAGAGAAAAAAAAAAAG
* *
1745488 AAGAGAAGAAAGAAGAAAGAAAA
1 AA-AGAA-AAAAAAGAAAAAAAA
1745511 CCGATCAACA
Statistics
Matches: 51, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
36 5 0.10
37 10 0.20
38 26 0.51
39 10 0.20
ACGTcount: A:0.79, C:0.01, G:0.17, T:0.03
Consensus pattern (36 bp):
AAAGAAAAAAAAGAAAAAAAAGAGAAAAAAAAAAAG
Found at i:1747175 original size:75 final size:73
Alignment explanation
Indices: 1746919--1747452 Score: 610
Period size: 73 Copynumber: 7.3 Consensus size: 73
1746909 CAAAGATCAG
* * * * * * *
1746919 AAATTTATATCACTTGAGAGTGTTTTTTCTCAAAA-CAACTTTTGTCTCGCTGGAGATAGTTTTC
1 AAATTTATCTCACTCGAGA-TGGTTTTTCTTAAAACCAAC-TTCGTCTCGCTTGAGACAGTTTTC
*
1746983 CCTTTAAACA
64 CCTTGAAACA
* * * * * * * **
1746993 AAATTTATCTTACTTGAGATTGTTTTTCTCAAAA-CAAGTTTTGTCTCACGGGAGACAGTTTTCC
1 AAATTTATCTCACTCGAGATGGTTTTTCTTAAAACCAA-CTTCGTCTCGCTTGAGACAGTTTTCC
1747057 CTTGAAACA
65 CTTGAAACA
* * * ** * *
1747066 AAATTTATCTCACTTGAGATTGTTTTTCTCAAAACCAGTTTCGTCTCACTAGAGACAG-TTTCCC
1 AAATTTATCTCACTCGAGATGGTTTTTCTTAAAACCAACTTCGTCTCGCTTGAGACAGTTTTCCC
1747130 TTGAAACAA
66 TTGAAAC-A
* *
1747139 GAAATTCTATCTCACTCGAGATGGTTTTTCTTAAAACCAACTTCGTCTCACTAGAGACAG-TTTC
1 -AAATT-TATCTCACTCGAGATGGTTTTTCTTAAAACCAACTTCGTCTCGCTTGAGACAGTTTTC
1747203 CCTTGAAACAA
64 CCTTGAAAC-A
*
1747214 GAAATTTTATTTCACTCGAGATGGTTTTTCTTAAAACCAACTTCGTCTCGCTTGAGACAGTTTTC
1 -AAA-TTTATCTCACTCGAGATGGTTTTTCTTAAAACCAACTTCGTCTCGCTTGAGACAGTTTTC
1747279 CCTTGAAACA
64 CCTTGAAACA
* * * *
1747289 AAATATATCTCACTTGAGATGGTTTTTCTTAAAACCAACTTCATCTCGCTTGAGATAGTTTTCCC
1 AAATTTATCTCACTCGAGATGGTTTTTCTTAAAACCAACTTCGTCTCGCTTGAGACAGTTTTCCC
1747354 TTGAAACA
66 TTGAAACA
* * * * * *
1747362 TAATTTATCTAACTCGAGATTGTTTTTCAT-AAACCAACTTCGTCTCGCTTGAGAAAGTGTTCCC
1 AAATTTATCTCACTCGAGATGGTTTTTCTTAAAACCAACTTCGTCTCGCTTGAGACAGTTTTCCC
*
1747426 TCGAAACA
66 TTGAAACA
1747434 AAATTTATCTCACTCGAGA
1 AAATTTATCTCACTCGAGA
1747453 GAGCTTCTCT
Statistics
Matches: 414, Mismatches: 39, Indels: 16
0.88 0.08 0.03
Matches are distributed among these distances:
72 68 0.16
73 186 0.45
74 27 0.07
75 118 0.29
76 15 0.04
ACGTcount: A:0.29, C:0.21, G:0.13, T:0.36
Consensus pattern (73 bp):
AAATTTATCTCACTCGAGATGGTTTTTCTTAAAACCAACTTCGTCTCGCTTGAGACAGTTTTCCC
TTGAAACA
Found at i:1747381 original size:37 final size:36
Alignment explanation
Indices: 1746971--1747452 Score: 199
Period size: 36 Copynumber: 13.1 Consensus size: 36
1746961 TGTCTCGCTG
* *
1746971 GAGATAGTTTTCCCTTTAAACAAAATTTATCTTACTT
1 GAGATAGTTTTCCCTTGAAAC-AAATTTATCTCACTT
* * ** * * **
1747008 GAGATTGTTTT-TCTCAAAACAAGTTTTGTCTCACGG
1 GAGATAGTTTTCCCTTGAAACAA-ATTTATCTCACTT
*
1747044 GAGACAGTTTTCCCTTGAAACAAAATTTATCTCACTT
1 GAGATAGTTTTCCCTTGAAAC-AAATTTATCTCACTT
* * ** * * * *
1747081 GAGATTGTTTT-TCTCAAAACCAGTTTCGTCTCACTA
1 GAGATAGTTTTCCCTTGAAACAAATTT-ATCTCACTT
* *
1747117 GAGACAG-TTTCCCTTGAAACAAGAAATTCTATCTCACTC
1 GAGATAGTTTTCCCTTGAAAC---AAATT-TATCTCACTT
* * * * ** *
1747156 GAGATGGTTTT-TCTTAAAACCAACTTCGTCTCACTA
1 GAGATAGTTTTCCCTTGAAA-CAAATTTATCTCACTT
* * *
1747192 GAGACAG-TTTCCCTTGAAACAAGAAATTTTATTTCACTC
1 GAGATAGTTTTCCCTTGAAAC---AAA-TTTATCTCACTT
* * * * ** *
1747231 GAGATGGTTTT-TCTTAAAACCAACTTCGTCTCGCTT
1 GAGATAGTTTTCCCTTGAAA-CAAATTTATCTCACTT
* *
1747267 GAGACAGTTTTCCCTTGAAACAAAATATATCTCACTT
1 GAGATAGTTTTCCCTTGAAAC-AAATTTATCTCACTT
* * * * * *
1747304 GAGATGGTTTT-TCTTAAAACCAACTTCATCTCGCTT
1 GAGATAGTTTTCCCTTGAAA-CAAATTTATCTCACTT
* *
1747340 GAGATAGTTTTCCCTTGAAACATAATTTATCTAACTC
1 GAGATAGTTTTCCCTTGAAACA-AATTTATCTCACTT
* * * * ** *
1747377 GAGATTGTTTT-TCAT-AAACCAACTTCGTCTCGCTT
1 GAGATAGTTTTCCCTTGAAA-CAAATTTATCTCACTT
* * * *
1747412 GAGAAAGTGTTCCCTCGAAACAAAATTTATCTCACTC
1 GAGATAGTTTTCCCTTGAAAC-AAATTTATCTCACTT
1747449 GAGA
1 GAGA
1747453 GAGCTTCTCT
Statistics
Matches: 310, Mismatches: 108, Indels: 54
0.66 0.23 0.11
Matches are distributed among these distances:
35 32 0.10
36 117 0.38
37 108 0.35
38 4 0.01
39 40 0.13
40 9 0.03
ACGTcount: A:0.30, C:0.21, G:0.13, T:0.36
Consensus pattern (36 bp):
GAGATAGTTTTCCCTTGAAACAAATTTATCTCACTT
Found at i:1748142 original size:135 final size:136
Alignment explanation
Indices: 1747727--1748221 Score: 622
Period size: 136 Copynumber: 3.7 Consensus size: 136
1747717 GGGTAAACTA
* * *
1747727 ATCAACATTTCCAATAGAGAGTTCATAATGAGAATAGCTCATCCGACAGAGGGAGAAGAAGTTCA
1 ATCAACATTTCAAATAGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCA
* * *
1747792 TAATGAGAATAACTTGTTCGACCTATCACTCTATTCATGACATTTCGAATCAGTGACACCTCGCT
66 TAATGAGAAGAACTTGTTCGACCTATCACTCGATTCACGACATTTCGAATCAGTGACACCTCGCT
1747857 TGAGGG
131 TGAGGG
** * *
1747863 ATTGACATTTCAAA-ATGAGAGTCCATAATGAGAAGAACTCATCCAACAGAGGGAGAAGAAGTTC
1 ATCAACATTTCAAATA-GAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTC
* * * * **
1747927 ATAATGAGAATAGCTTGTTCGACCTATCACTCGATTCACGATATTTTGAATCAGTGATGCCTCGC
65 ATAATGAGAAGAACTTGTTCGACCTATCACTCGATTCACGACATTTCGAATCAGTGACACCTCGC
1747992 TTGAGGG
130 TTGAGGG
** * * * *
1747999 ATTGATATTTCAAATAAAGATTTCATAATGAGAAGAAATCATCCGACAGAGGGAGAA-AAGTTCA
1 ATCAACATTTCAAATAGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCA
* * ** *
1748063 TAATGAGAAGAGA-TTGTTCGACCTATCGCTCGATTCACGGCATTTCGAATCAGCAACACCTCAC
66 TAATGAGAAGA-ACTTGTTCGACCTATCACTCGATTCACGACATTTCGAATCAGTGACACCTCGC
*
1748127 TCGAGGG
130 TTGAGGG
* * * * *
1748134 ATCAATATTTTC-AGTAGAGAGTTCATAATGAGAAGAACTCATCTGATA-AAGGAGAAGAAGTTC
1 ATCAACA-TTTCAAATAGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTC
*
1748197 ATAATGAGAAGAACTTGTTCAACCT
65 ATAATGAGAAGAACTTGTTCGACCT
1748222 TAGCTTGTTT
Statistics
Matches: 311, Mismatches: 42, Indels: 13
0.85 0.11 0.04
Matches are distributed among these distances:
134 8 0.03
135 129 0.41
136 173 0.56
137 1 0.00
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.26
Consensus pattern (136 bp):
ATCAACATTTCAAATAGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCA
TAATGAGAAGAACTTGTTCGACCTATCACTCGATTCACGACATTTCGAATCAGTGACACCTCGCT
TGAGGG
Done.